Guide to the Human Genome
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Name: LOC284988 Sequence: fasta or formatted (53aa) NCBI GI: 239741762
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {113aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1          8           3
 C cysteine            0.0          0           0
 D aspartate           3.8          2           1
 E glutamate           1.9          1           1
 F phenylalanine       0.0          0           0
 G glycine            34.0         18           3
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             5.7          3           1
 M methionine          3.8          2           1
 N asparagine          0.0          0           0
 P proline             9.4          5           1
 Q glutamine           1.9          1           1
 R arginine           13.2          7           2
 S serine              3.8          2           1
 T threonine           3.8          2           1
 V valine              1.9          1           1
 W tryptophan          1.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC284988             0.856   PREDICTED: hypothetical protein 
POU4F1                0.144   POU domain, class 4, transcription factor 1 
ZNF282                0.133   zinc finger protein 282 
TAF15                 0.111   TBP-associated factor 15 isoform 2 
TAF15                 0.111   TBP-associated factor 15 isoform 1 
LOC100293176          0.111   PREDICTED: hypothetical protein 
LOC100289054          0.111   PREDICTED: hypothetical protein 
LOC100289054          0.111   PREDICTED: hypothetical protein XP_002343716 
FZD8                  0.100   frizzled 8 
CASC3                 0.089   metastatic lymph node 51 
YEATS2                0.089   YEATS domain containing 2 
KHSRP                 0.089   KH-type splicing regulatory protein 
DHX36                 0.089   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.089   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
KRT10                 0.089   keratin 10 
GAR1                  0.089   nucleolar protein family A, member 1 
GAR1                  0.089   nucleolar protein family A, member 1 
C2orf21               0.089   chromosome 2 open reading frame 21 isoform 1 
KRT9                  0.089   keratin 9 
SLC4A5                0.089   sodium bicarbonate transporter 4 isoform a 
SLC4A5                0.089   sodium bicarbonate transporter 4 isoform c 
MAF                   0.089   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.089   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
GSK3A                 0.089   glycogen synthase kinase 3 alpha 
NRXN1                 0.078   neurexin 1 isoform beta precursor 
FAM98A                0.078   hypothetical protein LOC25940 
SHOX2                 0.078   short stature homeobox 2 isoform a 
PCDH7                 0.078   protocadherin 7 isoform b precursor 
PCDH7                 0.078   protocadherin 7 isoform c precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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