Guide to the Human Genome
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Name: FRMPD2 Sequence: fasta or formatted (1309aa) NCBI GI: 110346436
Description:

FERM and PDZ domain containing 2 isoform 3

Referenced in:

Cytoskeleton
PDZ Domain

Other entries for this name:
alt prot [1287aa] FERM and PDZ domain containing 2 isoform 1
alt prot [320aa] FERM and PDZ domain containing 2 isoform 4
alt prot [261aa] FERM and PDZ domain containing 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         87           2
 C cysteine            2.2         29           1
 D aspartate           3.7         49           1
 E glutamate           7.6         99           3
 F phenylalanine       3.7         48           3
 G glycine             7.3         96           2
 H histidine           2.9         38           1
 I isoleucine          4.0         52           2
 K lysine              4.4         58           2
 L leucine            11.0        144           3
 M methionine          1.8         23           1
 N asparagine          2.8         36           2
 P proline             5.8         76           3
 Q glutamine           5.7         75           2
 R arginine            5.8         76           2
 S serine             10.5        137           3
 T threonine           4.9         64           2
 V valine              6.3         83           2
 W tryptophan          1.1         14           1
 Y tyrosine            1.9         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM and PDZ domain containing 2 isoform 3 
FRMPD2                0.976   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                0.235   FERM and PDZ domain containing 2 isoform 4 
FRMPD2L1              0.234   FERM and PDZ domain containing 2 like 1 isoform 4 [...
FRMPD2L2              0.234   FERM and PDZ domain containing 2 like 2 isoform 4 [...
FRMPD2                0.195   FERM and PDZ domain containing 2 isoform 2 
FRMPD2L1              0.195   FERM and PDZ domain containing 2 like 1 isoform 2 [...
FRMPD2L2              0.195   FERM and PDZ domain containing 2 like 2 isoform 2 [...
PTPN13                0.179   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.132   protein tyrosine phosphatase, non-receptor type 13 is...
PTPN13                0.105   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.105   protein tyrosine phosphatase, non-receptor type 13 i...
FRMD6                 0.039   FERM domain containing 6 
FRMD6                 0.039   FERM domain containing 6 
PTPN21                0.037   protein tyrosine phosphatase, non-receptor type 21 ...
PTPN14                0.034   protein tyrosine phosphatase, non-receptor type 14 [...
SCRIB                 0.031   scribble isoform b 
SCRIB                 0.031   scribble isoform a 
EPB41L4A              0.031   erythrocyte protein band 4.1-like 4 
EZR                   0.029   ezrin 
EZR                   0.029   ezrin 
FRMD1                 0.029   FERM domain containing 1 isoform 1 
MPDZ                  0.028   multiple PDZ domain protein 
EPB41L3               0.028   erythrocyte membrane protein band 4.1-like 3 
MSN                   0.027   moesin 
RDX                   0.027   radixin 
NF2                   0.027   neurofibromin 2 isoform 2 
NF2                   0.027   neurofibromin 2 isoform 2 
NF2                   0.027   neurofibromin 2 isoform 2 
NF2                   0.027   neurofibromin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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