Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PARD3B Sequence: fasta or formatted (1143aa) NCBI GI: 119120897
Description:

par-3 partitioning defective 3 homolog B isoform b

Referenced in:

G Proteins
Gap Junctions and Tight Junctions
PDZ Domain

Other entries for this name:
alt prot [1136aa] par-3 partitioning defective 3 homolog B isoform c
alt prot [1104aa] par-3 partitioning defective 3 homolog B isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         67           2
 C cysteine            0.9         10           1
 D aspartate           5.9         67           3
 E glutamate           7.9         90           3
 F phenylalanine       2.6         30           2
 G glycine             9.1        104           2
 H histidine           2.7         31           2
 I isoleucine          3.2         37           1
 K lysine              7.5         86           3
 L leucine             8.5         97           3
 M methionine          1.9         22           1
 N asparagine          3.6         41           2
 P proline             9.3        106           4
 Q glutamine           4.2         48           2
 R arginine            7.1         81           2
 S serine              7.5         86           3
 T threonine           4.0         46           2
 V valine              5.5         63           2
 W tryptophan          0.3          3           1
 Y tyrosine            2.4         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   par-3 partitioning defective 3 homolog B isoform b ... 
PARD3B                0.860   par-3 partitioning defective 3 homolog B isoform c ...
PARD3B                0.703   par-3 partitioning defective 3 homolog B isoform a ...
PARD3                 0.120   partitioning-defective protein 3 homolog 
MPDZ                  0.024   multiple PDZ domain protein 
INADL                 0.020   InaD-like 
IL16                  0.019   interleukin 16 isoform 2 
DLG2                  0.018   chapsyn-110 isoform 3 
DLG2                  0.018   chapsyn-110 isoform 1 
DLG2                  0.018   chapsyn-110 isoform 2 
MAGI2                 0.017   membrane associated guanylate kinase, WW and PDZ dom...
SCRIB                 0.017   scribble isoform b 
SCRIB                 0.017   scribble isoform a 
DLG3                  0.017   synapse-associated protein 102 isoform a 
MAGI3                 0.016   membrane-associated guanylate kinase-related  3 iso...
DLG4                  0.016   post-synaptic density protein 95 isoform 1 
DLG4                  0.016   post-synaptic density protein 95 isoform 2 
LOC100133599          0.016   PREDICTED: hypothetical protein 
PDZRN3                0.016   PDZ domain containing ring finger 3 
PDZD2                 0.016   PDZ domain containing 2 
PTPN13                0.015   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.015   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.015   protein tyrosine phosphatase, non-receptor type 13 is...
DLG1                  0.015   discs, large homolog 1 isoform 1 
DLG1                  0.015   discs, large homolog 1 isoform 2 
SYNJ2BP               0.015   synaptojanin 2 binding protein 
LOC100133599          0.015   PREDICTED: hypothetical protein 
LNX2                  0.015   ligand of numb-protein X 2 
PTPN13                0.014   protein tyrosine phosphatase, non-receptor type 13 i...
FRMPD2                0.013   FERM and PDZ domain containing 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press