Guide to the Human Genome
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Name: DACH1 Sequence: fasta or formatted (558aa) NCBI GI: 18375613
Description:

dachshund homolog 1 isoform b

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [504aa] dachshund homolog 1 isoform c
alt prot [706aa] dachshund homolog 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         54           9
 C cysteine            1.4          8           1
 D aspartate           3.0         17           1
 E glutamate           5.6         31           1
 F phenylalanine       1.8         10           1
 G glycine            10.9         61          10
 H histidine           1.3          7           1
 I isoleucine          3.9         22           2
 K lysine              5.4         30           2
 L leucine             8.4         47           2
 M methionine          1.8         10           1
 N asparagine          4.3         24           2
 P proline             7.7         43           2
 Q glutamine           3.8         21           1
 R arginine            4.5         25           2
 S serine             13.4         75          24
 T threonine           7.5         42           3
 V valine              4.5         25           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dachshund homolog 1 isoform b 
DACH1                 0.854   dachshund homolog 1 isoform c 
DACH1                 0.673   dachshund homolog 1 isoform a 
DACH2                 0.225   dachshund 2 isoform b 
DACH2                 0.216   dachshund 2 isoform a 
DACH2                 0.168   dachshund 2 isoform c 
ZIC2                  0.052   zinc finger protein of the cerebellum 2 
KRT10                 0.051   keratin 10 
KRT1                  0.050   keratin 1 
ARID1B                0.050   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.050   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.050   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOR                   0.049   loricrin 
CNOT3                 0.049   CCR4-NOT transcription complex, subunit 3 
SOX4                  0.049   SRY (sex determining region Y)-box 4 
TNRC18                0.046   trinucleotide repeat containing 18 
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 
HOXB3                 0.042   homeobox B3 
EVX2                  0.041   even-skipped homeobox 2 
DMKN                  0.041   dermokine isoform 4 precursor 
DMKN                  0.041   dermokine isoform 2 precursor 
KRT9                  0.039   keratin 9 
FAM98B                0.039   family with sequence similarity 98, member B isofor...
RFX1                  0.039   regulatory factor X1 
DMKN                  0.038   dermokine isoform 5 precursor 
DMKN                  0.038   dermokine isoform 3 precursor 
SRRM2                 0.038   splicing coactivator subunit SRm300 
KRT2                  0.038   keratin 2 
AMMECR1               0.037   AMMECR1 protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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