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Search of human proteins with 239753335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 242 4e-65
gi|239741762 PREDICTED: hypothetical protein [Homo sapiens] 102 9e-23
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 54 2e-08
gi|9966841 cell death regulator aven [Homo sapiens] 47 3e-06
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 46 6e-06
gi|109452587 family with sequence similarity 98, member B isofor... 46 6e-06
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 46 7e-06
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 46 7e-06
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 45 9e-06
gi|55956899 keratin 9 [Homo sapiens] 45 1e-05
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 44 2e-05
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 44 2e-05
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 44 2e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 44 3e-05
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 44 4e-05
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 44 4e-05
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 44 4e-05
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 44 4e-05
gi|4507741 twist [Homo sapiens] 44 4e-05
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 44 4e-05
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 44 4e-05
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 44 4e-05
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 44 4e-05
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 44 4e-05
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 44 4e-05
gi|28269693 xylosyltransferase I [Homo sapiens] 43 5e-05
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-05
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-05
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 242 bits (618), Expect = 4e-65
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MIRRILSWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAA 60
MIRRILSWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAA
Sbjct: 1 MIRRILSWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAA 60
Query: 61 WGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTGLAR 113
WGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTGLAR
Sbjct: 61 WGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTGLAR 113
>gi|239741762 PREDICTED: hypothetical protein [Homo sapiens]
Length = 53
Score = 102 bits (253), Expect = 9e-23
Identities = 48/52 (92%), Positives = 48/52 (92%)
Query: 62 GRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTGLAR 113
G GG PAAQSGGDGGGLPRRAGAEPG RGGGSGGTMPGGRRAAAWLTGLAR
Sbjct: 2 GPVGGRPAAQSGGDGGGLPRRAGAEPGDRGGGSGGTMPGGRRAAAWLTGLAR 53
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 54.3 bits (129), Expect = 2e-08
Identities = 40/92 (43%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPG--PAAPSPPARGAAAWGRSGG 66
GD + P GG + PGPG G + R R R G P P PP RGA GRSGG
Sbjct: 676 GDPFWDGPGDPMRGGPMRGG-PGPGPGPYHRG-RGGRGGNEPPPPPPPFRGARG-GRSGG 732
Query: 67 GPAAQSGGDGGGLPRRAGAEP-GGRGGGSGGT 97
GP GG GGG+ G P G GGG G +
Sbjct: 733 GPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNS 764
Score = 45.4 bits (106), Expect = 9e-06
Identities = 38/108 (35%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRR------PPRRQRPGPAAPSPPARGAAAWG 62
G G + P GG GPG R PPR P P P RG G
Sbjct: 635 GGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRG 694
Query: 63 RSGGGPAAQSGGDGGGLPRRAGAEP--------GGRGGGSGGTMPGGR 102
G GP G GG R G EP G RGG SGG P GR
Sbjct: 695 GPGPGPGPYHRGRGG----RGGNEPPPPPPPFRGARGGRSGGGPPNGR 738
Score = 45.1 bits (105), Expect = 1e-05
Identities = 34/94 (36%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 9 GDQAGERARAPSGGGSGQAQRP--GPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG 66
G+ +G R GGG G RP GPG R GP G G SG
Sbjct: 762 GNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGP--------GGGISGGSGH 813
Query: 67 GP-AAQSGGDGGGLPRRAGAEPGGRGGGSGGTMP 99
P GG G G R PGG GGSGG P
Sbjct: 814 RPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRP 847
Score = 39.3 bits (90), Expect = 7e-04
Identities = 30/94 (31%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
G + E GGG G GPG G R GP GA R GP
Sbjct: 780 GHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGG----GMGAGGGHRPHEGP 835
Query: 69 AAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGR 102
GG GG P G GG G +PG R
Sbjct: 836 GGSMGGSGGHRPHE-GPGHGGPHGHRPHDVPGHR 868
Score = 35.8 bits (81), Expect = 0.008
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 22 GGSGQAQRPGPGRGSWRRPPRRQRPGPA----APSPPARGAAAWGRSGGGPAAQSGGDGG 77
GG G GPG G R GP + P G GGG G GG
Sbjct: 747 GGGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGG-SMGGGGGHRPHEGPGG 805
Query: 78 GLPRRAGAEP-GGRGGGSGGTMPGGRR 103
G+ +G P G GGG G GG R
Sbjct: 806 GISGGSGHRPHEGPGGGMGA--GGGHR 830
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 21 GGGSGQAQRPGPGRG--SWRRPPRRQRPGPAAPSPPARGAAAWGRSGGG---PAAQSGGD 75
GGG + PG G G S RP G + P G GGG GG
Sbjct: 748 GGGHRPHEGPGGGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGI 807
Query: 76 GGGLPRRAGAEPGGRGGGSGGTMP 99
GG R PGG G GG P
Sbjct: 808 SGGSGHRPHEGPGGGMGAGGGHRP 831
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 14/80 (17%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRP-------GPAAPSPPA---RGA 58
G + E GG G GPG G P RP G PP RG
Sbjct: 828 GHRPHEGPGGSMGGSGGHRPHEGPGHGG----PHGHRPHDVPGHRGHDHRGPPPHEHRGH 883
Query: 59 AAWGRSGGGPAAQSGGDGGG 78
G GGG GG G
Sbjct: 884 DGPGHGGGGHRGHDGGHSHG 903
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 62 GRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G SGG P G G LP G G G G PGG
Sbjct: 540 GGSGGSP---DGAGGSKLPPVLANLMGSMGAGKGPQGPGG 576
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 47.0 bits (110), Expect = 3e-06
Identities = 36/89 (40%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 17 RAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDG 76
+A G G+ +RPG GR R +RPG AA A A G GGG GGDG
Sbjct: 2 QAERGARGGRGRRPGRGRPGGDR--HSERPGAAA-------AVARGGGGGG-----GGDG 47
Query: 77 GGLPRRAGAE--PGGRGGGSGGTMPGGRR 103
GG R G RGG GG P G R
Sbjct: 48 GGRRGRGRGRGFRGARGGRGGGGAPRGSR 76
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 9 GDQAGER-------ARAPSGGGSGQAQ-RPGPGRGSWRRPPRRQRPGPAAPSPPARGAAA 60
GD+ ER AR GGG G R G GRG R R R G AP R
Sbjct: 22 GDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGG 81
Query: 61 WGRSGGGP 68
WG P
Sbjct: 82 WGAGASAP 89
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 46.2 bits (108), Expect = 6e-06
Identities = 33/88 (37%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 10 DQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPA 69
DQ+ + SGGG G + G G G RG G SGGG
Sbjct: 180 DQSSMSSGGGSGGGYGNQDQSGGG-------------GSGGYGQQDRGGRGRGGSGGG-- 224
Query: 70 AQSGGDGGGLPRRAGA-EPGGRGGGSGG 96
GG GGG R +G EP GRGGG GG
Sbjct: 225 --GGGGGGGYNRSSGGYEPRGRGGGRGG 250
Score = 41.2 bits (95), Expect = 2e-04
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 9 GDQAGERARAPSGGGSG-----QAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGR 63
G+ +++ SGGGSG Q Q G G G + + R R RG + G
Sbjct: 175 GNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGR---------GRGGSGGGG 225
Query: 64 SGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPG 100
GGG + GG PR G GGRGG G G
Sbjct: 226 GGGG-GGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGG 261
Score = 40.0 bits (92), Expect = 4e-04
Identities = 36/108 (33%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPP----------RRQRPGPAAPSPPARGA 58
G G R PSGGG G Q+ G W+ P R + AP P G
Sbjct: 401 GSGGGGRGGFPSGGGGGGGQQRA---GDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGG 457
Query: 59 AAWGRSGGGPAAQS--GGDGG---GLPRRAGAEPGGRGGGSGGTMPGG 101
G GG GG GG G R G + GG GG GG GG
Sbjct: 458 GPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGG 505
Score = 38.9 bits (89), Expect = 9e-04
Identities = 38/117 (32%), Positives = 42/117 (35%), Gaps = 46/117 (39%)
Query: 12 AGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAA- 70
A RA GGG+G R G GRG P RG G SGGG
Sbjct: 369 ATRRADFNRGGGNG---RGGRGRGG----------------PMGRGGYGGGGSGGGGRGG 409
Query: 71 -QSGGDGGGLPRRAG-------------------------AEPGGRGGGSGGTMPGG 101
SGG GGG +RAG +P G GGG GG+ GG
Sbjct: 410 FPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGG 466
Score = 36.6 bits (83), Expect = 0.004
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 11 QAGERARAPSGGGS----GQAQRPGPGRGSWRRPPRRQRPGPAAPS-------PPARGAA 59
Q+G ++ PS GG GQ Q P +G ++ G +
Sbjct: 126 QSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMS 185
Query: 60 AWGRSGGGPAAQS----GGDGG-GLPRRAGAEPGGRGGGSGGTMPGGRRAA 105
+ G SGGG Q GG GG G R G GG GGG GG G R++
Sbjct: 186 SGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSS 236
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 16/57 (28%)
Query: 57 GAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGG------RRAAAW 107
G GR GGP + GG GGG G GGG GG GG +RA W
Sbjct: 380 GNGRGGRGRGGPMGR-GGYGGG---------GSGGGGRGGFPSGGGGGGGQQRAGDW 426
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 46.2 bits (108), Expect = 6e-06
Identities = 29/73 (39%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 38 RRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRG---GGS 94
R P R RP P PP + GGG GG GGG R G GGRG GG
Sbjct: 304 RVPDRGGRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGG 363
Query: 95 GGTMPGGRRAAAW 107
GG GG W
Sbjct: 364 GGWGGGGGGGGGW 376
Score = 44.3 bits (103), Expect = 2e-05
Identities = 34/96 (35%), Positives = 35/96 (36%), Gaps = 26/96 (27%)
Query: 8 WGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGG 67
WG G R GGG G G GRG W G WG GGG
Sbjct: 338 WGGGGGGGGR---GGGGG-----GGGRGGW-----------------GGGGGGWGGGGGG 372
Query: 68 PAAQSGGDGGGLPRRAG-AEPGGRGGGSGGTMPGGR 102
GG GGG G + GGRGG G GGR
Sbjct: 373 GGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGR 408
Score = 40.4 bits (93), Expect = 3e-04
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 21 GGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLP 80
GG + + P P W++ ++ G G GR GGG GG GGG
Sbjct: 309 GGRPNEIEPPPPEMPPWQK----RQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGG-- 362
Query: 81 RRAGAEPGGRGGGSGGTMPGG 101
G GG GGG GG GG
Sbjct: 363 ---GGGWGGGGGGGGGWGGGG 380
Score = 37.7 bits (86), Expect = 0.002
Identities = 31/89 (34%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG-G 67
G G R GGG G G G G W R G +G +G GG G
Sbjct: 348 GGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGG-------FQGRGDYGGRGGYG 400
Query: 68 PAAQSGGDGGGLPRRAGAEPGGRGGGSGG 96
GG G G P G GG GGG GG
Sbjct: 401 GRGGYGGRGYGDPYGGGGGGGGGGGGGGG 429
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/76 (36%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 28 QRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSG-GGPAAQSGGDGGGLPRRAGAE 86
Q G GRG W G G GR G GG GG GGG G
Sbjct: 329 QEGGGGRGGWG--------GGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGG 380
Query: 87 PGGRGGGSGGTMPGGR 102
GGRGG G GGR
Sbjct: 381 GGGRGGFQGRGDYGGR 396
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 8 WGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGG 67
WG G GGG G G GRG ++ G G GGG
Sbjct: 359 WGGGGGGWGGG-GGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGG 417
Query: 68 PAAQSGGDGGGLPRR 82
GG GGG RR
Sbjct: 418 GGGGGGGGGGGGYRR 432
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 45.8 bits (107), Expect = 7e-06
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 14 ERARAPSGG-GSGQAQRPGPGR-GSWRRPPRRQRPGPAAPS-PPARGAAAWGRSGGGPAA 70
+R R GG G+G+A++PGP R G+ R P + P A P PP+ A +G G
Sbjct: 130 QRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP 189
Query: 71 QSGGDGG---GLPRRAGAEP-GGRGGGSGGTMPGGR 102
GG G RR + P G GGG PGGR
Sbjct: 190 VPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGR 225
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 37 WRRPPRRQRPGPAAPSPPA----RGAAAWGRSGGGPAAQSGGDGGGLPRRAGA---EPGG 89
WR RP A + P AAA R+G PA D P A PGG
Sbjct: 25 WRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGG 84
Query: 90 RGGGSGGT-MPGGRRA 104
GGG G GRRA
Sbjct: 85 GGGGCGAQHWAAGRRA 100
Score = 32.3 bits (72), Expect = 0.083
Identities = 35/91 (38%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 16 ARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGD 75
A AP GGG G G W R QR A GAA G AA SG
Sbjct: 79 AIAPGGGGGGC------GAQHWAAGRRAQREQGA-------GAAVLADFGHVRAAPSGLR 125
Query: 76 GGGLPRRAGAEPGGRGGGSGGTMPGGRRAAA 106
L RR G GGRG G PG RA A
Sbjct: 126 RRRLQRRRGGR-GGRGAGR-ARKPGPDRAGA 154
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 45.8 bits (107), Expect = 7e-06
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 14 ERARAPSGG-GSGQAQRPGPGR-GSWRRPPRRQRPGPAAPS-PPARGAAAWGRSGGGPAA 70
+R R GG G+G+A++PGP R G+ R P + P A P PP+ A +G G
Sbjct: 133 QRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP 192
Query: 71 QSGGDGG---GLPRRAGAEP-GGRGGGSGGTMPGGR 102
GG G RR + P G GGG PGGR
Sbjct: 193 VPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGR 228
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 37 WRRPPRRQRPGPAAPSPPA----RGAAAWGRSGGGPAAQSGGDGGGLPRRAGAE---PGG 89
WR RP A + P AAA R+G PA D P A PGG
Sbjct: 25 WRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGG 84
Query: 90 RGGGSGGT----MPGGRRA 104
GGG GG GRRA
Sbjct: 85 SGGGGGGCGAQHWAAGRRA 103
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 45.8 bits (107), Expect = 7e-06
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 14 ERARAPSGG-GSGQAQRPGPGR-GSWRRPPRRQRPGPAAPS-PPARGAAAWGRSGGGPAA 70
+R R GG G+G+A++PGP R G+ R P + P A P PP+ A +G G
Sbjct: 133 QRRRGGRGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARP 192
Query: 71 QSGGDGG---GLPRRAGAEP-GGRGGGSGGTMPGGR 102
GG G RR + P G GGG PGGR
Sbjct: 193 VPGGPAGPRESWARRTSSPPRGAAGGGRPFLHPGGR 228
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 37 WRRPPRRQRPGPAAPSPPA----RGAAAWGRSGGGPAAQSGGDGGGLPRRAGAE---PGG 89
WR RP A + P AAA R+G PA D P A PGG
Sbjct: 25 WRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGG 84
Query: 90 RGGGSGGT----MPGGRRA 104
GGG GG GRRA
Sbjct: 85 SGGGGGGCGAQHWAAGRRA 103
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 45.4 bits (106), Expect = 9e-06
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 8 WGDQAGER-ARAPSGGG----------SGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPAR 56
WG +A A++P GGG +G+ R RG + PRR++P A P +
Sbjct: 164 WGQKAATAGAKSPGGGGKKPGQEKPAATGEKTRAAKSRGGGGKKPRREKPAAAGAKNPQK 223
Query: 57 GAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRAA 105
AAA G ++GG + E G + G GG P AA
Sbjct: 224 AAAA-----GAKFREAGGRKPRWRGQKATEAGAKSRGGGGIKPQKPAAA 267
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 45.1 bits (105), Expect = 1e-05
Identities = 37/97 (38%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 9 GDQAGERARAPSGGG-SGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGG 67
G G +R SGG G G G GS R G + S G G SGGG
Sbjct: 482 GGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGG 541
Query: 68 PAAQSGGDGGGLPRRAGAEPG---GRGGGSGGTMPGG 101
SGG GGG +G G G GGGSGG GG
Sbjct: 542 ---HSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGG 575
Score = 44.7 bits (104), Expect = 2e-05
Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 7 SWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG 66
S + G R SGG G+ R G G GS+ G + S G + G SG
Sbjct: 468 SGAGKIGLGGRGGSGGSYGRGSRGGSG-GSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGS 526
Query: 67 GPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G + G GG +G GG GGSGG GG
Sbjct: 527 GGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGG 561
Score = 41.6 bits (96), Expect = 1e-04
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
G G + S GGSG + G G G G G G SGGG
Sbjct: 501 GSGGGYGGGSGSRGGSGGSYGGGSGSGG----------GSGGGYGGGSGGGHSGGSGGGH 550
Query: 69 AAQSGGDGGGLPRRAGAEPGGRGGGSG 95
+ SGG+ GG G GG GGGSG
Sbjct: 551 SGGSGGNYGGGSGSGGGSGGGYGGGSG 577
Score = 38.5 bits (88), Expect = 0.001
Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 18/106 (16%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
G + G G GSG G G GS G + S + G GGG
Sbjct: 511 GSRGGSGGSYGGGSGSGGGSGGGYGGGSGG--------GHSGGSGGGHSGGSGGNYGGG- 561
Query: 69 AAQSGGDGGGLPRRAGAEPG---------GRGGGSGGTMPGGRRAA 105
+ GG GGG +G+ G G GG SGG+ GG A+
Sbjct: 562 SGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEAS 607
Score = 37.4 bits (85), Expect = 0.003
Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 30/107 (28%)
Query: 7 SWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG 66
S G G R + SG G G ++ G G G + G + G SGG
Sbjct: 38 SGGGGGGGRFSSSSGYGGGSSRVCGRGGGG------------------SFGYSYGGGSGG 79
Query: 67 GPAAQS--GGDGGGLPRRAGAEPGGR----------GGGSGGTMPGG 101
G +A S GG GGG GA GG GGGSGG GG
Sbjct: 80 GFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGG 126
Score = 36.2 bits (82), Expect = 0.006
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 16/91 (17%)
Query: 20 SGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGL 79
SGGG G G GS G + S +R +++ G GGG + S G GGG
Sbjct: 14 SGGGGGG------GLGS----------GGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGS 57
Query: 80 PRRAGAEPGGRGGGSGGTMPGGRRAAAWLTG 110
R G GG G S G GG +A+ L G
Sbjct: 58 SRVCGRGGGGSFGYSYGGGSGGGFSASSLGG 88
Score = 33.1 bits (74), Expect = 0.049
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 17/76 (22%)
Query: 21 GGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG-GPAAQSGGDGGGL 79
GGGSG G G G +RG + GG G +SGG GG
Sbjct: 559 GGGSGSGGGSGGGYGG---------------GSGSRGGSGGSHGGGSGFGGESGGSYGGG 603
Query: 80 PRRAGAEPGGRGGGSG 95
+G+ GG GGGSG
Sbjct: 604 EEASGSG-GGYGGGSG 618
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
G +G + GGGSG G G G G + G S GG
Sbjct: 523 GSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGS 582
Query: 69 AAQSGGDGGGLPRRAGAEPGG--RGGGSGGTMPGG 101
GG G G +G GG GSGG GG
Sbjct: 583 GGSHGG-GSGFGGESGGSYGGGEEASGSGGGYGGG 616
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 21 GGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARG-----AAAWGRSGGGPAAQSGGD 75
GGG G G R S+ R G + G + GR GGG S G
Sbjct: 16 GGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGG 75
Query: 76 GGGLPRRAGAEPGGRGGG---SGGTMPGGRRAAAWLTG 110
G G A + GG GGG GG GG ++ G
Sbjct: 76 GSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGG 113
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 21 GGGSG---QAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGG 77
GGGSG A G G G R G S G G SGGG G G
Sbjct: 74 GGGSGGGFSASSLGGGFGGGSRG-FGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFG 132
Query: 78 GLPRRAGAEPGGRGGGSGGTMPGGRRA 104
G G GG GGG GG + ++
Sbjct: 133 GF----GGFGGGAGGGDGGILTANEKS 155
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 44.7 bits (104), Expect = 2e-05
Identities = 35/95 (36%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 15 RARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGR-----SGGGPA 69
R+R S GG A RG + PRRQ+ PAA +RG + + PA
Sbjct: 132 RSRPQSRGGQKAAASGAKRRGVGGKEPRRQK--PAAAGAKSRGGKSHKKPRRRGQKAAPA 189
Query: 70 AQSGGDGGGLPRRAGAEPGGRGGGSGGTMP-GGRR 103
SGG GG P++A A GG GG P GRR
Sbjct: 190 KNSGG-GGNKPQKAAAAGAKNRGGGGGKKPRRGRR 223
Score = 30.4 bits (67), Expect = 0.32
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 15 RARAPSGGGSGQAQ--RPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRS-GGGPAAQ 71
+A A G G+ + + P R SW R ++ P A +R + +S GG AA
Sbjct: 86 QAAAAKAGSPGRRRVGKGPPSRESWTRSAPQRCPSQDAGRAGSRVCRSRPQSRGGQKAAA 145
Query: 72 SG----GDGGGLPRR---AGAEPGGRGGGS 94
SG G GG PRR A A RGG S
Sbjct: 146 SGAKRRGVGGKEPRRQKPAAAGAKSRGGKS 175
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 44.3 bits (103), Expect = 2e-05
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 40 PPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMP 99
P +R P P P RG GR GG GG GGG R G GGRGGG GG
Sbjct: 153 PLQRFLPRPPGEKGPPRGGGRGGRGGG---RGGGGRGGG---RGGGFRGGRGGGGGG-FR 205
Query: 100 GGR 102
GGR
Sbjct: 206 GGR 208
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 63 RSGGGPAAQSGGDGGGLPRRAGAE--PGGRGGGSGGTMPGGRR 103
R GG GG GGG R + GG GGG GG GG R
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGR 46
Score = 32.3 bits (72), Expect = 0.083
Identities = 28/80 (35%), Positives = 30/80 (37%), Gaps = 23/80 (28%)
Query: 21 GGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLP 80
GGG G R G G G RG ++ GGG GG GGG
Sbjct: 5 GGGRGGFNRGGGGGGF------------------NRGGSSNHFRGGG-----GGGGGGNF 41
Query: 81 RRAGAEPGGRGGGSGGTMPG 100
R G GRGGG GG G
Sbjct: 42 RGGGRGGFGRGGGRGGFNKG 61
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 78 GLPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTG 110
G PR G GGRGGG GG GG R + G
Sbjct: 166 GPPRGGGR--GGRGGGRGGGGRGGGRGGGFRGG 196
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 20/66 (30%)
Query: 19 PSGGGSGQ--AQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDG 76
P GGG G R G GRG RG G GGG GG G
Sbjct: 168 PRGGGRGGRGGGRGGGGRGG------------------GRGGGFRGGRGGGGGGFRGGRG 209
Query: 77 GGLPRR 82
GG R
Sbjct: 210 GGFRGR 215
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 44.3 bits (103), Expect = 2e-05
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 40 PPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMP 99
P +R P P P RG GR GG GG GGG R G GGRGGG GG
Sbjct: 153 PLQRFLPRPPGEKGPPRGGGRGGRGGG---RGGGGRGGG---RGGGFRGGRGGGGGG-FR 205
Query: 100 GGR 102
GGR
Sbjct: 206 GGR 208
Score = 35.0 bits (79), Expect = 0.013
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 63 RSGGGPAAQSGGDGGGLPRRAGAE--PGGRGGGSGGTMPGGRR 103
R GG GG GGG R + GG GGG GG GG R
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGR 46
Score = 32.3 bits (72), Expect = 0.083
Identities = 28/80 (35%), Positives = 30/80 (37%), Gaps = 23/80 (28%)
Query: 21 GGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLP 80
GGG G R G G G RG ++ GGG GG GGG
Sbjct: 5 GGGRGGFNRGGGGGGF------------------NRGGSSNHFRGGG-----GGGGGGNF 41
Query: 81 RRAGAEPGGRGGGSGGTMPG 100
R G GRGGG GG G
Sbjct: 42 RGGGRGGFGRGGGRGGFNKG 61
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 78 GLPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTG 110
G PR G GGRGGG GG GG R + G
Sbjct: 166 GPPRGGGR--GGRGGGRGGGGRGGGRGGGFRGG 196
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/66 (33%), Positives = 22/66 (33%), Gaps = 20/66 (30%)
Query: 19 PSGGGSGQ--AQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDG 76
P GGG G R G GRG RG G GGG GG G
Sbjct: 168 PRGGGRGGRGGGRGGGGRGG------------------GRGGGFRGGRGGGGGGFRGGRG 209
Query: 77 GGLPRR 82
GG R
Sbjct: 210 GGFRGR 215
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 44.3 bits (103), Expect = 2e-05
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 38 RRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG--------LPRRAGAEPGG 89
R P R RP P PP W + GP Q+GG GGG R G E GG
Sbjct: 301 RVPDRGGRPNEIEPPPPEM--PPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQGG 358
Query: 90 RGGGSGGTMPGGR 102
GG GG GGR
Sbjct: 359 GRGGRGGYDHGGR 371
Score = 32.3 bits (72), Expect = 0.083
Identities = 32/91 (35%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 13 GERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQS 72
G R GGG G GRG + R G +G G SGGG Q
Sbjct: 349 GGRGGHEQGGGRG-------GRGGYDHGGRGGGRGNKH-----QGGWTDGGSGGGGGYQD 396
Query: 73 GGDGGGLPRRAGAEPGGRGGG--SGGTMPGG 101
GG R +G +PGG GG SGG GG
Sbjct: 397 GG-----YRDSGFQPGGYHGGHSSGGYQGGG 422
Score = 26.2 bits (56), Expect = 6.0
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGS------WRRPPRRQRPGPAAPSPPARGAAAWG 62
G G + GGG G Q GS +++ R Q G RG G
Sbjct: 408 GYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGHHGDRGGGRGGRG-G 466
Query: 63 RSG-GGPAAQSGGDGG 77
R G GG A Q GG GG
Sbjct: 467 RGGRGGRAGQGGGWGG 482
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 57 GAAAWGRSGGGPAA--------QSGGDGGGLPR----RAGAEPGGRGGGSGGTMPGGR 102
G ++ G GGG SG GGG + + G G RGGG GG GGR
Sbjct: 412 GHSSGGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGHHGDRGGGRGGR--GGR 467
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 43.9 bits (102), Expect = 3e-05
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRG---SW------RRPPRRQRPGPAAPSPPARGAA 59
G +AG + GGG G R GPGRG SW RPP + PG P PP +A
Sbjct: 1402 GGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPPPSSSA 1461
Query: 60 AW 61
+
Sbjct: 1462 VF 1463
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 22 GGSGQAQRPGPGRGSWR---RPPRRQRPGPAAPSPPA----RGAAA-WGRSGGGPAAQSG 73
G S ++ P P + +W RPP + PGP AP PP RG A WG G P
Sbjct: 378 GNSPNSEPPTP-KTAWAETSRPPETE-PGPPAPKPPLPPPHRGPAGNWGPPGDYP----- 430
Query: 74 GDGGGLP 80
D GG P
Sbjct: 431 -DRGGPP 436
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 19 PSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG 78
P GGG G PG + R QR + + R P GG
Sbjct: 1354 PGGGGGGAV----PGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGP------GG 1403
Query: 79 LPRRAGAEPGGRGGGSGG-TMPGGRRAAAW 107
+G+ GG GGG GG T PG +W
Sbjct: 1404 KAGSSGSSSGGGGGGPGGRTGPGRGDKRSW 1433
Score = 27.3 bits (59), Expect = 2.7
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 19 PSGGGSGQAQRPGPGRGSWRRPPRR---QRPGPAAPSPPARGAAAWGRSGGGPAAQSGGD 75
P + Q P P + PP+ Q GP A PARG + G+ P +S +
Sbjct: 868 PGSDEVAKIQTPPPKK----EPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTE 923
Query: 76 GGGLPRRAGAEPGGRGGGSGGTMPGG--RRA 104
R G PG G PG RRA
Sbjct: 924 -----TRWGPRPGSSRRGIPPEEPGAPPRRA 949
Score = 27.3 bits (59), Expect = 2.7
Identities = 33/107 (30%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
G G + P+G S P P RR +R GP S RG + G G
Sbjct: 989 GKLGGPKETPPNGNLS-----PAP---RLRRDYSYERVGPT--SCRGRGRGEYFARGRGF 1038
Query: 69 AAQSGGDGGGLPRRAGAE------PGGRGGGSGG----TMPGGRRAA 105
GG G G R GRGGG+GG P GR A+
Sbjct: 1039 RGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTAS 1085
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 20 SGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAP-------SPPARGAAAWGRSGGGPAAQS 72
SGGGS + G S P + GP P +PP G G GP Q
Sbjct: 571 SGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKG-DGIGPTRQP 629
Query: 73 GGDGGGLPR 81
G G P+
Sbjct: 630 PSQGLGYPK 638
Score = 25.8 bits (55), Expect = 7.8
Identities = 31/124 (25%), Positives = 38/124 (30%), Gaps = 26/124 (20%)
Query: 8 WGDQAGERARA--PSGGGS-----GQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARG--A 58
WG + G R P G+ G ++P P PP+ G P PP
Sbjct: 926 WGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETPKPPKPDPLK 985
Query: 59 AAWGRSGGGPAAQSGGDGGGLPR-----------------RAGAEPGGRGGGSGGTMPGG 101
G+ GG G+ PR R E RG G GT G
Sbjct: 986 ITKGKLGGPKETPPNGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGR 1045
Query: 102 RRAA 105
R A
Sbjct: 1046 GRGA 1049
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 43.5 bits (101), Expect = 4e-05
Identities = 40/117 (34%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 9 GDQAGERA-----------RAPSGGG-----SGQAQRPGPGRG----SWRRPPRR-QRPG 47
G + G+R PSGGG +G Q P PG G +WR + + P
Sbjct: 432 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPK 491
Query: 48 PAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPR--RAGAEPGGRGGGSGGTMPGGR 102
P PP R GGP GG GG + R G GGRGG GG GGR
Sbjct: 492 PEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGR 547
Score = 39.3 bits (90), Expect = 7e-04
Identities = 39/113 (34%), Positives = 44/113 (38%), Gaps = 31/113 (27%)
Query: 19 PSGGGS-----GQAQRPGPGRGS----WRRPPRR-QRPGPAAPSPP------------AR 56
PSGGG+ G Q P PG G+ WR + + P P PP
Sbjct: 453 PSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGP 512
Query: 57 GAAAWGRSG----GGPAAQ----SGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G GR G GGP GGD GG G + GG GGG G PGG
Sbjct: 513 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-PGG 564
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/85 (36%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 19 PSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG 78
P GG G R GPG R R GP RG G GG GG GGG
Sbjct: 502 PPGGDRG---RGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGR-GMDRGGFGGG 557
Query: 79 LPRRAGAEPG-------GRGGGSGG 96
G PG GR GG GG
Sbjct: 558 RRGGPGGPPGPLMEQMGGRRGGRGG 582
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
GD+ GG G R GPG G +R R G RG GR GG
Sbjct: 505 GDRGRGGPGGMRGGRGGLMDRGGPG-GMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-- 561
Query: 69 AAQSGGDGGGLPRRAGAEPGGRGG 92
GG G L + G GGRGG
Sbjct: 562 ---PGGPPGPLMEQMGGRRGGRGG 582
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 19/66 (28%)
Query: 40 PPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMP 99
PPR R P PP RG GGP GG GG + R GGRGG GG P
Sbjct: 403 PPREGRGMP----PPLRGGP------GGP----GGPGGPMGRM-----GGRGGDRGGFPP 443
Query: 100 GGRRAA 105
G R +
Sbjct: 444 RGPRGS 449
Score = 33.5 bits (75), Expect = 0.037
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 7 SWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG 66
S+ Q G ++APS Q G+ S R G RS
Sbjct: 183 SYPPQTGSYSQAPS---QYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMS 239
Query: 67 GPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRR 103
GP + G GG R G GGRGGG GG G R
Sbjct: 240 GPDNRGRGRGGF--DRGGMSRGGRGGGRGGMGSAGER 274
Score = 26.6 bits (57), Expect = 4.6
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 7 SWGDQAGERARAPSGGG-----SGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAW 61
S+G Q+ R PS G SG PG R S P R G G +
Sbjct: 204 SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENR-SMSGPDNR---GRGRGGFDRGGMSRG 259
Query: 62 GRSGGGPAAQSGGDGGGLPRRAG 84
GR GG S G+ GG + G
Sbjct: 260 GRGGGRGGMGSAGERGGFNKPGG 282
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 43.5 bits (101), Expect = 4e-05
Identities = 40/117 (34%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 9 GDQAGERA-----------RAPSGGG-----SGQAQRPGPGRG----SWRRPPRR-QRPG 47
G + G+R PSGGG +G Q P PG G +WR + + P
Sbjct: 487 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPK 546
Query: 48 PAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPR--RAGAEPGGRGGGSGGTMPGGR 102
P PP R GGP GG GG + R G GGRGG GG GGR
Sbjct: 547 PEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGR 602
Score = 39.3 bits (90), Expect = 7e-04
Identities = 39/113 (34%), Positives = 44/113 (38%), Gaps = 31/113 (27%)
Query: 19 PSGGGS-----GQAQRPGPGRGS----WRRPPRR-QRPGPAAPSPP------------AR 56
PSGGG+ G Q P PG G+ WR + + P P PP
Sbjct: 508 PSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGP 567
Query: 57 GAAAWGRSG----GGPAAQ----SGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G GR G GGP GGD GG G + GG GGG G PGG
Sbjct: 568 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-PGG 619
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/85 (36%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 19 PSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG 78
P GG G R GPG R R GP RG G GG GG GGG
Sbjct: 557 PPGGDRG---RGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGR-GMDRGGFGGG 612
Query: 79 LPRRAGAEPG-------GRGGGSGG 96
G PG GR GG GG
Sbjct: 613 RRGGPGGPPGPLMEQMGGRRGGRGG 637
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
GD+ GG G R GPG G +R R G RG GR GG
Sbjct: 560 GDRGRGGPGGMRGGRGGLMDRGGPG-GMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-- 616
Query: 69 AAQSGGDGGGLPRRAGAEPGGRGG 92
GG G L + G GGRGG
Sbjct: 617 ---PGGPPGPLMEQMGGRRGGRGG 637
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 19/66 (28%)
Query: 40 PPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMP 99
PPR R P PP RG GGP GG GG + R GGRGG GG P
Sbjct: 458 PPREGRGMP----PPLRGGP------GGP----GGPGGPMGRM-----GGRGGDRGGFPP 498
Query: 100 GGRRAA 105
G R +
Sbjct: 499 RGPRGS 504
Score = 32.7 bits (73), Expect = 0.064
Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 7 SWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG 66
S+ Q G ++APS Q G+ S R G RS
Sbjct: 239 SYPPQTGSYSQAPS---QYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMS 295
Query: 67 GPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGR 102
GP + G GG R G GGRGGG GG G R
Sbjct: 296 GPDNRGRGRGGF--DRGGMSRGGRGGGRGGMGAGER 329
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 7 SWGDQAGERARAPSGGG-----SGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAW 61
S+G Q+ R PS G SG PG R S P R R RG +
Sbjct: 260 SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENR-SMSGPDNRGRGRGGFD----RGGMSR 314
Query: 62 GRSGGGPAAQSGGDGGGLPRRAG 84
G GGG G+ GG + G
Sbjct: 315 GGRGGGRGGMGAGERGGFNKPGG 337
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 43.5 bits (101), Expect = 4e-05
Identities = 40/117 (34%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 9 GDQAGERA-----------RAPSGGG-----SGQAQRPGPGRG----SWRRPPRR-QRPG 47
G + G+R PSGGG +G Q P PG G +WR + + P
Sbjct: 493 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPK 552
Query: 48 PAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPR--RAGAEPGGRGGGSGGTMPGGR 102
P PP R GGP GG GG + R G GGRGG GG GGR
Sbjct: 553 PEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGR 608
Score = 39.3 bits (90), Expect = 7e-04
Identities = 39/113 (34%), Positives = 44/113 (38%), Gaps = 31/113 (27%)
Query: 19 PSGGGS-----GQAQRPGPGRGS----WRRPPRR-QRPGPAAPSPP------------AR 56
PSGGG+ G Q P PG G+ WR + + P P PP
Sbjct: 514 PSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGP 573
Query: 57 GAAAWGRSG----GGPAAQ----SGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G GR G GGP GGD GG G + GG GGG G PGG
Sbjct: 574 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-PGG 625
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/85 (36%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 19 PSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG 78
P GG G R GPG R R GP RG G GG GG GGG
Sbjct: 563 PPGGDRG---RGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGR-GMDRGGFGGG 618
Query: 79 LPRRAGAEPG-------GRGGGSGG 96
G PG GR GG GG
Sbjct: 619 RRGGPGGPPGPLMEQMGGRRGGRGG 643
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
GD+ GG G R GPG G +R R G RG GR GG
Sbjct: 566 GDRGRGGPGGMRGGRGGLMDRGGPG-GMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-- 622
Query: 69 AAQSGGDGGGLPRRAGAEPGGRGG 92
GG G L + G GGRGG
Sbjct: 623 ---PGGPPGPLMEQMGGRRGGRGG 643
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 19/66 (28%)
Query: 40 PPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMP 99
PPR R P PP RG GGP GG GG + R GGRGG GG P
Sbjct: 464 PPREGRGMP----PPLRGGP------GGP----GGPGGPMGRM-----GGRGGDRGGFPP 504
Query: 100 GGRRAA 105
G R +
Sbjct: 505 RGPRGS 510
Score = 32.7 bits (73), Expect = 0.064
Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 7 SWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG 66
S+ Q G ++APS Q G+ S R G RS
Sbjct: 245 SYPPQTGSYSQAPS---QYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMS 301
Query: 67 GPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGR 102
GP + G GG R G GGRGGG GG G R
Sbjct: 302 GPDNRGRGRGGF--DRGGMSRGGRGGGRGGMGAGER 335
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 7 SWGDQAGERARAPSGGG-----SGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAW 61
S+G Q+ R PS G SG PG R S P R R RG +
Sbjct: 266 SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENR-SMSGPDNRGRGRGGFD----RGGMSR 320
Query: 62 GRSGGGPAAQSGGDGGGLPRRAG 84
G GGG G+ GG + G
Sbjct: 321 GGRGGGRGGMGAGERGGFNKPGG 343
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 43.5 bits (101), Expect = 4e-05
Identities = 40/117 (34%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 9 GDQAGERA-----------RAPSGGG-----SGQAQRPGPGRG----SWRRPPRR-QRPG 47
G + G+R PSGGG +G Q P PG G +WR + + P
Sbjct: 488 GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPK 547
Query: 48 PAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPR--RAGAEPGGRGGGSGGTMPGGR 102
P PP R GGP GG GG + R G GGRGG GG GGR
Sbjct: 548 PEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGR 603
Score = 39.3 bits (90), Expect = 7e-04
Identities = 39/113 (34%), Positives = 44/113 (38%), Gaps = 31/113 (27%)
Query: 19 PSGGGS-----GQAQRPGPGRGS----WRRPPRR-QRPGPAAPSPP------------AR 56
PSGGG+ G Q P PG G+ WR + + P P PP
Sbjct: 509 PSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGP 568
Query: 57 GAAAWGRSG----GGPAAQ----SGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G GR G GGP GGD GG G + GG GGG G PGG
Sbjct: 569 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-PGG 620
Score = 35.4 bits (80), Expect = 0.010
Identities = 31/85 (36%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 19 PSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG 78
P GG G R GPG R R GP RG G GG GG GGG
Sbjct: 558 PPGGDRG---RGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGR-GMDRGGFGGG 613
Query: 79 LPRRAGAEPG-------GRGGGSGG 96
G PG GR GG GG
Sbjct: 614 RRGGPGGPPGPLMEQMGGRRGGRGG 638
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
GD+ GG G R GPG G +R R G RG GR GG
Sbjct: 561 GDRGRGGPGGMRGGRGGLMDRGGPG-GMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGG-- 617
Query: 69 AAQSGGDGGGLPRRAGAEPGGRGG 92
GG G L + G GGRGG
Sbjct: 618 ---PGGPPGPLMEQMGGRRGGRGG 638
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 19/66 (28%)
Query: 40 PPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMP 99
PPR R P PP RG GGP GG GG + R GGRGG GG P
Sbjct: 459 PPREGRGMP----PPLRGGP------GGP----GGPGGPMGRM-----GGRGGDRGGFPP 499
Query: 100 GGRRAA 105
G R +
Sbjct: 500 RGPRGS 505
Score = 33.5 bits (75), Expect = 0.037
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 7 SWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGG 66
S+ Q G ++APS Q G+ S R G RS
Sbjct: 239 SYPPQTGSYSQAPS---QYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMS 295
Query: 67 GPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRR 103
GP + G GG R G GGRGGG GG G R
Sbjct: 296 GPDNRGRGRGGF--DRGGMSRGGRGGGRGGMGSAGER 330
Score = 26.6 bits (57), Expect = 4.6
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 7 SWGDQAGERARAPSGGG-----SGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAW 61
S+G Q+ R PS G SG PG R S P R G G +
Sbjct: 260 SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENR-SMSGPDNR---GRGRGGFDRGGMSRG 315
Query: 62 GRSGGGPAAQSGGDGGGLPRRAG 84
GR GG S G+ GG + G
Sbjct: 316 GRGGGRGGMGSAGERGGFNKPGG 338
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 43.5 bits (101), Expect = 4e-05
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 6 LSWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSG 65
LS ++ +R + PSG G+ RR RR G A P G AA G G
Sbjct: 17 LSNSEEEPDRQQPPSGKRGGRK----------RRSSRRSAGGGAGP-----GGAAGGGVG 61
Query: 66 GGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
GG S G + AG GG GG GG+ GG
Sbjct: 62 GGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGG 97
Score = 35.4 bits (80), Expect = 0.010
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 9 GDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
G + +R +GGG+G G G G P +P+ RG + G GGG
Sbjct: 35 GGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEP--------GSPAQGKRGKKSAGCGGGGG 86
Query: 69 AAQSGGD--GGGLPR 81
A GG GGG P+
Sbjct: 87 AGGGGGSSSGGGSPQ 101
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 43.5 bits (101), Expect = 4e-05
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 18 APSGGGSGQAQR-PGPGRGSWRRPPRRQRPGPAA-PSPPARGAAAWGRSGGGPAAQSGGD 75
A GG +G A+ P PG+ PP+ GP + P PPA GA + P SGGD
Sbjct: 514 AEPGGAAGSAEAAPPPGQ-----PPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGD 568
Query: 76 --GGGLPRRAGAEPGGRGGGSGGTMPGGRRAAA 106
G P G G + G+ P G R A
Sbjct: 569 CSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 49 AAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPG-GRGGGSGGTMP 99
AA A + + + GG GG GGG G G G G G+G P
Sbjct: 326 AASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.5 bits (101), Expect = 4e-05
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 18 APSGGGSGQAQR-PGPGRGSWRRPPRRQRPGPAA-PSPPARGAAAWGRSGGGPAAQSGGD 75
A GG +G A+ P PG+ PP+ GP + P PPA GA + P SGGD
Sbjct: 514 AEPGGAAGSAEAAPPPGQ-----PPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGD 568
Query: 76 --GGGLPRRAGAEPGGRGGGSGGTMPGGRRAAA 106
G P G G + G+ P G R A
Sbjct: 569 CSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 49 AAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPG-GRGGGSGGTMP 99
AA A + + + GG GG GGG G G G G G+G P
Sbjct: 326 AASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 43.5 bits (101), Expect = 4e-05
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 18 APSGGGSGQAQR-PGPGRGSWRRPPRRQRPGPAA-PSPPARGAAAWGRSGGGPAAQSGGD 75
A GG +G A+ P PG+ PP+ GP + P PPA GA + P SGGD
Sbjct: 514 AEPGGAAGSAEAAPPPGQ-----PPQVVANGPGSGPPPPAGGAGSRDALFESPPGGSGGD 568
Query: 76 --GGGLPRRAGAEPGGRGGGSGGTMPGGRRAAA 106
G P G G + G+ P G R A
Sbjct: 569 CSAGSTPPADSVAAAGAGAAAAGSGPAGSRVPA 601
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 49 AAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPG-GRGGGSGGTMP 99
AA A + + + GG GG GGG G G G G G+G P
Sbjct: 326 AASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGP 377
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 43.5 bits (101), Expect = 4e-05
Identities = 38/102 (37%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 12 AGERARAPSGGGSG-----QAQRPGP----GRGSWRRPPRRQRPGPAAPSPPARGAAAWG 62
+G R GGG G QA R G GRG R R + G PP+ G+ G
Sbjct: 47 SGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGG 106
Query: 63 RSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRA 104
GG G GGG PRR EP GS G P G RA
Sbjct: 107 DGGG--CGGGGSGGGGAPRR---EPVPFPSGSAGPGPRGPRA 143
Score = 41.2 bits (95), Expect = 2e-04
Identities = 36/104 (34%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 11 QAGERARAPSG---------GGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAW 61
+ GE A SG GG G A P P G R R G RG
Sbjct: 15 EEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVC 74
Query: 62 GRS-GGGPAAQSG---GDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
GR G G G G G G P G+ GG GGG GG GG
Sbjct: 75 GRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGG 118
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 47 GPAAPSPPARGAAAWGRSGGGPAA-QSGGDGGGLP-------RRAGAEPGGRGGG 93
G P +AA G GG +A + GG G L RR GA GGRG G
Sbjct: 8 GRCCPEQEEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRG 62
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 15 RARAPSGG------GSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
R R PSGG G G G G+ RR P G A P P A G+ P
Sbjct: 94 RGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCP 153
Query: 69 AAQSGGDGGGLPRRAGAEPG 88
A G + R++G G
Sbjct: 154 ALPPGWKKEEVIRKSGLSAG 173
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 43.5 bits (101), Expect = 4e-05
Identities = 38/102 (37%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 12 AGERARAPSGGGSG-----QAQRPGP----GRGSWRRPPRRQRPGPAAPSPPARGAAAWG 62
+G R GGG G QA R G GRG R R + G PP+ G+ G
Sbjct: 47 SGVRREGARGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGG 106
Query: 63 RSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRA 104
GG G GGG PRR EP GS G P G RA
Sbjct: 107 DGGG--CGGGGSGGGGAPRR---EPVPFPSGSAGPGPRGPRA 143
Score = 41.2 bits (95), Expect = 2e-04
Identities = 36/104 (34%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 11 QAGERARAPSG---------GGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAW 61
+ GE A SG GG G A P P G R R G RG
Sbjct: 15 EEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGGGVC 74
Query: 62 GRS-GGGPAAQSG---GDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
GR G G G G G G P G+ GG GGG GG GG
Sbjct: 75 GRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGG 118
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 47 GPAAPSPPARGAAAWGRSGGGPAA-QSGGDGGGLP-------RRAGAEPGGRGGG 93
G P +AA G GG +A + GG G L RR GA GGRG G
Sbjct: 8 GRCCPEQEEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRG 62
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 15 RARAPSGG------GSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGP 68
R R PSGG G G G G+ RR P G A P P A G+ P
Sbjct: 94 RGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCP 153
Query: 69 AAQSGGDGGGLPRRAGAEPG 88
A G + R++G G
Sbjct: 154 ALPPGWKKEEVIRKSGLSAG 173
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 43.5 bits (101), Expect = 4e-05
Identities = 29/77 (37%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 26 QAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAW-GRSGGGPAAQSGGDGGGLPRRAG 84
QA PG P G A G A G GGG GG GGG G
Sbjct: 109 QALEPGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGG 168
Query: 85 AEPGGRGGGSGGTMPGG 101
PGG GGG GG + GG
Sbjct: 169 GGPGGGGGGPGGGLLGG 185
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 57 GAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGG-TMPGGRRAAAWLTG 110
GA G + GG A G GGG P G GG GGG GG GG L G
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLG 184
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 12 AGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQ 71
AG + GG G PG G G PG G G GGG
Sbjct: 129 AGAGGAGAAAGGGGAHDGPGGGGG----------PGGGGGPGGGPGGGGGGGPGGGGGGP 178
Query: 72 SGGDGGG 78
GG GG
Sbjct: 179 GGGLLGG 185
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 43.1 bits (100), Expect = 5e-05
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 12 AGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQ 71
AGER R + G G+ P P P R +R PA P+ G G GGG Q
Sbjct: 42 AGER-RGGAAVGGGEQPPPAPA------PRRERRDLPAEPAAARGGGGGGGGGGGGRGPQ 94
Query: 72 SGGDGGGLPRRAGAEPGGRG 91
+ GGG G +P RG
Sbjct: 95 ARARGGGPGEPRGQQPASRG 114
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 23 GSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGGLPRR 82
G+G+ +R G G +PP P PA AAA G GGG G GGG
Sbjct: 41 GAGE-RRGGAAVGGGEQPPPAPAPRRERRDLPAEPAAARGGGGGG------GGGGG---G 90
Query: 83 AGAEPGGRGGGSG---GTMPGGRRA 104
G + RGGG G G P R A
Sbjct: 91 RGPQARARGGGPGEPRGQQPASRGA 115
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 10 DQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPG----PAAPSPPARGA 58
D E A A GGG G G G R P R R G P P +RGA
Sbjct: 69 DLPAEPAAARGGGGGGG------GGGGGRGPQARARGGGPGEPRGQQPASRGA 115
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 43.1 bits (100), Expect = 5e-05
Identities = 35/96 (36%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 11 QAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAA 70
+ G + R G G A R R W P+R R A P GAAA GG A
Sbjct: 127 RGGRKGRLREGRG---AVRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAE 183
Query: 71 QSGGDGGGLPRRAGAEPGGRG--GGSGGTMPGGRRA 104
+ G GLP A GG G GG GG P RA
Sbjct: 184 RLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRA 219
Score = 32.0 bits (71), Expect = 0.11
Identities = 38/121 (31%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 8 WGDQAGERA----------RAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPA-- 55
WG Q ER A GGG G G G G+ PPR ++P P P
Sbjct: 177 WGGQGAERLGVHQPGLPTHAALRGGGGGSE---GGGGGARPSPPRARQPPSGRPRPRRTR 233
Query: 56 --------RGAAAWGRSG--GGPAA----QSGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G AA R G P A S G G A A P RGG G G
Sbjct: 234 LLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARP-TRGGARGHRRADG 292
Query: 102 R 102
R
Sbjct: 293 R 293
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 43.1 bits (100), Expect = 5e-05
Identities = 35/96 (36%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 11 QAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAA 70
+ G + R G G A R R W P+R R A P GAAA GG A
Sbjct: 127 RGGRKGRLREGRG---ALRGSGKRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAE 183
Query: 71 QSGGDGGGLPRRAGAEPGGRG--GGSGGTMPGGRRA 104
+ G GLP A GG G GG GG P RA
Sbjct: 184 RLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRA 219
Score = 32.0 bits (71), Expect = 0.11
Identities = 38/121 (31%), Positives = 41/121 (33%), Gaps = 30/121 (24%)
Query: 8 WGDQAGERA----------RAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPA-- 55
WG Q ER A GGG G G G G+ PPR ++P P P
Sbjct: 177 WGGQGAERLGVHQPGLPTHAALRGGGGGSE---GGGGGARPSPPRARQPPSGRPRPRRTR 233
Query: 56 --------RGAAAWGRSG--GGPAA----QSGGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
G AA R G P A S G G A A P RGG G G
Sbjct: 234 LLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARP-TRGGARGHRRADG 292
Query: 102 R 102
R
Sbjct: 293 R 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,728,383
Number of Sequences: 37866
Number of extensions: 641727
Number of successful extensions: 15028
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 1331
Number of HSP's that attempted gapping in prelim test: 5339
Number of HSP's gapped (non-prelim): 7095
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.