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Search of human proteins with 239753314
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
(1183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 2422 0.0
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 66 2e-10
gi|188536004 zinc finger protein 469 [Homo sapiens] 60 1e-08
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 60 2e-08
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 57 8e-08
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 57 8e-08
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 57 8e-08
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 57 1e-07
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 56 2e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 55 4e-07
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 55 4e-07
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 55 4e-07
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 54 9e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 54 1e-06
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 54 1e-06
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 53 2e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 52 4e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 51 6e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 50 1e-05
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 50 1e-05
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 50 1e-05
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 50 1e-05
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 50 1e-05
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 50 1e-05
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 50 1e-05
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 50 1e-05
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 50 1e-05
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 50 1e-05
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 50 1e-05
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 50 1e-05
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 2422 bits (6277), Expect = 0.0
Identities = 1183/1183 (100%), Positives = 1183/1183 (100%)
Query: 1 MLSVVHFLRSFFKTPEPGAHLPGEGEIEDNQLPTSPAEQVEQGWNQQTDRDDSETLSQQS 60
MLSVVHFLRSFFKTPEPGAHLPGEGEIEDNQLPTSPAEQVEQGWNQQTDRDDSETLSQQS
Sbjct: 1 MLSVVHFLRSFFKTPEPGAHLPGEGEIEDNQLPTSPAEQVEQGWNQQTDRDDSETLSQQS 60
Query: 61 ESGSDTKTDPFESASDTESLSGYLPRGVFHPLRGTPVDIEAPWEYPDVSATGPPQEQHLT 120
ESGSDTKTDPFESASDTESLSGYLPRGVFHPLRGTPVDIEAPWEYPDVSATGPPQEQHLT
Sbjct: 61 ESGSDTKTDPFESASDTESLSGYLPRGVFHPLRGTPVDIEAPWEYPDVSATGPPQEQHLT 120
Query: 121 SVPGLHAKEELDLSPSLEDDSCKNGWRAFATVAGEQEAGHLWDCATSLERESLLAGVPRH 180
SVPGLHAKEELDLSPSLEDDSCKNGWRAFATVAGEQEAGHLWDCATSLERESLLAGVPRH
Sbjct: 121 SVPGLHAKEELDLSPSLEDDSCKNGWRAFATVAGEQEAGHLWDCATSLERESLLAGVPRH 180
Query: 181 TGCCLQRATDSSGPEPVQGVAVQDLRGLSSVSLQKSRSESYLGIPVVWPFLLWCCELGRS 240
TGCCLQRATDSSGPEPVQGVAVQDLRGLSSVSLQKSRSESYLGIPVVWPFLLWCCELGRS
Sbjct: 181 TGCCLQRATDSSGPEPVQGVAVQDLRGLSSVSLQKSRSESYLGIPVVWPFLLWCCELGRS 240
Query: 241 WPHIHNRARAPVLPSRGPLDNTAPLGTRTKKESTLGPAGDTELLWSQPHSDVPCQPPLRT 300
WPHIHNRARAPVLPSRGPLDNTAPLGTRTKKESTLGPAGDTELLWSQPHSDVPCQPPLRT
Sbjct: 241 WPHIHNRARAPVLPSRGPLDNTAPLGTRTKKESTLGPAGDTELLWSQPHSDVPCQPPLRT 300
Query: 301 SCLLRTNRHHSAPETTGDKNRASPRLNCGHMRALVRAHSIAGFSPECPEDPVGQNVVKSG 360
SCLLRTNRHHSAPETTGDKNRASPRLNCGHMRALVRAHSIAGFSPECPEDPVGQNVVKSG
Sbjct: 301 SCLLRTNRHHSAPETTGDKNRASPRLNCGHMRALVRAHSIAGFSPECPEDPVGQNVVKSG 360
Query: 361 THVKEGAKNERDPRIQNIPSPAPTQLSGPIPAFQSGAPHLQGPCKPGGFRLQRASQDTPS 420
THVKEGAKNERDPRIQNIPSPAPTQLSGPIPAFQSGAPHLQGPCKPGGFRLQRASQDTPS
Sbjct: 361 THVKEGAKNERDPRIQNIPSPAPTQLSGPIPAFQSGAPHLQGPCKPGGFRLQRASQDTPS 420
Query: 421 AGLLGENQLRQDSRSCLVASCLTSELVKLSAEEVPEPAECKSEQSPESRTQEPQGTQLAP 480
AGLLGENQLRQDSRSCLVASCLTSELVKLSAEEVPEPAECKSEQSPESRTQEPQGTQLAP
Sbjct: 421 AGLLGENQLRQDSRSCLVASCLTSELVKLSAEEVPEPAECKSEQSPESRTQEPQGTQLAP 480
Query: 481 RAADERETQKHLWGISVQAGNQTSNYTSKYVLSEESKSPTRAKFPRQPSSEGTQVWSGDL 540
RAADERETQKHLWGISVQAGNQTSNYTSKYVLSEESKSPTRAKFPRQPSSEGTQVWSGDL
Sbjct: 481 RAADERETQKHLWGISVQAGNQTSNYTSKYVLSEESKSPTRAKFPRQPSSEGTQVWSGDL 540
Query: 541 MGCLEVSDSSDAPETTQKSSAIDTSKAAEEAMVLDPIYREQALQGLSEFKAATVSHCGPG 600
MGCLEVSDSSDAPETTQKSSAIDTSKAAEEAMVLDPIYREQALQGLSEFKAATVSHCGPG
Sbjct: 541 MGCLEVSDSSDAPETTQKSSAIDTSKAAEEAMVLDPIYREQALQGLSEFKAATVSHCGPG 600
Query: 601 AEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTE 660
AEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTE
Sbjct: 601 AEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTE 660
Query: 661 EPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGK 720
EPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGK
Sbjct: 661 EPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGK 720
Query: 721 RPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHH 780
RPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHH
Sbjct: 721 RPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHH 780
Query: 781 GDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSESCNAKRLKTTEKKLRARLA 840
GDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSESCNAKRLKTTEKKLRARLA
Sbjct: 781 GDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSESCNAKRLKTTEKKLRARLA 840
Query: 841 LAHKTFSNFIESIVLEKENTHERSPSSPKGEKEKSRLRQGSWRAFLKSKDAGSPKKPTLV 900
LAHKTFSNFIESIVLEKENTHERSPSSPKGEKEKSRLRQGSWRAFLKSKDAGSPKKPTLV
Sbjct: 841 LAHKTFSNFIESIVLEKENTHERSPSSPKGEKEKSRLRQGSWRAFLKSKDAGSPKKPTLV 900
Query: 901 SLPLGPEVLSPAETDSHCEERAEDKEGYVFSDHWAPPLASTPLSSSLVSPEHRRKSEPTI 960
SLPLGPEVLSPAETDSHCEERAEDKEGYVFSDHWAPPLASTPLSSSLVSPEHRRKSEPTI
Sbjct: 901 SLPLGPEVLSPAETDSHCEERAEDKEGYVFSDHWAPPLASTPLSSSLVSPEHRRKSEPTI 960
Query: 961 KCTATQEGGRYLPSGIFPEKSWLASPGSPRAQQAGIAHTLPSSSACCLAYENPGTPCRPT 1020
KCTATQEGGRYLPSGIFPEKSWLASPGSPRAQQAGIAHTLPSSSACCLAYENPGTPCRPT
Sbjct: 961 KCTATQEGGRYLPSGIFPEKSWLASPGSPRAQQAGIAHTLPSSSACCLAYENPGTPCRPT 1020
Query: 1021 SPKPLSPRPSAQRMGLHYPGRGSAISMVSLGSYSYVDSSSGDPERPKIPKGQTSFLLSLQ 1080
SPKPLSPRPSAQRMGLHYPGRGSAISMVSLGSYSYVDSSSGDPERPKIPKGQTSFLLSLQ
Sbjct: 1021 SPKPLSPRPSAQRMGLHYPGRGSAISMVSLGSYSYVDSSSGDPERPKIPKGQTSFLLSLQ 1080
Query: 1081 TLNQDEQKEESREGGQGPRGLGTVPWLRDLPGSESVPWRLRKVKSKAPSASLDQAMPSLP 1140
TLNQDEQKEESREGGQGPRGLGTVPWLRDLPGSESVPWRLRKVKSKAPSASLDQAMPSLP
Sbjct: 1081 TLNQDEQKEESREGGQGPRGLGTVPWLRDLPGSESVPWRLRKVKSKAPSASLDQAMPSLP 1140
Query: 1141 RAQSRGAQATATPRGGLSGAPLRLQADVSHTWAHGLRSWEGGR 1183
RAQSRGAQATATPRGGLSGAPLRLQADVSHTWAHGLRSWEGGR
Sbjct: 1141 RAQSRGAQATATPRGGLSGAPLRLQADVSHTWAHGLRSWEGGR 1183
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 66.2 bits (160), Expect = 2e-10
Identities = 75/248 (30%), Positives = 86/248 (34%), Gaps = 42/248 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP + GE+GP G K G P I G G G R G P+ +
Sbjct: 1332 GPRGDPGERGPRGPKGEPG----APGQVIGGEGPGLPGRKGDPGPSGPP-GPRGPLGDPG 1386
Query: 658 STEEP--PGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGA 715
P PG ++G+ GERGP EGG A P +P PQ P G
Sbjct: 1387 PRGPPGLPGTAMKGDK--GDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVG----- 1439
Query: 716 QEPGKRPTFSKVTSFRKGRPLATESPG-----------------GVPAPTTEGRRWGSSG 758
PGK+ G P SPG G P P E G G
Sbjct: 1440 -PPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERG 1498
Query: 759 P------EGLPR-ENPPAAAGRDAPPLHHGDASAWPEFVPQAAGD-RTAGPAGAGHTGTS 810
P GLP P A G + PP G E P GD GPA AG G
Sbjct: 1499 PPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGE--PGRPGDPAVVGPAVAGPKGEK 1556
Query: 811 GDLGSRGP 818
GD+G GP
Sbjct: 1557 GDVGPAGP 1564
Score = 53.1 bits (126), Expect = 2e-06
Identities = 74/253 (29%), Positives = 93/253 (36%), Gaps = 63/253 (24%)
Query: 599 PGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE- 655
PG GE+GP G AG + +P P + G G R + E G +
Sbjct: 2017 PGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDG 2076
Query: 656 ------TPSTEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQRPRVPALEPPQPP 708
TP PPG ++ + G SGE+GP G A+G+ P Q P
Sbjct: 2077 PPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPP-----GLKGAKGE----PGSNGDQGP 2127
Query: 709 RGLR-----KGAQ-EPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGL 762
+G R KG + EPG R + G P G+P G R G +GPEG
Sbjct: 2128 KGDRGVPGIKGDRGEPGPRG--------QDGNP-------GLP-----GER-GMAGPEGK 2166
Query: 763 PRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR-------------TAGPAGAGHTGT 809
P P G P HGD P P AG GP G G TG
Sbjct: 2167 PGLQGPR--GPPGPVGGHGDPG--PPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGP 2222
Query: 810 SGDLGSRGPSSES 822
+G +G GP S
Sbjct: 2223 TGAVGLPGPPGPS 2235
Score = 50.1 bits (118), Expect = 1e-05
Identities = 75/254 (29%), Positives = 92/254 (36%), Gaps = 51/254 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQG-AGDGALQRVAQAAELGRVLVPQAASEET 656
GP + GEQGP G + P G E ++G GD Q G L + +
Sbjct: 1979 GPKGDSGEQGPPGKEGPIGFPGE---RGLKGDRGDPGPQ-----GPPGLALGERGPPGPS 2030
Query: 657 PSTEEPPGERLRG-ESRSSGSGERG-PEEAPEGGAAAARGQR-----PRVPALEPPQPPR 709
EP + G R+ G GE G P E E G RG++ P +P P P
Sbjct: 2031 GLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPP 2090
Query: 710 GLRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--------GVPA--------------- 746
G + EPG + + KG S G GVP
Sbjct: 2091 GPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDG 2150
Query: 747 -PTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-A 804
P G R G +GPEG P P G P HGD P A G AGPAG
Sbjct: 2151 NPGLPGER-GMAGPEGKPGLQGP--RGPPGPVGGHGDPGP-----PGAPG--LAGPAGPQ 2200
Query: 805 GHTGTSGDLGSRGP 818
G +G G+ G GP
Sbjct: 2201 GPSGLKGEPGETGP 2214
Score = 50.1 bits (118), Expect = 1e-05
Identities = 77/258 (29%), Positives = 89/258 (34%), Gaps = 45/258 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G+ GP G AG PA P QG G + GR L + P
Sbjct: 2177 GPVGGHGDPGPPGAPGLAG-----PAGP-QGPS-GLKGEPGETGPPGRGLTGPTGAVGLP 2229
Query: 658 STEEPPGERLRGESRSSGS----GERGPEEAP-EGGAAAARGQR-----PRVPALEPPQP 707
P G L G S G GE G AP GA+ G R P P L P
Sbjct: 2230 GPPGPSG--LVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVG 2287
Query: 708 PRGLRKGAQEPGKRPTFSKVTSFRKGRP--LATESPG--------GVPAPTTEGRRWGSS 757
P+G PG+ KG P LA + G G+P P E G +
Sbjct: 2288 PKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRA 2347
Query: 758 GPEGLPRENPPAAAGRDAPPLHHGD------ASAWPEFVPQAAGDR-TAGPAGA------ 804
G G P E+ G P GD S P P GD G GA
Sbjct: 2348 GEPGDPGED--GQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGF 2405
Query: 805 -GHTGTSGDLGSRGPSSE 821
G TG G++G GPS E
Sbjct: 2406 PGQTGPRGEMGQPGPSGE 2423
Score = 48.1 bits (113), Expect = 5e-05
Identities = 70/242 (28%), Positives = 92/242 (38%), Gaps = 42/242 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECE-------LPA--APIQGAGD-GALQRVAQAAELGRVL 647
GP E+G+ GP G + G + E LP P GD G + +A G
Sbjct: 1551 GPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSG 1610
Query: 648 VPQAASEETPSTEEPPGERLRGESRSSGSGERGPEEAPEG-----GAAAARGQRPRVPAL 702
P + P PPG + R GE+G +E P G G A RG R P +
Sbjct: 1611 PP--GEKGDPGRPGPPGP-VGPRGRDGEVGEKG-DEGPPGDPGLPGKAGERGLR-GAPGV 1665
Query: 703 EPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPE 760
P +G + E G R G P ++ G G P P R +GP
Sbjct: 1666 RGPVGEKGDQGDPGEDG-----------RNGSPGSSGPKGDRGEPGPPGPPGRLVDTGP- 1713
Query: 761 GLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPS 819
G + P G++ P GD +P A G+R G G G G GD G RGP+
Sbjct: 1714 GAREKGEPGDRGQEGPRGPKGDPG-----LPGAPGER--GIEGFRGPPGPQGDPGVRGPA 1766
Query: 820 SE 821
E
Sbjct: 1767 GE 1768
Score = 42.7 bits (99), Expect = 0.002
Identities = 71/233 (30%), Positives = 86/233 (36%), Gaps = 34/233 (14%)
Query: 598 GPGA-EEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQRVAQAAELGRVLVPQAASE 654
GPGA E+GE G G + P G + + LP AP + +G + G V A E
Sbjct: 1712 GPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPG---VRGPAGE 1768
Query: 655 ETPSTEEPPGERLRGESRSSGS-GERGPEEAPEGGAAAARGQ-RPRVPALEPPQPPRGLR 712
+ PPG L G S G G GP P G A A R +P L Q G
Sbjct: 1769 K--GDRGPPG--LDGRSGLDGKPGAAGPS-GPNGAAGKAGDPGRDGLPGLRGEQGLPGPS 1823
Query: 713 KGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRW--GSSGPEGLPRENPPAA 770
PGK G+P G P +GR+ G SG G RE
Sbjct: 1824 GPPGLPGKPG--------EDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASG--RE----- 1868
Query: 771 AGRDAPPLHHGDASAW-PEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
GRD P G P+ P G GP G G G G G +G E+
Sbjct: 1869 -GRDGPKGERGAPGILGPQGPPGLPGP--VGPPGQGFPGVPGGTGPKGDRGET 1918
Score = 39.7 bits (91), Expect = 0.017
Identities = 62/245 (25%), Positives = 79/245 (32%), Gaps = 30/245 (12%)
Query: 598 GPGAEEGEQGPGGGKTPAG--------NECELPAAPIQGAGDGALQRVAQAAELGRVLVP 649
GP E G+ GP G + AG P P GA + G L
Sbjct: 2410 GPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPG 2469
Query: 650 QAASEETPSTE----EPPGERLRGESRSSGS-GERGPEEAPEGGAAAARGQRPRVPALEP 704
P P E RG + GS GERG E + G+A +G + +
Sbjct: 2470 PRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERG--EKGDVGSAGLKGDKGDSAVILG 2527
Query: 705 PQPPRGLRKGAQEPGKR-------PTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSS 757
P PRG + E G R P KG + PG + G R G
Sbjct: 2528 PPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKG---SKGEPGDKGSAGLPGLR-GLL 2583
Query: 758 GPEGLPR----ENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDL 813
GP+G P P + G+D P G+ P+ G G GD
Sbjct: 2584 GPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDK 2643
Query: 814 GSRGP 818
G GP
Sbjct: 2644 GEAGP 2648
Score = 39.3 bits (90), Expect = 0.022
Identities = 69/245 (28%), Positives = 83/245 (33%), Gaps = 52/245 (21%)
Query: 599 PGA--EEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEET 656
PGA + G GP G K AG E P P + GA + G V VP +
Sbjct: 2326 PGAKGDRGLPGPRGEKGEAGRAGE-PGDPGEDGQKGAPGPKGFKGDPG-VGVPGS----- 2378
Query: 657 PSTEEPPGER----LRGESRSSG-------SGERG----PEEAPEGGAAAARGQRPRVPA 701
P PPG + L G + G +G RG P + E G A G+
Sbjct: 2379 PGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGP 2438
Query: 702 LEPPQPP--------RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRR 753
L PP PP GL+ +PG G P G P E R
Sbjct: 2439 LGPPGPPGSVGPPGASGLKGDKGDPGV------------GLP-GPRGERGEPGIRGEDGR 2485
Query: 754 WGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDL 813
G GP GL PP + G G A + GD G G GD+
Sbjct: 2486 PGQEGPRGLT--GPPGSRGERGEKGDVGSAGLKGD-----KGDSAVILGPPGPRGAKGDM 2538
Query: 814 GSRGP 818
G RGP
Sbjct: 2539 GERGP 2543
Score = 38.5 bits (88), Expect = 0.038
Identities = 91/390 (23%), Positives = 147/390 (37%), Gaps = 72/390 (18%)
Query: 599 PGAE--EGEQGPGGGKTPAGNECELPAAPIQG-AGDGAL------QRVAQAAELGRVLVP 649
PG E G GP G + G + ++ +A ++G GD A+ R A+ ++G
Sbjct: 2486 PGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKG-DMGERGPR 2544
Query: 650 QAASEETPSTEE-PPGER-LRGESRSSGS-------GERGPEEAP-------------EG 687
++ P + PG++ +GE GS G GP+ P +
Sbjct: 2545 GLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKD 2604
Query: 688 GAAAARGQRPRVPALEPP--QPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVP 745
G RG++ V + P + RG++ G++ K + GRP G +
Sbjct: 2605 GVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKG--DKGEAGPPGRPGLAGHKGEMG 2662
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-- 803
P G+ G+ G EGL P G D P GD E G GP+G
Sbjct: 2663 EPGVPGQS-GAPGKEGLI--GPKGDRGFDGQPGPKGDQGEKGERGTPGIGG-FPGPSGND 2718
Query: 804 --AGHTGTSGDLGSRGPSS-ESCNAKRLKTTEKKLRARLALAHKTFSNFIESIVLEKENT 860
AG G G +G RGP + +R E+ + A + E+
Sbjct: 2719 GSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAP----------GVPGAPGERGEQ 2768
Query: 861 HERSPSSPKGEKEKSRLRQGSWRAFLKSK------------DAGSPKKPTLVSLPLGPEV 908
P+ P+GEK ++ L + R F++ + +GS P+ + G ++
Sbjct: 2769 GRPGPAGPRGEKGEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLPSYAADTAGSQL 2828
Query: 909 LS-PAETDSHCEER----AEDKEGYVFSDH 933
+ P SH EE ED E +S++
Sbjct: 2829 HAVPVLRVSHAEEEERVPPEDDEYSEYSEY 2858
Score = 33.1 bits (74), Expect = 1.6
Identities = 46/179 (25%), Positives = 63/179 (35%), Gaps = 30/179 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECEL--PAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE 655
G ++GE GP G AG++ E+ P P Q G + + G +
Sbjct: 2638 GEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRG--------FDG 2689
Query: 656 TPSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGA 715
P + GE +GE + G G +G A P P P+ P GL+
Sbjct: 2690 QPGPKGDQGE--KGERGTPGIGGFPGPSGNDGSAGP-----PGPPGSVGPRGPEGLQ--G 2740
Query: 716 QEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRD 774
Q+ + P +V G P GVP E G GP G E AA D
Sbjct: 2741 QKGERGPPGERVV----GAP-------GVPGAPGERGEQGRPGPAGPRGEKGEAALTED 2788
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 60.1 bits (144), Expect = 1e-08
Identities = 72/269 (26%), Positives = 101/269 (37%), Gaps = 29/269 (10%)
Query: 558 KSSAIDTSKAAEEAMVLD-PIYREQALQGLSEFKAATVSHCG-----PGAEEGEQGPGGG 611
+SS+ D S A+ + L P++ +A+ L+ + A + G P A+ G G G
Sbjct: 3649 QSSSKDRSAASTPSKALKFPVHPRKAVGSLAPGELARGTENGMKPATPKAKPGPSSQGSG 3708
Query: 612 KTPAGNECELPAAPIQGAGDGALQRVAQAAELG---RVLVPQAASEETPSTEEPPGERLR 668
G + + P +G + A+ R P+ + G R
Sbjct: 3709 SPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPERLPARAQAKSCTKGPREA 3768
Query: 669 GESRSSGSGERGPEEAPEGGAAAARGQRP------------RVPALEPPQPPRGLRKGAQ 716
GE GS GP+E E +GQ P R P+ P +PPR RK A
Sbjct: 3769 GEQGPHGS--LGPKEKGESSTKRKKGQVPGPARSESVGSFGRAPSA-PDKPPRTPRKQAT 3825
Query: 717 EPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPP----AAAG 772
PT K S K RP +E P T R G + P+G P PP A G
Sbjct: 3826 PSRVLPTKPKPNSQNKPRPPPSEQRKAEPGHTQRKDRLGKAFPQGRPLLRPPKRGTAVHG 3885
Query: 773 RD-APPLHHGDASAWPEFVPQAAGDRTAG 800
+ A P H A A + + Q G R G
Sbjct: 3886 AEPAEPHTHRTAEAQSDLLSQLFGQRLTG 3914
Score = 51.6 bits (122), Expect = 4e-06
Identities = 136/601 (22%), Positives = 194/601 (32%), Gaps = 127/601 (21%)
Query: 598 GPGAEEGEQGPGG--GKTPAGNECELPAAPIQGAGDGALQRVAQAAELGR------VLVP 649
GP + G QG G GKTP E +LPA G AL + G V P
Sbjct: 510 GPEWQGGSQGALGTAGKTPGPRE-KLPAVRSSQGGSPALFTYNGMTDPGAQPLFFGVAQP 568
Query: 650 QAASEETPSTEEP--------------PGERLRGESRSSGSGERGPEEAPEGGAAAARGQ 695
Q + TPS P P G + SS S P + G
Sbjct: 569 QVSPHGTPSLPPPRVVGASPSESPLPSPATNTAGSTCSSLSPMSSSPANPSSEESQLPGP 628
Query: 696 RPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFR----KGRPLATESPGG-------- 743
PP P+ G+ P P S T ++ K P + G
Sbjct: 629 LGPSAFFHPPTHPQ--ETGSPFPSPEPPHSLPTHYQPEPAKAFPFPADGLGAEGAFQCLE 686
Query: 744 -VPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
P P EG G G +G PR PP P HH S+
Sbjct: 687 ETPFPH-EGPEVGRGGLQGFPRAPPPY-------PTHHFSLSS----------------- 721
Query: 803 GAGHTGTSGDLGSRGPSSESCNAKRLKTTEKKLRARLALAHKTFSNFIESIVLEKENTHE 862
S ++ L A LAH+ F ++ ++ H+
Sbjct: 722 -----------ASLDQLDVLLTCRQCDRNYSSLAA--FLAHRQFCGL---LLARAKDGHQ 765
Query: 863 RSPSSPKGEKEKSRLRQGSWRAFLKSKDAGSPKKPTLVSLPLGPE--VLSPAETDSHCEE 920
RSP P G P P +P +LS A+T +
Sbjct: 766 RSPGPP-----------------------GLPSPPAAPRVPADAHAGLLSHAKTFLLAGD 802
Query: 921 RAEDKEGYVFSDHWAPPLAST--PLSSSLVSPEHRRKSEPTIKCTATQEGGRYLPSGIFP 978
+ + + P LA+T PL +S + E K + I T G Y
Sbjct: 803 AQAEGKDDPLRTGFLPSLAATPFPLPASDLDMEDDAKLDSLI--TEALNGMEYQSDNPEI 860
Query: 979 EKSWL-----ASPGSPRAQQAGIAHTLPSSSACCLAYENPGTPCRPTSPKPLSPRPSAQR 1033
+ S++ P PR +G H L S + + P P +P P +PRP +
Sbjct: 861 DSSFIDVFADEEPSGPRGPSSG--HPLKSKAGVTPESKAP-PPLPAATPDPQTPRPGDRG 917
Query: 1034 MGLHYPGRGSAISMVSLGSYSYVDSSSGDPERPKIPKGQTSFLLSLQTLNQDEQKEESRE 1093
P RG S + + P + + + L + L+ E S
Sbjct: 918 C----PARGRP----KTRSLGLAPTEADAPSQGRQQRRGKQLKLFRKDLDSGGAAEGSGS 969
Query: 1094 GGQGPRGLGTVPWLRDLPGSESVPWRLRKVKSKAPSASLDQAMPSLPRAQSRGAQATATP 1153
GG G R G P D G E P R R+ +++AP + D A P +PRA + + ++
Sbjct: 970 GG-GGRASGLRPRRNDGLG-ERPPPRPRRPRTQAPGSRADPA-PRVPRAAALPEETRSSR 1026
Query: 1154 R 1154
R
Sbjct: 1027 R 1027
Score = 38.9 bits (89), Expect = 0.029
Identities = 82/341 (24%), Positives = 112/341 (32%), Gaps = 61/341 (17%)
Query: 516 SKSPTRAKFPRQPSSEGTQVWSGDLMGCLEVSDSSDAPETTQKSS-AIDTSKAAEEAMVL 574
S+S + + P + SS G L L + S AP ++ A + AA L
Sbjct: 2047 SRSGSEGRTPERASSPG-------LNKPLLATGDSPAPSVGDLAACAPSPTSAAHMPCSL 2099
Query: 575 DPIYREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQ------- 627
P+ RE L S QG GG+ PA C P P Q
Sbjct: 2100 GPLPREDPLTSPSR----------------AQGGLGGQLPASPSCRDPPGPQQLLACSPA 2143
Query: 628 ----GAGDGALQRVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGSGERGPEE 683
DG AE V P + E G L+GE GS P
Sbjct: 2144 WAPLEEADGVQATTDTGAEDSPVAPPSLTTSPCDPKEALAGCLLQGE----GSPLEDPSS 2199
Query: 684 APEGGAAAA----RGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATE 739
P G +A G P+ L P+ R K + PG+ S + +A
Sbjct: 2200 WPPGSVSAVTCTHSGDTPKDSTLRIPEDSR-KEKLWESPGR--ATSPPLAGAVSPSVAVR 2256
Query: 740 SPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTA 799
+ G PT + + G GLP +P + R APP H + P + TA
Sbjct: 2257 ATGLSSTPTGDEAQAG----RGLPGPDPQS---RGAPP--HTNPDRMPRGHSSYSPSNTA 2307
Query: 800 ------GPAGAGHTGTSGDLGSRGPSSESCNAKRLKTTEKK 834
G A L GP S +C + T+ K+
Sbjct: 2308 RLGHREGQAVTAVPTEPPTLQGAGPDSPACLEGEMGTSSKE 2348
Score = 37.0 bits (84), Expect = 0.11
Identities = 54/231 (23%), Positives = 76/231 (32%), Gaps = 22/231 (9%)
Query: 601 AEEGEQ----GPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEET 656
+EE EQ GPG E QG + Q+ +AA +A +
Sbjct: 1070 SEEDEQPPPRGPGFRGRRGRGEKRKEVELTQGPREDEPQKPRKAAR------QEAGGDGA 1123
Query: 657 PSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARG-----QRPRVPALEPPQPPRGL 711
P+ E PG G RS + RGP + E GAAA G RP V +P Q P
Sbjct: 1124 PANPEEPGGSRPGPGRSPQA--RGPSRSLETGAAAREGGPKCADRPSVAPKDPLQVPTNT 1181
Query: 712 RKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAA 771
+ RP+ ++ P E TE R + G +P
Sbjct: 1182 ETSEE---TRPSLDFPQEAKE--PETAEESAPDSTEFTEALRSPPAACAGEMGASPGLLI 1236
Query: 772 GRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
PP H + P + P + G G++ P S +
Sbjct: 1237 PEQPPPSRHDTGTPKPSGSLANTAPHGSSPTPGVGSLLGGPGGTQAPVSHN 1287
Score = 36.6 bits (83), Expect = 0.15
Identities = 55/206 (26%), Positives = 80/206 (38%), Gaps = 28/206 (13%)
Query: 611 GKTPAGNEC---ELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTEEPPGERL 667
G AG + ELP A + A DG L+ + + + S +TP P L
Sbjct: 47 GAREAGGQAQAMELPEAQPRQARDGELKPPSLRGQAPSSTPGKRGSPQTPPGRSP----L 102
Query: 668 RGESRSSGSGERGPEEAPEGGAAAAR-----GQRPRVPALEPPQ-----PPRGLRKGAQ- 716
+ SR +G E P + G A++R + P P LE Q P+G GA
Sbjct: 103 QAPSRLAGRAEGSPPQRYILGIASSRTKPTLDETPENPQLEAAQLPEVDTPQGPGTGAPL 162
Query: 717 EPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAP 776
PG T ++ + G + P P+ T S P PP + G
Sbjct: 163 RPGLPRTEAQPAAEELGFHRCFQEP---PSSFTSTNYTSPSATPRPPAPGPPQSRG--TS 217
Query: 777 PLHHGDASAWPEFVPQAAGDRTAGPA 802
PL G ++PE+ QA+G + PA
Sbjct: 218 PLQPG---SYPEY--QASGADSWPPA 238
Score = 36.6 bits (83), Expect = 0.15
Identities = 133/629 (21%), Positives = 204/629 (32%), Gaps = 137/629 (21%)
Query: 242 PHIHNRARAPVLPSRGPLDNTAPLGTRTKKESTLGPAGDTELLWSQPHSDVPCQPPLRTS 301
PH N R P S NTA LG R + T P L + P S + + TS
Sbjct: 2287 PHT-NPDRMPRGHSSYSPSNTARLGHREGQAVTAVPTEPPTLQGAGPDSPACLEGEMGTS 2345
Query: 302 CLLRTNRHHSAPETTGDKNRASPRLNC-----GHMRALVRAHSIAGFSPECPE------- 349
+ PET PR+ C G R + + + F + P+
Sbjct: 2346 S--KEPEDPGTPETGRSGATKMPRVTCPSTGLGLGRTTAPSSTASDFQSDSPQSHRNASH 2403
Query: 350 -----DPVGQNVVK--SGTHVKEGAKNERDPRIQNIPSPAPTQLSGPIPAFQSGAPHLQG 402
DP+G +K S + K+ A E P GP+ A G
Sbjct: 2404 QTPQGDPLGPQDLKQRSRGYKKKPASTENGQWKGQAPH-------GPVTCEVCAASFRSG 2456
Query: 403 PCKPGGFRLQRASQDTPSAGLLGENQLR----QDSRSCLVASCLT--SELVKLSAEEVPE 456
P G +A + P G E Q L C + ++S +E P
Sbjct: 2457 P----GLSRHKARKHRPHPGAPAEPSPAALPAQQPLEPLAQKCQPPRKKSHRVSGKERPN 2512
Query: 457 PAECKSEQSPESRTQEP--QGTQLAPRAADERETQKHLWGISVQAGNQTSNYTSKYVLSE 514
S P TQ P QG++ RA +Q+ + + T + +
Sbjct: 2513 ----HSRGDPSHVTQPPPAQGSKEVLRAPGSPHSQQ------LHPPSPTEHEVDVKTPAS 2562
Query: 515 ESKSPTRAK----FPRQPSSEGTQVWSGDLMGCLEVSDSSDAPETTQKSSAIDTSKAAEE 570
+ + P +A+ P+Q + W + S S ++ +K + + EE
Sbjct: 2563 KPR-PDQAREDELHPKQAEKREGRRWRREPT---VDSPSHSEGKSNKKRGKLRGRRLREE 2618
Query: 571 AMVLDPIYREQALQGLSEFK-------AATVSHC-----GPGAEEGEQGPGGGKTPAGNE 618
+++ P+ + G AA+ SHC GP A+ GEQ P
Sbjct: 2619 SIL--PVSADVISDGRGSRPSPAMASYAASPSHCLSVEGGPEAD-GEQPPR--------- 2666
Query: 619 CELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTEEPPGERL----------- 667
+ G G ++ A+ + +A ++PPG+R+
Sbjct: 2667 -------LATLGPGVMEGAAETDQ-------EALCAGETGAQKPPGDRMLCPGRMDGAAL 2712
Query: 668 ----RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPA-----------LEPPQPPRGLR 712
G+ +S G GP E G G P + E PP G
Sbjct: 2713 GEQPTGQKGASARGFWGPRETKALGVCKESGSEPAEDSSRAHSRSEEGVWEENTPPLG-P 2771
Query: 713 KGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAG 772
G E P S +S +G P ++ GGV GPEG P + ++
Sbjct: 2772 LGFPETSSSPADSTTSSCLQGLPDNPDTQGGV------------QGPEG-PTPDASGSSA 2818
Query: 773 RDAPPLHHGDASAWPEFVPQAAGDRTAGP 801
+D P L + S F P R P
Sbjct: 2819 KDPPSLFDDEVSFSQLFPPGGRLTRKRNP 2847
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 59.7 bits (143), Expect = 2e-08
Identities = 78/244 (31%), Positives = 92/244 (37%), Gaps = 58/244 (23%)
Query: 599 PGAE--EGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEET 656
PGA G QGPGG P GN E P AP GA E G V
Sbjct: 412 PGARGPSGPQGPGGPPGPKGNSGE-PGAPGSKGDTGA------KGEPGPV---------- 454
Query: 657 PSTEEPPGERLRGESRSSGS-GERGPEEAP----EGGAAAARGQRPRVPALEPPQPPRGL 711
+ PPG GE G+ GE GP P E G +RG P + P+ P G
Sbjct: 455 -GVQGPPGP--AGEEGKRGARGEPGPTGLPGPPGERGGPGSRG-FPGADGVAGPKGPAGE 510
Query: 712 RKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRW--GSSGPEGLPRENPPA 769
R G KG P PG P +G GS GP+G + PP
Sbjct: 511 RGSPGPAGP-----------KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG--KTGPPG 557
Query: 770 AAGRD------APPLHHGDASAW----PEFV---PQAAGDR-TAGPAGA-GHTGTSGDLG 814
AG+D PP G A P+ P AG+R GP GA G G G+ G
Sbjct: 558 PAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAG 617
Query: 815 SRGP 818
++GP
Sbjct: 618 AQGP 621
Score = 58.5 bits (140), Expect = 4e-08
Identities = 69/225 (30%), Positives = 77/225 (34%), Gaps = 39/225 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G GP G PAG E G G A G V P
Sbjct: 884 GPPGPSGNAGPPGPPGPAGKE----------GGKGPRGETGPAGRPGEVGPPG------- 926
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAP-EGGAAAARGQRPRV--PALEPPQPPRGLRKG 714
PPG GE S G+ GP AP G GQR V P + GL
Sbjct: 927 ----PPGPA--GEKGSPGAD--GPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP 978
Query: 715 AQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRD 774
+ EPGK+ S +G P P G+ P E R G+ G EG P GRD
Sbjct: 979 SGEPGKQGPSG--ASGERGPP-GPMGPPGLAGPPGESGREGAPGAEGSP--------GRD 1027
Query: 775 APPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPS 819
P GD P A P G G SGD G GP+
Sbjct: 1028 GSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA 1072
Score = 55.8 bits (133), Expect = 2e-07
Identities = 75/253 (29%), Positives = 89/253 (35%), Gaps = 40/253 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-T 656
GP E G GP G K G A + GA G G+ P A ++
Sbjct: 506 GPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA-KGLTGSPGSPGPDGKTGPPGPAGQDGR 564
Query: 657 PSTEEPPGER-------LRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPP 705
P PPG R G ++G +GERG P GA G+ A PP
Sbjct: 565 PGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP--GAVGPAGKDGEAGAQGPP 622
Query: 706 QP--PRGLRKGAQEPGKRPTFSKVTS-----FRKGRPLATESPGGVPAPTTEGRRWGSSG 758
P P G +G Q P P F + G+P PG + AP G R G
Sbjct: 623 GPAGPAG-ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGAR----G 677
Query: 759 PEGLPRE----NPPAAAG-RDAPPLHHGDASAWPEFVPQAAGDRTA-------GPAG-AG 805
G P E PP AG R A D + P A G + A G G AG
Sbjct: 678 ERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG 737
Query: 806 HTGTSGDLGSRGP 818
G GD G GP
Sbjct: 738 LPGPKGDRGDAGP 750
Score = 54.7 bits (130), Expect = 5e-07
Identities = 69/255 (27%), Positives = 93/255 (36%), Gaps = 45/255 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G E G GP G PAG + E A G A +R Q + P
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP------AGSPGFQGLP 646
Query: 658 STEEPPGERLRGESRSSGSGERG-PEEAPEGGAAAARGQR--PRVPALEPPQPPRGLRKG 714
PPGE + GE+G P + G + ARG+R P ++ P P G R
Sbjct: 647 GPAGPPGE-------AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGA 699
Query: 715 AQEPGKRPTFSKVTSFRKGRPLATESPG-----------GVPAPTTEGRRWGSSGPEGLP 763
PG +K + G P + +PG G+P P + G G +G P
Sbjct: 700 NGAPGN--DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSP 757
Query: 764 REN----------PPAAAGRDAPPLHHGDAS-AWPEFVPQAAGDR----TAGPAG-AGHT 807
++ PP AG G + A P A GDR GPAG AG
Sbjct: 758 GKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPP 817
Query: 808 GTSGDLGSRGPSSES 822
G G G++G ++
Sbjct: 818 GADGQPGAKGEPGDA 832
Score = 52.8 bits (125), Expect = 2e-06
Identities = 65/255 (25%), Positives = 89/255 (34%), Gaps = 40/255 (15%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAA--- 652
H G +G +G G P G P +P + G + E GR P A
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGE----PGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Query: 653 -SEETPSTEEPPGERLRGESRSSG-------SGERGPEEAPEG--GAAAARGQRPRVPAL 702
++ PPG G + G GE GP+ P G G RG+ P P
Sbjct: 323 GNDGATGAAGPPGPT--GPAGPPGFPGAVGAKGEAGPQ-GPRGSEGPQGVRGE-PGPPGP 378
Query: 703 EPPQPPRGLRKGAQEPGKR-----PTFSKVTSFRKGR-PLATESPGGVPAPTTEGRRWGS 756
P G +PG + P + F R P + PGG P P G+
Sbjct: 379 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGA 438
Query: 757 SGPEG----------LPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGH 806
G +G + + PP AG + G+ P +P G+R GP G
Sbjct: 439 PGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG--PTGLPGPPGER-GGPGSRGF 495
Query: 807 TGTSGDLGSRGPSSE 821
G G G +GP+ E
Sbjct: 496 PGADGVAGPKGPAGE 510
Score = 52.8 bits (125), Expect = 2e-06
Identities = 76/241 (31%), Positives = 93/241 (38%), Gaps = 51/241 (21%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGD-GALQRVAQAAELGRVLVP-QAAS 653
+ GP G G GGK P G P G+ G A E G A +
Sbjct: 891 NAGPPGPPGPAGKEGGKGPRGE-----TGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945
Query: 654 EETPSTEEPPGER----LRGESRSSG-SGERGPEEAP-EGGAAAARGQRPRVPALEPPQP 707
TP + G+R L G+ G G GP P + G + A G+R PP P
Sbjct: 946 PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGER------GPPGP 999
Query: 708 --PRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE 765
P GL A PG+ S R+G P A SPG +P +G R G +GP G
Sbjct: 1000 MGPPGL---AGPPGE--------SGREGAPGAEGSPGRDGSPGAKGDR-GETGPAG---- 1043
Query: 766 NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR----TAGPAG-AGHTGTSGDLGSRGPSS 820
PP A G P G A +GDR AGPAG G G G G +GP
Sbjct: 1044 -PPGAPGAPGAPGPVGPAG--------KSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Query: 821 E 821
+
Sbjct: 1095 D 1095
Score = 51.2 bits (121), Expect = 6e-06
Identities = 71/247 (28%), Positives = 85/247 (34%), Gaps = 33/247 (13%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP E GEQGP G +P PA P AG Q V +LG A E
Sbjct: 626 GPAGERGEQGPAG--SPGFQGLPGPAGPPGEAGKPGEQGVP--GDLGAPGPSGARGERGF 681
Query: 656 --TPSTEEPPGER-LRGESRSSGS----GERGPEEAPEGGAAAARGQRPRVPALEPPQPP 708
+ PPG RG + + G+ G+ G AP A P P
Sbjct: 682 PGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP 741
Query: 709 RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP----- 763
+G R A G + K P+ P G P E G +GP G
Sbjct: 742 KGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGD 801
Query: 764 --RENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR-------TAGPAGA----GHTGTS 810
PP AG PP G A E P AG + AGPAG G+ G
Sbjct: 802 RGEPGPPGPAGFAGPPGADGQPGAKGE--PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP 859
Query: 811 GDLGSRG 817
G G+RG
Sbjct: 860 GAKGARG 866
Score = 50.8 bits (120), Expect = 7e-06
Identities = 148/588 (25%), Positives = 191/588 (32%), Gaps = 111/588 (18%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP E GE G G P G P P + DG + + E G PQ A P
Sbjct: 203 GPPGEPGEPGASGPMGPRGP----PGPPGKNGDDGEAGKPGRPGERGPP-GPQGA-RGLP 256
Query: 658 STEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQ--RPRVPALEPPQPPRGLRKG 714
T PG ++G SG G +G + G A +G+ P PRGL
Sbjct: 257 GTAGLPG--MKGHRGFSGLDGAKG-----DAGPAGPKGEPGSPGENGAPGQMGPRGL--- 306
Query: 715 AQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRD 774
PG+R GRP G P P G++G G PP G
Sbjct: 307 ---PGER-----------GRP-------GAPGPAGARGNDGATGAAG-----PPGPTGPA 340
Query: 775 APPLHHGDASAWPEFVPQAAGDR-TAGPAGA-GHTGTSGDLGSRGPSSESCNAKRLKTTE 832
PP G A E PQ G R + GP G G G G G+ GP+ +
Sbjct: 341 GPPGFPGAVGAKGEAGPQ--GPRGSEGPQGVRGEPGPPGPAGAAGPAGN-------PGAD 391
Query: 833 KKLRARLALAHKTFSNFIESIVLEKENTHERSPSSPKGE--KEKSRLRQGSWRAFLKSKD 890
+ A+ A N I R PS P+G + G A D
Sbjct: 392 GQPGAKGA-------NGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGD 444
Query: 891 AGSPKKPTLVSLPLGPEVLSPAETDSHCEERAEDKEGYV---FSDHWAPPLASTPLSSSL 947
G+ +P V + P PA + R E + + P P + +
Sbjct: 445 TGAKGEPGPVGVQGPP---GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGV 501
Query: 948 VSPE----HRRKSEPTIKCTATQEGGRYLPSGIFPEKSWLASPGSPRAQQAGIAHTLPSS 1003
P+ R P + E GR +G+ K SPGSP T P
Sbjct: 502 AGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD----GKTGPPG 557
Query: 1004 SACCLAYENPGTPCRPTSPKPLSPRPSAQRMGLHYPG-RGSAISMVSLGSYSYVDSSSGD 1062
A G RP P P R A MG +PG +G+A G G
Sbjct: 558 PA--------GQDGRPGPPGPPGARGQAGVMG--FPGPKGAAGEPGKAG-------ERGV 600
Query: 1063 PERPKI--PKGQTSFLLSLQTLNQDEQKEESREGGQGPRGLGTVPWLRDLPGSESVPWRL 1120
P P P G+ + Q G +G +G P + LPG P
Sbjct: 601 PGPPGAVGPAGKDG-----EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 655
Query: 1121 RKVKSKAPSASLDQAMPSLPRAQ-----SRGAQATATPRG--GLSGAP 1161
K + L PS R + RG Q P G G +GAP
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAP 703
Score = 50.8 bits (120), Expect = 7e-06
Identities = 72/241 (29%), Positives = 89/241 (36%), Gaps = 55/241 (22%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP E G+QGP G G P P+ G E GR P A E +P
Sbjct: 977 GPSGEPGKQGPSGASGERG-----PPGPMGPPG-----LAGPPGESGREGAPGA--EGSP 1024
Query: 658 STEEPPGERL-RGESRSSG-------------------SGERGPEEAPEGGAAAARGQRP 697
+ PG + RGE+ +G SG+RG E P G A
Sbjct: 1025 GRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG-ETGPAGPAGPVGPVGA 1083
Query: 698 RVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSS 757
R PA PQ PRG + E G R + R L + P G P E G+S
Sbjct: 1084 RGPA--GPQGPRGDKGETGEQGDRG----IKGHRGFSGL--QGPPGPPGSPGEQGPSGAS 1135
Query: 758 GPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
GP G PR PP +AG +G +P G P G TG +G +G G
Sbjct: 1136 GPAG-PR-GPPGSAGAPGKDGLNG--------LPGPIGP----PGPRGRTGDAGPVGPPG 1181
Query: 818 P 818
P
Sbjct: 1182 P 1182
Score = 45.1 bits (105), Expect = 4e-04
Identities = 75/265 (28%), Positives = 84/265 (31%), Gaps = 53/265 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP + G+ GP G G DG G P E P
Sbjct: 740 GPKGDRGDAGPKGADGSPGK-------------DGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 658 STEE-PPGERL----RGESRSSG-SGERGPEEAP-------EGGAAAARGQRPRVPALEP 704
S P G R RGE G +G GP A E G A A+G P
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846
Query: 705 PQPP-----------RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPT-TEGR 752
PP +G R A PG P P G P P EG
Sbjct: 847 AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGG 906
Query: 753 RW--GSSGPEGLPRE----NPPAAAGRDAPPLHHGDASAWPEFVPQA-AGDR-TAGPAG- 803
+ G +GP G P E PP AG P G A A PQ AG R G G
Sbjct: 907 KGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 966
Query: 804 ------AGHTGTSGDLGSRGPSSES 822
G G SG+ G +GPS S
Sbjct: 967 RGERGFPGLPGPSGEPGKQGPSGAS 991
Score = 43.1 bits (100), Expect = 0.002
Identities = 48/168 (28%), Positives = 60/168 (35%), Gaps = 25/168 (14%)
Query: 655 ETPSTEEPPGERLRGESRSSGS-GERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
E+P+ +E G + G +G G RGP P + P P PP PP
Sbjct: 100 ESPTDQETTG--VEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPG--PPGPPG---- 151
Query: 714 GAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGR 773
PG F+ S+ +S GG+ P G SGP GLP PP A G
Sbjct: 152 ---PPGLGGNFAPQLSYGYDE----KSTGGISVPGP----MGPSGPRGLP--GPPGAPGP 198
Query: 774 DA---PPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGP 818
PP G+ A P+ G G G G RGP
Sbjct: 199 QGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGP 246
Score = 42.7 bits (99), Expect = 0.002
Identities = 72/255 (28%), Positives = 86/255 (33%), Gaps = 47/255 (18%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G G G K AG P AP GA E G +P +
Sbjct: 695 GPRGANGAPGNDGAKGDAG----APGAP---GSQGAPGLQGMPGERGAAGLPGPKGDRGD 747
Query: 658 STEE-----PPGERLRGESRSSG----------SGERGPEEAPEG--GAAAARGQR---- 696
+ + P + +RG + G GE GP P G GA A G R
Sbjct: 748 AGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPS-GPAGPTGARGAPGDRGEPG 806
Query: 697 PRVPALEPPQPPRGLRKGAQ-EPGKRPTFSKVTSFRKGRPLATESP-GGVPAPTTEGRRW 754
P PA P + GA+ EPG P P G V AP +G R
Sbjct: 807 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR- 865
Query: 755 GSSGPEGLP-------RENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGH 806
GS+GP G R PP +G PP G A + G G G AG
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG-------KEGGKGPRGETGPAGR 918
Query: 807 TGTSGDLGSRGPSSE 821
G G G GP+ E
Sbjct: 919 PGEVGPPGPPGPAGE 933
Score = 42.7 bits (99), Expect = 0.002
Identities = 58/205 (28%), Positives = 68/205 (33%), Gaps = 52/205 (25%)
Query: 594 VSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAAS 653
V G + GE GP G PAG P P+ G PQ
Sbjct: 1057 VGPAGKSGDRGETGPAG---PAG-----PVGPVGARGPAG---------------PQGPR 1093
Query: 654 EETPSTEEPPGERLRGESRSSG-SGERGPEEAP-EGGAAAARGQRPRVPALEPPQPPRGL 711
+ T E ++G SG G GP +P E G + A G P PRG
Sbjct: 1094 GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASG----------PAGPRGP 1143
Query: 712 RKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAA 771
A PGK G P P G P P R G +GP G P PP
Sbjct: 1144 PGSAGAPGK--------DGLNGLP----GPIGPPGPR---GRTGDAGPVGPP--GPPGPP 1186
Query: 772 GRDAPPLHHGDASAWPEFVPQAAGD 796
G PP D S P+ + A D
Sbjct: 1187 GPPGPPSAGFDFSFLPQPPQEKAHD 1211
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 57.4 bits (137), Expect = 8e-08
Identities = 67/233 (28%), Positives = 85/233 (36%), Gaps = 52/233 (22%)
Query: 594 VSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAAS 653
V GP E+G +GP G P G+ G + + +LG +P
Sbjct: 813 VGQIGPRGEDGPEGPKGRAGPTGD-------------PGPSGQAGEKGKLGVPGLPGYPG 859
Query: 654 EETP--STEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRG 710
+ P ST P GE + G +G+ GP RGQR P PRG
Sbjct: 860 RQGPKGSTGFPGFPGANGEKGARGVAGKPGP-----------RGQR-------GPTGPRG 901
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP-RENPPA 769
R GA+ P +P P T G P P E G GP G P + PP
Sbjct: 902 SR-GARGPTGKP-----------GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG 949
Query: 770 AAGRDAPPLH---HGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGP 818
G+D P H G+ + P G GP G G TG G+ G GP
Sbjct: 950 PPGKDGLPGHPGQRGETGFQGKTGPPGPGG-VVGPQGPTGETGPIGERGHPGP 1001
Score = 52.8 bits (125), Expect = 2e-06
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 39/240 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP GE+G G P G LP P G E G PQ +
Sbjct: 1066 GPVGSPGERGSAGTAGPIG----LPGRPGPQGPPGPAGEKGAPGEKG----PQGPAGRD- 1116
Query: 658 STEEPPGERLRGESRSSGS-GERGPE-EAPEGGAAAARGQR-----PRVPALEPPQPPRG 710
+ P G L G + +GS GE G + E E G ++G + P P L+ P G
Sbjct: 1117 GVQGPVG--LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPG 1174
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--------GVPAPTTEGRRWGSSGPEGL 762
+ G EPG P + +KG A PG G+P P E G GP G
Sbjct: 1175 IAGGDGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGP 1232
Query: 763 PRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
P PP G P G PQ G G G G+ G+ GP E+
Sbjct: 1233 P--GPPGPRGPQGPNGADG---------PQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1281
Score = 51.2 bits (121), Expect = 6e-06
Identities = 68/235 (28%), Positives = 86/235 (36%), Gaps = 40/235 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEET- 656
GP G GP G P G + LP P Q G+ Q G V+ PQ + ET
Sbjct: 934 GPQGPVGFPGPKGPPGPPGKD-GLPGHPGQ-RGETGFQGKTGPPGPGGVVGPQGPTGETG 991
Query: 657 -------PSTEEPPGER-LRGESRSSGS-GERGPEE-APEGGAAAARGQRPRVPALEPPQ 706
P PPGE+ L G + G+ G+ GP+ + + G A RG P L Q
Sbjct: 992 PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF-PGERGLPGAQ 1050
Query: 707 PPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPREN 766
GL+ G G PG V +P G G++GP GLP
Sbjct: 1051 GAPGLKGGEGPQGP--------------------PGPVGSPGERGSA-GTAGPIGLP--- 1086
Query: 767 PPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSE 821
G PP G+ A E PQ R G G +G GS G +
Sbjct: 1087 --GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGD 1139
Score = 47.4 bits (111), Expect = 8e-05
Identities = 72/237 (30%), Positives = 87/237 (36%), Gaps = 45/237 (18%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G GP G + P G P GD GR +P A
Sbjct: 457 GPAGPAGIMGPPGLQGPTG--------PPGDPGD--------RGPPGRPGLPGA-----D 495
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
PPG L R G G +GP + + A A Q+ R+ AL P P GL
Sbjct: 496 GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARI-ALRGPPGPMGL---TGR 551
Query: 718 PGKRPTFSKVTSFRKGR-----PLATESPGGVPAPTTE-GRRW--GSSGPEGLPRENPPA 769
PG P +S KG P G P PT + G+R G+ G G+P E P
Sbjct: 552 PG--PVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE--PG 607
Query: 770 AAGR---DAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSES 822
A G D P GD E PQ GP G G G G++G RG E+
Sbjct: 608 AKGDRGFDGLPGLPGDKGHRGERGPQG----PPGPPGDDGMRGEDGEIGPRGLPGEA 660
Score = 44.3 bits (103), Expect = 7e-04
Identities = 72/278 (25%), Positives = 90/278 (32%), Gaps = 72/278 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP GE GP G P G P AP Q G +G PQ
Sbjct: 652 GPRGLPGEAGPRGLLGPRGT----PGAPGQPGMAGVDGPPGPKGNMG----PQGEPGPPG 703
Query: 658 STEEPPGERLRGESRSSGS-GERGPEEAP----------EGGAAAARGQRPRVPALEPPQ 706
P + L G G GE+GP+ P G GQ AL PP
Sbjct: 704 QQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 763
Query: 707 P--------PRGLR-----------KGAQEPGKRPTFSKVTSFRKGR------------- 734
P PRG++ KG + P F + R
Sbjct: 764 PQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDG 823
Query: 735 ---PLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVP 791
P P G P P+ + G G GLP GR P ++ +P F P
Sbjct: 824 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLP-----GYPGRQGPK----GSTGFPGF-P 873
Query: 792 QAAGDRTA-------GPAGA-GHTGTSGDLGSRGPSSE 821
A G++ A GP G G TG G G+RGP+ +
Sbjct: 874 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 911
Score = 42.7 bits (99), Expect = 0.002
Identities = 61/233 (26%), Positives = 80/233 (34%), Gaps = 60/233 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G QGP G P G P + G++ V + E G P
Sbjct: 1234 GPPGPRGPQGPNGADGPQG-----PPGSV-----GSVGGVGEKGEPGEAGNPG------- 1276
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
PPGE G + GE+G E P G A + P P + P+ G +
Sbjct: 1277 ----PPGEAGVGGPKGE-RGEKG-EAGPPGAAGPPGAKGP--PGDDGPKGNPGPVGFPGD 1328
Query: 718 PGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP-RENPPAAAGRDAP 776
PG P G P P + G G +G P + PP +G P
Sbjct: 1329 PG---------------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1367
Query: 777 PLHHGDASAWPEFVPQAAGDR-------TAGPAGA-GHTGTSGDLGSRGPSSE 821
P G P AAG G AGA G G +G +G +GP+ +
Sbjct: 1368 PGPPGKRGP-----PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Score = 41.6 bits (96), Expect = 0.005
Identities = 67/257 (26%), Positives = 88/257 (34%), Gaps = 66/257 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP E G GP G + P G GA R + G +A +E P
Sbjct: 1360 GPSGEAGPPGPPGKRGPPG-------------AAGAEGRQGEKGAKG-----EAGAEGPP 1401
Query: 658 STEEPPGERLRGESRSSG-SGERG-PEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGA 715
P G +G + G G RG P E G A GQ + PP P GL+
Sbjct: 1402 GKTGPVGP--QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP-GLKGDP 1458
Query: 716 QEPGKR----------PTFSKVTSFRKGRPLATESP-----GGVPAPTTEGRRWGSSGPE 760
G++ P + +G P SP GG+P P +GP
Sbjct: 1459 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGP---------AGPL 1509
Query: 761 GLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPS 819
G P PP G P + G + GPAG G +G G GS GP
Sbjct: 1510 GPP--GPPGLPGPQGPKGNKG----------------STGPAGQKGDSGLPGPPGSPGPP 1551
Query: 820 SESCNAKRLKTTEKKLR 836
E + +++K R
Sbjct: 1552 GEVIQPLPILSSKKTRR 1568
Score = 38.9 bits (89), Expect = 0.029
Identities = 70/264 (26%), Positives = 91/264 (34%), Gaps = 47/264 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAP-------IQGAGDGALQRVAQAAELGRVLVPQ 650
GP + G++GP G G + LP P + GDG+ A E + Q
Sbjct: 475 GPPGDPGDRGPPGRPGLPGAD-GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQ 533
Query: 651 AASEETPSTEEPPGERLR-----GESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPP 705
A P G R G S GE G + P+G Q P P +P
Sbjct: 534 QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG-DPGPQGPRGV---QGPPGPTGKPG 589
Query: 706 QPPRGLRKGAQ----EPGKRPT--FSKVTSFRKGRPLATE-SPGGVPAPT-TEGRRW--G 755
+ R G + EPG + F + + E P G P P +G R G
Sbjct: 590 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 649
Query: 756 SSGPEGLPRE----------------NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR-T 798
GP GLP E P AG D PP G+ P+ P G +
Sbjct: 650 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMG--PQGEPGPPGQQGN 707
Query: 799 AGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G G G G +GP +
Sbjct: 708 PGPQGLPGPQGPIGPPGEKGPQGK 731
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 57.4 bits (137), Expect = 8e-08
Identities = 67/233 (28%), Positives = 85/233 (36%), Gaps = 52/233 (22%)
Query: 594 VSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAAS 653
V GP E+G +GP G P G+ G + + +LG +P
Sbjct: 762 VGQIGPRGEDGPEGPKGRAGPTGD-------------PGPSGQAGEKGKLGVPGLPGYPG 808
Query: 654 EETP--STEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRG 710
+ P ST P GE + G +G+ GP RGQR P PRG
Sbjct: 809 RQGPKGSTGFPGFPGANGEKGARGVAGKPGP-----------RGQR-------GPTGPRG 850
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP-RENPPA 769
R GA+ P +P P T G P P E G GP G P + PP
Sbjct: 851 SR-GARGPTGKP-----------GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG 898
Query: 770 AAGRDAPPLH---HGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGP 818
G+D P H G+ + P G GP G G TG G+ G GP
Sbjct: 899 PPGKDGLPGHPGQRGETGFQGKTGPPGPGG-VVGPQGPTGETGPIGERGHPGP 950
Score = 52.8 bits (125), Expect = 2e-06
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 39/240 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP GE+G G P G LP P G E G PQ +
Sbjct: 1015 GPVGSPGERGSAGTAGPIG----LPGRPGPQGPPGPAGEKGAPGEKG----PQGPAGRD- 1065
Query: 658 STEEPPGERLRGESRSSGS-GERGPE-EAPEGGAAAARGQR-----PRVPALEPPQPPRG 710
+ P G L G + +GS GE G + E E G ++G + P P L+ P G
Sbjct: 1066 GVQGPVG--LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPG 1123
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--------GVPAPTTEGRRWGSSGPEGL 762
+ G EPG P + +KG A PG G+P P E G GP G
Sbjct: 1124 IAGGDGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGP 1181
Query: 763 PRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
P PP G P G PQ G G G G+ G+ GP E+
Sbjct: 1182 P--GPPGPRGPQGPNGADG---------PQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1230
Score = 51.2 bits (121), Expect = 6e-06
Identities = 68/235 (28%), Positives = 86/235 (36%), Gaps = 40/235 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEET- 656
GP G GP G P G + LP P Q G+ Q G V+ PQ + ET
Sbjct: 883 GPQGPVGFPGPKGPPGPPGKD-GLPGHPGQ-RGETGFQGKTGPPGPGGVVGPQGPTGETG 940
Query: 657 -------PSTEEPPGER-LRGESRSSGS-GERGPEE-APEGGAAAARGQRPRVPALEPPQ 706
P PPGE+ L G + G+ G+ GP+ + + G A RG P L Q
Sbjct: 941 PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF-PGERGLPGAQ 999
Query: 707 PPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPREN 766
GL+ G G PG V +P G G++GP GLP
Sbjct: 1000 GAPGLKGGEGPQGP--------------------PGPVGSPGERGSA-GTAGPIGLP--- 1035
Query: 767 PPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSE 821
G PP G+ A E PQ R G G +G GS G +
Sbjct: 1036 --GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGD 1088
Score = 47.4 bits (111), Expect = 8e-05
Identities = 72/237 (30%), Positives = 87/237 (36%), Gaps = 45/237 (18%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G GP G + P G P GD GR +P A
Sbjct: 406 GPAGPAGIMGPPGLQGPTG--------PPGDPGD--------RGPPGRPGLPGA-----D 444
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
PPG L R G G +GP + + A A Q+ R+ AL P P GL
Sbjct: 445 GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARI-ALRGPPGPMGL---TGR 500
Query: 718 PGKRPTFSKVTSFRKGR-----PLATESPGGVPAPTTE-GRRW--GSSGPEGLPRENPPA 769
PG P +S KG P G P PT + G+R G+ G G+P E P
Sbjct: 501 PG--PVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE--PG 556
Query: 770 AAGR---DAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSES 822
A G D P GD E PQ GP G G G G++G RG E+
Sbjct: 557 AKGDRGFDGLPGLPGDKGHRGERGPQG----PPGPPGDDGMRGEDGEIGPRGLPGEA 609
Score = 44.3 bits (103), Expect = 7e-04
Identities = 72/278 (25%), Positives = 90/278 (32%), Gaps = 72/278 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP GE GP G P G P AP Q G +G PQ
Sbjct: 601 GPRGLPGEAGPRGLLGPRGT----PGAPGQPGMAGVDGPPGPKGNMG----PQGEPGPPG 652
Query: 658 STEEPPGERLRGESRSSGS-GERGPEEAP----------EGGAAAARGQRPRVPALEPPQ 706
P + L G G GE+GP+ P G GQ AL PP
Sbjct: 653 QQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 712
Query: 707 P--------PRGLR-----------KGAQEPGKRPTFSKVTSFRKGR------------- 734
P PRG++ KG + P F + R
Sbjct: 713 PQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDG 772
Query: 735 ---PLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVP 791
P P G P P+ + G G GLP GR P ++ +P F P
Sbjct: 773 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLP-----GYPGRQGPK----GSTGFPGF-P 822
Query: 792 QAAGDRTA-------GPAGA-GHTGTSGDLGSRGPSSE 821
A G++ A GP G G TG G G+RGP+ +
Sbjct: 823 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 860
Score = 42.7 bits (99), Expect = 0.002
Identities = 61/233 (26%), Positives = 80/233 (34%), Gaps = 60/233 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G QGP G P G P + G++ V + E G P
Sbjct: 1183 GPPGPRGPQGPNGADGPQG-----PPGSV-----GSVGGVGEKGEPGEAGNPG------- 1225
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
PPGE G + GE+G E P G A + P P + P+ G +
Sbjct: 1226 ----PPGEAGVGGPKGE-RGEKG-EAGPPGAAGPPGAKGP--PGDDGPKGNPGPVGFPGD 1277
Query: 718 PGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP-RENPPAAAGRDAP 776
PG P G P P + G G +G P + PP +G P
Sbjct: 1278 PG---------------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1316
Query: 777 PLHHGDASAWPEFVPQAAGDR-------TAGPAGA-GHTGTSGDLGSRGPSSE 821
P G P AAG G AGA G G +G +G +GP+ +
Sbjct: 1317 PGPPGKRGP-----PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Score = 41.6 bits (96), Expect = 0.005
Identities = 67/257 (26%), Positives = 88/257 (34%), Gaps = 66/257 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP E G GP G + P G GA R + G +A +E P
Sbjct: 1309 GPSGEAGPPGPPGKRGPPG-------------AAGAEGRQGEKGAKG-----EAGAEGPP 1350
Query: 658 STEEPPGERLRGESRSSG-SGERG-PEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGA 715
P G +G + G G RG P E G A GQ + PP P GL+
Sbjct: 1351 GKTGPVGP--QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP-GLKGDP 1407
Query: 716 QEPGKR----------PTFSKVTSFRKGRPLATESP-----GGVPAPTTEGRRWGSSGPE 760
G++ P + +G P SP GG+P P +GP
Sbjct: 1408 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGP---------AGPL 1458
Query: 761 GLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPS 819
G P PP G P + G + GPAG G +G G GS GP
Sbjct: 1459 GPP--GPPGLPGPQGPKGNKG----------------STGPAGQKGDSGLPGPPGSPGPP 1500
Query: 820 SESCNAKRLKTTEKKLR 836
E + +++K R
Sbjct: 1501 GEVIQPLPILSSKKTRR 1517
Score = 38.9 bits (89), Expect = 0.029
Identities = 70/264 (26%), Positives = 91/264 (34%), Gaps = 47/264 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAP-------IQGAGDGALQRVAQAAELGRVLVPQ 650
GP + G++GP G G + LP P + GDG+ A E + Q
Sbjct: 424 GPPGDPGDRGPPGRPGLPGAD-GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQ 482
Query: 651 AASEETPSTEEPPGERLR-----GESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPP 705
A P G R G S GE G + P+G Q P P +P
Sbjct: 483 QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG-DPGPQGPRGV---QGPPGPTGKPG 538
Query: 706 QPPRGLRKGAQ----EPGKRPT--FSKVTSFRKGRPLATE-SPGGVPAPT-TEGRRW--G 755
+ R G + EPG + F + + E P G P P +G R G
Sbjct: 539 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 598
Query: 756 SSGPEGLPRE----------------NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR-T 798
GP GLP E P AG D PP G+ P+ P G +
Sbjct: 599 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMG--PQGEPGPPGQQGN 656
Query: 799 AGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G G G G +GP +
Sbjct: 657 PGPQGLPGPQGPIGPPGEKGPQGK 680
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 57.4 bits (137), Expect = 8e-08
Identities = 67/233 (28%), Positives = 85/233 (36%), Gaps = 52/233 (22%)
Query: 594 VSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAAS 653
V GP E+G +GP G P G+ G + + +LG +P
Sbjct: 801 VGQIGPRGEDGPEGPKGRAGPTGD-------------PGPSGQAGEKGKLGVPGLPGYPG 847
Query: 654 EETP--STEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRG 710
+ P ST P GE + G +G+ GP RGQR P PRG
Sbjct: 848 RQGPKGSTGFPGFPGANGEKGARGVAGKPGP-----------RGQR-------GPTGPRG 889
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP-RENPPA 769
R GA+ P +P P T G P P E G GP G P + PP
Sbjct: 890 SR-GARGPTGKP-----------GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG 937
Query: 770 AAGRDAPPLH---HGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGP 818
G+D P H G+ + P G GP G G TG G+ G GP
Sbjct: 938 PPGKDGLPGHPGQRGETGFQGKTGPPGPGG-VVGPQGPTGETGPIGERGHPGP 989
Score = 52.8 bits (125), Expect = 2e-06
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 39/240 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP GE+G G P G LP P G E G PQ +
Sbjct: 1054 GPVGSPGERGSAGTAGPIG----LPGRPGPQGPPGPAGEKGAPGEKG----PQGPAGRD- 1104
Query: 658 STEEPPGERLRGESRSSGS-GERGPE-EAPEGGAAAARGQR-----PRVPALEPPQPPRG 710
+ P G L G + +GS GE G + E E G ++G + P P L+ P G
Sbjct: 1105 GVQGPVG--LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPG 1162
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--------GVPAPTTEGRRWGSSGPEGL 762
+ G EPG P + +KG A PG G+P P E G GP G
Sbjct: 1163 IAGGDGEPG--PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGP 1220
Query: 763 PRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
P PP G P G PQ G G G G+ G+ GP E+
Sbjct: 1221 P--GPPGPRGPQGPNGADG---------PQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1269
Score = 51.2 bits (121), Expect = 6e-06
Identities = 68/235 (28%), Positives = 86/235 (36%), Gaps = 40/235 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEET- 656
GP G GP G P G + LP P Q G+ Q G V+ PQ + ET
Sbjct: 922 GPQGPVGFPGPKGPPGPPGKD-GLPGHPGQ-RGETGFQGKTGPPGPGGVVGPQGPTGETG 979
Query: 657 -------PSTEEPPGER-LRGESRSSGS-GERGPEE-APEGGAAAARGQRPRVPALEPPQ 706
P PPGE+ L G + G+ G+ GP+ + + G A RG P L Q
Sbjct: 980 PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGF-PGERGLPGAQ 1038
Query: 707 PPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPREN 766
GL+ G G PG V +P G G++GP GLP
Sbjct: 1039 GAPGLKGGEGPQGP--------------------PGPVGSPGERGSA-GTAGPIGLP--- 1074
Query: 767 PPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSE 821
G PP G+ A E PQ R G G +G GS G +
Sbjct: 1075 --GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGD 1127
Score = 47.4 bits (111), Expect = 8e-05
Identities = 72/237 (30%), Positives = 87/237 (36%), Gaps = 45/237 (18%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G GP G + P G P GD GR +P A
Sbjct: 445 GPAGPAGIMGPPGLQGPTG--------PPGDPGD--------RGPPGRPGLPGA-----D 483
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
PPG L R G G +GP + + A A Q+ R+ AL P P GL
Sbjct: 484 GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARI-ALRGPPGPMGL---TGR 539
Query: 718 PGKRPTFSKVTSFRKGR-----PLATESPGGVPAPTTE-GRRW--GSSGPEGLPRENPPA 769
PG P +S KG P G P PT + G+R G+ G G+P E P
Sbjct: 540 PG--PVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE--PG 595
Query: 770 AAGR---DAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSES 822
A G D P GD E PQ GP G G G G++G RG E+
Sbjct: 596 AKGDRGFDGLPGLPGDKGHRGERGPQG----PPGPPGDDGMRGEDGEIGPRGLPGEA 648
Score = 44.3 bits (103), Expect = 7e-04
Identities = 72/278 (25%), Positives = 90/278 (32%), Gaps = 72/278 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP GE GP G P G P AP Q G +G PQ
Sbjct: 640 GPRGLPGEAGPRGLLGPRGT----PGAPGQPGMAGVDGPPGPKGNMG----PQGEPGPPG 691
Query: 658 STEEPPGERLRGESRSSGS-GERGPEEAP----------EGGAAAARGQRPRVPALEPPQ 706
P + L G G GE+GP+ P G GQ AL PP
Sbjct: 692 QQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 751
Query: 707 P--------PRGLR-----------KGAQEPGKRPTFSKVTSFRKGR------------- 734
P PRG++ KG + P F + R
Sbjct: 752 PQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDG 811
Query: 735 ---PLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVP 791
P P G P P+ + G G GLP GR P ++ +P F P
Sbjct: 812 PEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLP-----GYPGRQGPK----GSTGFPGF-P 861
Query: 792 QAAGDRTA-------GPAGA-GHTGTSGDLGSRGPSSE 821
A G++ A GP G G TG G G+RGP+ +
Sbjct: 862 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 899
Score = 42.7 bits (99), Expect = 0.002
Identities = 61/233 (26%), Positives = 80/233 (34%), Gaps = 60/233 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G QGP G P G P + G++ V + E G P
Sbjct: 1222 GPPGPRGPQGPNGADGPQG-----PPGSV-----GSVGGVGEKGEPGEAGNPG------- 1264
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
PPGE G + GE+G E P G A + P P + P+ G +
Sbjct: 1265 ----PPGEAGVGGPKGE-RGEKG-EAGPPGAAGPPGAKGP--PGDDGPKGNPGPVGFPGD 1316
Query: 718 PGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP-RENPPAAAGRDAP 776
PG P G P P + G G +G P + PP +G P
Sbjct: 1317 PG---------------------PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1355
Query: 777 PLHHGDASAWPEFVPQAAGDR-------TAGPAGA-GHTGTSGDLGSRGPSSE 821
P G P AAG G AGA G G +G +G +GP+ +
Sbjct: 1356 PGPPGKRGP-----PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Score = 41.6 bits (96), Expect = 0.005
Identities = 67/257 (26%), Positives = 88/257 (34%), Gaps = 66/257 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP E G GP G + P G GA R + G +A +E P
Sbjct: 1348 GPSGEAGPPGPPGKRGPPG-------------AAGAEGRQGEKGAKG-----EAGAEGPP 1389
Query: 658 STEEPPGERLRGESRSSG-SGERG-PEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGA 715
P G +G + G G RG P E G A GQ + PP P GL+
Sbjct: 1390 GKTGPVGP--QGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP-GLKGDP 1446
Query: 716 QEPGKR----------PTFSKVTSFRKGRPLATESP-----GGVPAPTTEGRRWGSSGPE 760
G++ P + +G P SP GG+P P +GP
Sbjct: 1447 GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGP---------AGPL 1497
Query: 761 GLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPS 819
G P PP G P + G + GPAG G +G G GS GP
Sbjct: 1498 GPP--GPPGLPGPQGPKGNKG----------------STGPAGQKGDSGLPGPPGSPGPP 1539
Query: 820 SESCNAKRLKTTEKKLR 836
E + +++K R
Sbjct: 1540 GEVIQPLPILSSKKTRR 1556
Score = 38.9 bits (89), Expect = 0.029
Identities = 70/264 (26%), Positives = 91/264 (34%), Gaps = 47/264 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAP-------IQGAGDGALQRVAQAAELGRVLVPQ 650
GP + G++GP G G + LP P + GDG+ A E + Q
Sbjct: 463 GPPGDPGDRGPPGRPGLPGAD-GLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQ 521
Query: 651 AASEETPSTEEPPGERLR-----GESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPP 705
A P G R G S GE G + P+G Q P P +P
Sbjct: 522 QARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG-DPGPQGPRGV---QGPPGPTGKPG 577
Query: 706 QPPRGLRKGAQ----EPGKRPT--FSKVTSFRKGRPLATE-SPGGVPAPT-TEGRRW--G 755
+ R G + EPG + F + + E P G P P +G R G
Sbjct: 578 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 637
Query: 756 SSGPEGLPRE----------------NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR-T 798
GP GLP E P AG D PP G+ P+ P G +
Sbjct: 638 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMG--PQGEPGPPGQQGN 695
Query: 799 AGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G G G G +GP +
Sbjct: 696 PGPQGLPGPQGPIGPPGEKGPQGK 719
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 56.6 bits (135), Expect = 1e-07
Identities = 88/366 (24%), Positives = 132/366 (36%), Gaps = 45/366 (12%)
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGSGER-GPEEAPEGGAAAARG 694
+V + +E V+V + +EET TEE E + G E G EE EGG +
Sbjct: 445 KVVEKSEKETVIVEEQ-TEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKS 503
Query: 695 QRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGR-PLATESPGGVPAPTTEGRR 753
PA E P + + +E K P +K + + P +SP +P E +
Sbjct: 504 P----PAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAK 559
Query: 754 WGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDL 813
S PE E A + + PE A + PA A +
Sbjct: 560 ---SPPEAKSPEKEEAKSPAEVKS---------PEKAKSPAKEEAKSPAEA-KSPEKAKS 606
Query: 814 GSRGPSSESCNAKRLKTTEKKLRARLALAHKTFSNFIESIVLEKENTHERSPSSPKGEKE 873
+ + AK E K A + K +S E+ + E++ S K E +
Sbjct: 607 PVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKA-----KSPTKEEAKSPEKAKSPEKEEAK 661
Query: 874 KSRLRQGSWRAFLKSKD-AGSP-----KKPTLVSLPLGPEVLSPAETDSHCEERAEDKE- 926
+ +A KS + A SP K P P+ E SP + S +E A+ E
Sbjct: 662 SPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEK 721
Query: 927 --GYVFSDHWAPPLASTPLSSSLVSPEHRRKSE---------PTIKCTATQEGGRYLPSG 975
V + P A +P+ SPE + E P K A +E P+
Sbjct: 722 AKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARS--PAD 779
Query: 976 IFPEKS 981
FPEK+
Sbjct: 780 KFPEKA 785
Score = 51.2 bits (121), Expect = 6e-06
Identities = 109/560 (19%), Positives = 204/560 (36%), Gaps = 69/560 (12%)
Query: 381 PAPTQLSGPIPAFQSGAPHLQGPCKPGGFRLQRASQDTPSAGLLGENQLRQDSRSCLVAS 440
P P L +P S + H++ + ++++ ++T ++ E Q + V
Sbjct: 417 PIPFSLPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKET----VIVEEQTEETQ----VTE 468
Query: 441 CLTSELVKLSAEEVPEPAECKSEQSPESRTQEPQGTQLAPRAADERETQKHLWGISVQAG 500
+T E K + EE + E E+ E +E + A+ E+E
Sbjct: 469 EVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKE------------- 515
Query: 501 NQTSNYTSKYVLSEESKSPTRAKFP-RQPSSEGTQVWSGDLMGCLEVSDSSDAPETTQKS 559
+K + EE+KSP AK P ++ + +V S + ++ PE KS
Sbjct: 516 -------AKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEA--KS 566
Query: 560 SAIDTSKAAEEAMVLDPIYREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNEC 619
+ +K+ E + + S +A + +E + P K+P E
Sbjct: 567 PEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEA 626
Query: 620 ELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGSGER 679
+ P A ++ +A + P+ ++P + P ++ E++S
Sbjct: 627 KSP-AEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSP---VKAEAKS------ 676
Query: 680 GPEEAPEGGAAAARG-QRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGR-PLA 737
PE+A A A+ ++ + P E + P + +E K P +K + + P
Sbjct: 677 -PEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEK 735
Query: 738 TESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR 797
+SP A + E + + L ++P A A A +PE +
Sbjct: 736 AKSPVKEEAKSPEKAK-SPEKAKTLDVKSPEAKT--PAKEEARSPADKFPEKAKSPVKEE 792
Query: 798 TAGPAGAGHTGTSGDLGSRGPSSESCNAKRLKTTEKKLRARLALAHKTFSNFIESIVLEK 857
P A + P E A K KK + + + ++ K
Sbjct: 793 VKSPEKA-----------KSPLKEDAKAPE-KEIPKKEEVKSPVKEEEKPQEVKVKEPPK 840
Query: 858 ENTHERSPSSPKGEKEKSRLRQGSWRAFLKSKDAGSPKKPTLVSLPLGPEVLSPAETDSH 917
+ E++P++PK E++K ++ + K+A PK V P V P E+
Sbjct: 841 KAEEEKAPATPKTEEKKDSKKEEA-----PKKEAPKPK----VEEKKEPAVEKPKESKVE 891
Query: 918 C-EERAEDKEGYVFSDHWAP 936
+E AEDK+ + AP
Sbjct: 892 AKKEEAEDKKKVPTPEKEAP 911
Score = 50.4 bits (119), Expect = 1e-05
Identities = 93/454 (20%), Positives = 152/454 (33%), Gaps = 72/454 (15%)
Query: 452 EEVPEPAECKSEQSPESRTQEPQGTQLAPRAADERETQKHLWGISVQAGNQTSNYTSKYV 511
EE PAE KS + +S T+E + ++ ++ E + S S +K
Sbjct: 624 EEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSP 683
Query: 512 LSEESKSPTRAKFPRQPSSEGTQVWSGDLMGCLEVSDSSDAPETTQKSSAIDTSKAAEEA 571
+ E+KSP +AK P + ++ + V + + +PE KS + +K E+A
Sbjct: 684 VKAEAKSPEKAKSPVKEEAKSPEKAKS------PVKEEAKSPEKA-KSPVKEEAKTPEKA 736
Query: 572 MVLDPIYRE--QALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGA 629
P+ E + S KA T+ P A KTPA E PA
Sbjct: 737 K--SPVKEEAKSPEKAKSPEKAKTLDVKSPEA----------KTPAKEEARSPADKFPEK 784
Query: 630 GDGALQRVAQAAELGRVLVPQ---AASEETPSTEEPPGERLRGESRSSGSGERGPEEAPE 686
++ ++ E + + + A +E P EE E + P++A E
Sbjct: 785 AKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEE 844
Query: 687 GGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFR-KGRPLATESPGGVP 745
A A + + + P + K E K P K + + + E VP
Sbjct: 845 EKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVP 904
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAG 805
P E + P+E A + A A
Sbjct: 905 TPEKEAPAKVEVKEDAKPKEKTEVA-------------------------KKEPDDAKAK 939
Query: 806 HTGTSGDLGSRGPSSESCNAKRLKTTEKKLRARLALAHKTFSNFIESIVLEKENTHERSP 865
+ P + ++ K E+K + E+ E + T + P
Sbjct: 940 EPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKT-------------EAKAKEDDKTLSKEP 986
Query: 866 SSPKGEK-EKSRLRQGSWRAFLKSKDAGSPKKPT 898
S PK EK EKS + KD+ P+K T
Sbjct: 987 SKPKAEKAEKS--------SSTDQKDSKPPEKAT 1012
Score = 46.2 bits (108), Expect = 2e-04
Identities = 98/479 (20%), Positives = 167/479 (34%), Gaps = 58/479 (12%)
Query: 452 EEVPEPAECKSEQSPESRTQEPQGTQLAPRAADERETQKHLWGISVQAGNQTSNYTSKYV 511
EE PAE KS + +S +E + ++ + E + S +K
Sbjct: 590 EEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKS--------PAEVKSPEKAKSP 641
Query: 512 LSEESKSPTRAKFPRQPSSEGTQVWSGDLMGCLEVSDSSDAP-ETTQKSSAIDTSKAAEE 570
EE+KSP +AK P + ++ + + + + + +P + KS S EE
Sbjct: 642 TKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEE 701
Query: 571 AMVLDPIYREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAG 630
A E+A + E + P EE + P K+P E + P
Sbjct: 702 AK-----SPEKAKSPVKEEAKSPEKAKSPVKEEAKT-PEKAKSPVKEEAKSP-------- 747
Query: 631 DGALQRVAQAAELGRVLVPQAASEETPSTEE--PPGERLRGESRSSGSGE-RGPEEAPEG 687
A++ E + L ++ +TP+ EE P ++ +++S E + PE+A
Sbjct: 748 -----EKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSP 802
Query: 688 GAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAP 747
A+ +P E + P + ++P KV K P E P
Sbjct: 803 LKEDAKAPEKEIPKKEEVKSP-------VKEEEKPQEVKV----KEPPKKAEEEKAPATP 851
Query: 748 TTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHT 807
TE ++ S E +E P P + E + A D+ P
Sbjct: 852 KTEEKK-DSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEA 910
Query: 808 GTSGDLGSRGPSSESCNAKRLKTTEKKLRARLALAHKTFSNFIESIVLEKENTHERSPSS 867
++ E + + + K + A K + EK++T E
Sbjct: 911 PAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEK------KEAAPEKKDTKEEKAKK 964
Query: 868 PKGEKEKSRLRQGSWRAFLKSKDAGSPKKPTLVSLPLGPEVLSPAETDSHCEERA-EDK 925
P+ EK K+ A K D K+P+ + S + DS E+A EDK
Sbjct: 965 PE-EKPKT-------EAKAKEDDKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKATEDK 1015
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 56.2 bits (134), Expect = 2e-07
Identities = 65/246 (26%), Positives = 82/246 (33%), Gaps = 53/246 (21%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQG-----AGDGALQRVAQAAELGRVLVPQAA 652
GP G QGP G P+G + E QG +G +G +P
Sbjct: 1177 GPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPP 1236
Query: 653 SEETPSTEE-------PPGERLRGESRSSGSGERGPEEAPEG----GAAAARGQ-----R 696
E+ + + PPG R S G GP+ P G GA +G+
Sbjct: 1237 GEKGETGDVGQMGPPGPPGPR----GPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGE 1292
Query: 697 PRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGS 756
P +P P P+G R E G P P G P + GS
Sbjct: 1293 PGLPGEGGPPGPKGERGEKGESG---------------PSGAAGPPGPKGPPGDDGPKGS 1337
Query: 757 SGPEGLPRE----NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGD 812
GP G P + P AG+D PP GD +T P G G SG
Sbjct: 1338 PGPVGFPGDPGPPGEPGPAGQDGPPGDKGD---------DGEPGQTGSPGPTGEPGPSGP 1388
Query: 813 LGSRGP 818
G RGP
Sbjct: 1389 PGKRGP 1394
Score = 46.6 bits (109), Expect = 1e-04
Identities = 65/246 (26%), Positives = 85/246 (34%), Gaps = 50/246 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAG-----------NECELPAAPIQGAGDGALQRVAQAAELGRV 646
GP GE+GP G + P G + LP P Q G + G V
Sbjct: 940 GPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPG-V 998
Query: 647 LVPQAASEET--------PSTEEPPGER-LRGESRSSGS-GERGPEEAP-EGGAAAARGQ 695
+ PQ + ET P PPGE+ L G + G+ G+ GP P + G RG
Sbjct: 999 VGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGF 1058
Query: 696 RPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWG 755
P L P GL+ PG PG +P G G
Sbjct: 1059 -PGDRGLPGPVGALGLKGNEGPPGP--------------------PGPAGSPGERGPA-G 1096
Query: 756 SSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGS 815
++GP G+P G PP G+ A E PQ R G G +G +G
Sbjct: 1097 AAGPIGIP-----GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGP 1151
Query: 816 RGPSSE 821
G +
Sbjct: 1152 PGEDGD 1157
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/255 (27%), Positives = 89/255 (34%), Gaps = 64/255 (25%)
Query: 598 GPGAEEGE-------------QGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELG 644
GP E+G+ +GP G + PAG LP P G + + G
Sbjct: 447 GPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAG----LPGPPGTMGPTGQVGDPGERGPPG 502
Query: 645 RVLVPQAASEETPSTEEPPGERLRGESRSSGSGE---RGPEEAPEGGAAAARGQRPRVPA 701
R +P A PPG L R G G+ +GP + + A A Q+ R+ A
Sbjct: 503 RPGLPGA-----DGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARL-A 556
Query: 702 LEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRP--LATESPGGVPAPT----TEGRRW- 754
L P P GL PG P + KG P + + P GV P GRR
Sbjct: 557 LRGPAGPMGL---TGRPG--PVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGR 611
Query: 755 -GSSGPEGLPRENPPAA-------AGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGH 806
GS G G+P + P AG H GD P +G
Sbjct: 612 AGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGD------------------PGPSGP 653
Query: 807 TGTSGDLGSRGPSSE 821
G GD G RG E
Sbjct: 654 PGPPGDDGERGDDGE 668
Score = 46.2 bits (108), Expect = 2e-04
Identities = 73/263 (27%), Positives = 89/263 (33%), Gaps = 48/263 (18%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECEL-PAAPIQGAGD-GALQRVAQAAELGR------VLVP 649
GP GE+GP G P G P P AG+ GA GR V +P
Sbjct: 1084 GPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLP 1143
Query: 650 QAASEETPSTE--------EPPGERLRGESRSSG----SGERGP--EEAPEG--GAAAAR 693
A P E EP + +G+ G +G +GP + P G G R
Sbjct: 1144 GPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPR 1203
Query: 694 GQR----------PRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGG 743
GQ+ PR P P GL+ PG++ V P P G
Sbjct: 1204 GQQGLFGQKGDEGPR--GFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSG 1261
Query: 744 VP------APTTEGRRWGSSGPEGLPRE-NPPAAAGRDAPPLHHGDASAWPEFVPQAAGD 796
P P G+ G +G P E P G PP G+ E P A
Sbjct: 1262 APGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGA-- 1319
Query: 797 RTAGPAG-AGHTGTSGDLGSRGP 818
AGP G G G G GS GP
Sbjct: 1320 --AGPPGPKGPPGDDGPKGSPGP 1340
Score = 45.8 bits (107), Expect = 2e-04
Identities = 74/269 (27%), Positives = 89/269 (33%), Gaps = 65/269 (24%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELP-----------AAPIQGAGDGALQRVAQAAELG-R 645
GP G G G P G LP P+ A + Q + Q A L R
Sbjct: 499 GPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALR 558
Query: 646 VLVPQAASEETPSTEEPPGER-LRGESRSSG-SGERGPEEAPEGGAAAARGQRPR----- 698
P PPG L+GE G G RG + P G A G+R R
Sbjct: 559 GPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPP--GPAGKPGRRGRAGSDG 616
Query: 699 ---VPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPT-TEGRRW 754
+P P+ RG A PG++ +G P P G P P +G R
Sbjct: 617 ARGMPGQTGPKGDRGFDGLAGLPGEKG--------HRGDP----GPSGPPGPPGDDGERG 664
Query: 755 --GSSGPEGLPRE----------------NPPAAAGRDAPPLHHGDASAWPEFVPQAAGD 796
G GP GLP E PP G D P G+ P+ P G
Sbjct: 665 DDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVG--PQGEPGPPGQ 722
Query: 797 R-------TAGPAGA-GHTGTSGDLGSRG 817
+ GP GA G G G LG G
Sbjct: 723 QGNPGAQGLPGPQGAIGPPGEKGPLGKPG 751
Score = 43.9 bits (102), Expect = 0.001
Identities = 57/227 (25%), Positives = 71/227 (31%), Gaps = 40/227 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGD-GALQRVAQAAELGRVLVPQAASEET 656
GP +G QGP G PAG P P GD G + Q G E+
Sbjct: 1129 GPAGRDGLQGPVGLPGPAG-----PVGPPGEDGDKGEIGEPGQKGSKGD------KGEQG 1177
Query: 657 PSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQ 716
P P + S GE GP +G + PR P P GL+
Sbjct: 1178 PPGPTGPQGPIGQPGPSGADGEPGPR-GQQGLFGQKGDEGPR--GFPGPPGPVGLQGLPG 1234
Query: 717 EPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-NPPAAAGRDA 775
PG++ V P P G P G+ GP+G P P A G
Sbjct: 1235 PPGEKGETGDVGQMGPPGPPGPRGPSGAP---------GADGPQGPPGGIGNPGAVGEKG 1285
Query: 776 PPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
P G+ P G G G+ G +G S S
Sbjct: 1286 EPGEAGEPGL---------------PGEGGPPGPKGERGEKGESGPS 1317
Score = 43.1 bits (100), Expect = 0.002
Identities = 66/257 (25%), Positives = 81/257 (31%), Gaps = 45/257 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP E+G QGP G + P G P DG E G P +
Sbjct: 769 GPPGEKGGQGPPGPQGPIG----YPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGI 824
Query: 658 STEE----PPGERLRGESRSSGSGERGPEEAPEG--GAAAARGQR--PRVPALEPPQPPR 709
+ PPG RGE G RG G G +G+ P +P Q P+
Sbjct: 825 KGDRGEIGPPGP--RGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPK 882
Query: 710 GL-----------RKGAQ----EPGKR----PTFSKVTSFRKG-----RPLATESPGGVP 745
G KG + +PG R PT + +G P G
Sbjct: 883 GSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPA 942
Query: 746 APTTEGRRWGSSGPEGLP-RENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGA 804
P E G GP G P + PP G+D P H G +T P
Sbjct: 943 GPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRG------ETGFQGKTGPPGPP 996
Query: 805 GHTGTSGDLGSRGPSSE 821
G G G G GP E
Sbjct: 997 GVVGPQGPTGETGPMGE 1013
Score = 39.3 bits (90), Expect = 0.022
Identities = 55/200 (27%), Positives = 67/200 (33%), Gaps = 34/200 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGD-GALQRVAQAAELGRV--LVPQAASE 654
GP E G GP G + P G PA P G+ GA G+ + PQ A
Sbjct: 1378 GPTGEPGPSGPPGKRGPPG-----PAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGA-- 1430
Query: 655 ETPSTEEPPGER----LRGESRSSGS-------GERGPEEAP----EGGAAAARGQRPRV 699
P P G R GE GS G GP P + G +G +
Sbjct: 1431 --PGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLI 1488
Query: 700 PALEPP--QPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSS 757
+ PP Q +G R G + P+ P G+P P GSS
Sbjct: 1489 GLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSS 1548
Query: 758 GPEGLPRENPPAAAGRDAPP 777
GP G P AG PP
Sbjct: 1549 GPTG-----PKGEAGHPGPP 1563
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 55.1 bits (131), Expect = 4e-07
Identities = 75/243 (30%), Positives = 90/243 (37%), Gaps = 50/243 (20%)
Query: 585 GLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELG 644
G++ F A GP G GP G PAG E QG V + E+G
Sbjct: 784 GMTGFPGAA-GRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGP-------VGRTGEVG 835
Query: 645 RVLVPQAASEETPSTEE----PPGERLRGESRSSGSGERGPEEAPEG-GAAAARGQR--P 697
V P A E+ PS E PPG G +G AP G +RG+R P
Sbjct: 836 AVGPPGFAGEKGPSGEAGTAGPPGT----------PGPQGLLGAPGILGLPGSRGERGLP 885
Query: 698 RVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSS 757
V P G+ A PG R G P A SPG AP GR G+
Sbjct: 886 GVAGAVGEPGPLGI---AGPPGAR-----------GPPGAVGSPGVNGAPGEAGRD-GNP 930
Query: 758 GPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSR 816
G +G P GRD P H G+ +P + GP G G G G+ G
Sbjct: 931 GNDGPP--------GRDGQPGHKGE-RGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGET 981
Query: 817 GPS 819
GPS
Sbjct: 982 GPS 984
Score = 52.8 bits (125), Expect = 2e-06
Identities = 70/245 (28%), Positives = 86/245 (35%), Gaps = 34/245 (13%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLV--------P 649
GP +GE GP G P G P P G+ A Q + LG + P
Sbjct: 48 GPPGRDGEDGPTGPPGPPG-----PPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPP 102
Query: 650 QAASEETPSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPR 709
AA P + P ++ +G RGP P +P P P+
Sbjct: 103 GAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQ 162
Query: 710 GLRKGAQEPGKRPTFSKVTSFR-----KGRPLATESPGGVPAPTTEGRRWGSSGPEGLPR 764
G R PG P F + KG+P A G AP G G +G GLP
Sbjct: 163 GARGFPGTPG-LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTP-GQTGARGLPG 220
Query: 765 E-------NPPAAAGRDAPPLHHGDA----SAWPEFVPQAAGDRTAGPAGA-GHTGTSGD 812
E P A G D G A SA P P A G + G GA G+ G +G
Sbjct: 221 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPK--GEIGAVGNAGPAGP 278
Query: 813 LGSRG 817
G RG
Sbjct: 279 AGPRG 283
Score = 50.1 bits (118), Expect = 1e-05
Identities = 64/245 (26%), Positives = 83/245 (33%), Gaps = 28/245 (11%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP EEG++GP G AG P P G+ G + P + P
Sbjct: 373 GPSGEEGKRGPNGEAGSAGP----PGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGP 428
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
+ P G RG +P A + +P ++ P G E
Sbjct: 429 AGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGE 488
Query: 718 PG-------KRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP----REN 766
PG K PT + KG G P P G GP+G+ +
Sbjct: 489 PGNIGFPGPKGPTGDPGKNGDKGH-AGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQG 547
Query: 767 PPAAAGRDAPPLHHGDA---------SAWPEF-VPQAAGDR-TAGPAG-AGHTGTSGDLG 814
PP G P G A EF +P AG R GP G +G G +G +G
Sbjct: 548 PPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIG 607
Query: 815 SRGPS 819
SRGPS
Sbjct: 608 SRGPS 612
Score = 49.7 bits (117), Expect = 2e-05
Identities = 70/260 (26%), Positives = 82/260 (31%), Gaps = 63/260 (24%)
Query: 598 GPGAEEGEQGPGGGKTPAG-----NECELPAAPIQGAGDGALQRVAQAAELGRVLVP--- 649
GP E G GP G P G LP + + G V + LG P
Sbjct: 847 GPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGAR 906
Query: 650 ----------------QAASEETPSTEEPPGERLRGESRSSGSGERG-PEEAPEGGAAAA 692
+A + P + PPG + + GERG P GAA A
Sbjct: 907 GPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGR----DGQPGHKGERGYPGNIGPVGAAGA 962
Query: 693 RGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGR 752
P P P G E G + P P G+ E
Sbjct: 963 -------PGPHGPVGPAGKHGNRGETGPSGPVGPAGAVG---PRGPSGPQGIRGDKGEP- 1011
Query: 753 RWGSSGPEGLPR-------ENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-- 803
G GP GLP + P AG HHGD A P V A AGP+G
Sbjct: 1012 --GEKGPRGLPGLKGHNGLQGLPGIAG------HHGDQGA-PGSVGPAGPRGPAGPSGPA 1062
Query: 804 -----AGHTGTSGDLGSRGP 818
GH GT G G RGP
Sbjct: 1063 GKDGRTGHPGTVGPAGIRGP 1082
Score = 47.4 bits (111), Expect = 8e-05
Identities = 76/245 (31%), Positives = 97/245 (39%), Gaps = 34/245 (13%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G E G+ GP G + PAG P + DG + + E G V+ PQ A P
Sbjct: 118 GEPGEPGQTGPAGARGPAG-------PPGKAGEDGHPGKPGRPGERG-VVGPQGA-RGFP 168
Query: 658 STEEPPG-ERLRGESRSSG-SGERG-PEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKG 714
T PG + +RG + G G+ G P E GA G + A P RG R G
Sbjct: 169 GTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLP-GERG-RVG 226
Query: 715 AQEP-GKRPTFSKVTSFRKGRPLATESPGGVP-APTTEGR-----RWGSSGPEGLPRE-N 766
A P G R + V P+ + P G P AP +G G +GP G E
Sbjct: 227 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVG 286
Query: 767 PPAAAGRDAPPLHHG--------DASAWPEF--VPQAAGDR-TAGPAG-AGHTGTSGDLG 814
P +G PP + G A+ P P G R GP G AG TG G +G
Sbjct: 287 LPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVG 346
Query: 815 SRGPS 819
GP+
Sbjct: 347 EPGPA 351
Score = 44.7 bits (104), Expect = 5e-04
Identities = 47/175 (26%), Positives = 56/175 (32%), Gaps = 22/175 (12%)
Query: 662 PPGERLRGESRSSGSGERGPEEAP-------------EGGAAAARGQRPRVPALEPPQPP 708
PPG + G GE+GP P E G RG L P P
Sbjct: 533 PPGP----QGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEF-GLPGPAGP 587
Query: 709 RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENP- 767
RG R E G + S P + G P G SGP GLP E
Sbjct: 588 RGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGA 647
Query: 768 ---PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPS 819
P G P G+ + A P AG TG G+ G+ GP+
Sbjct: 648 AGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPA 702
Score = 37.7 bits (86), Expect = 0.065
Identities = 63/234 (26%), Positives = 74/234 (31%), Gaps = 39/234 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECEL--PAAP-IQG--AGDGALQRVAQAAELGRVLVPQAA 652
GP G QGP G + G + E P P QG G V + E G
Sbjct: 523 GPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGL-----HG 577
Query: 653 SEETPSTEEPPGER-LRGESRSSGS----GERGPEEAPEGGAAAARGQRPRVPALEP--P 705
P P GER GES ++G G RGP P G +G+ V A+ P
Sbjct: 578 EFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPP--GPDGNKGEPGVVGAVGTAGP 635
Query: 706 QPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE 765
P GL PG+R A PGG G R P
Sbjct: 636 SGPSGL------PGERG--------------AAGIPGGKGEKGEPGLRGEIGNPGRDGAR 675
Query: 766 NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPS 819
P A G P GD P P G G +G G GP+
Sbjct: 676 GAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPA 729
Score = 31.6 bits (70), Expect = 4.7
Identities = 45/146 (30%), Positives = 50/146 (34%), Gaps = 36/146 (24%)
Query: 682 EEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESP 741
EE G A RG R PP PP R G P P G P P
Sbjct: 27 EETVRKGPAGDRGPRGE---RGPPGPPG--RDGEDGPTGPP----------GPPGPPGPP 71
Query: 742 G--GVPAPTTEGRRWG-SSGPEGL--PRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGD 796
G G A +G+ G GP GL PR PP AAG P G A
Sbjct: 72 GLGGNFAAQYDGKGVGLGPGPMGLMGPR-GPPGAAGAPGPQGFQGPAGE----------- 119
Query: 797 RTAGPAGAGHTGTSGDLGSRGPSSES 822
P G TG +G G GP ++
Sbjct: 120 ----PGEPGQTGPAGARGPAGPPGKA 141
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 55.1 bits (131), Expect = 4e-07
Identities = 121/477 (25%), Positives = 162/477 (33%), Gaps = 100/477 (20%)
Query: 660 EEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQP--PRGLRK---G 714
EE + E G GE G E G A A G P++E P P LR G
Sbjct: 89 EEDDEDEEEEEEEEEGDGE-GQEGGDPGSEAPAPGPLIPSPSVEEPHKHRPTTLRLTTLG 147
Query: 715 AQEPGK--------RPTFSKVTSFRKGRPLAT-ESPGGVPAPTTEGRRWGSSGPEGLPRE 765
AQ+ RP + T+ P A E PG +PA T G G + R
Sbjct: 148 AQDSLNNNGGFDLVRPASWQETALCSPAPEALRELPGPLPATDT-----GPGGAQSPVRP 202
Query: 766 NPPAAAGRDAPPLHHGDASAWPEFVPQAAGD-RTAGPAGAGHTGTSGDLGSRGPSSESCN 824
R A P G S P P D R+ G G +S +L S G SE
Sbjct: 203 GCDCEGNRPAEPPAPGGTS--PSSDPGIEADLRSRSSGGRGGRRSSQELSSPGSDSEDAG 260
Query: 825 AKRL-------KTTEKKLRARLALAHKTFSNFIESIVLEKENTHERSPSSPKGEKEKSRL 877
RL TE +L + + S+ + + + E SSP E E R
Sbjct: 261 GARLGRMISSISETELELSSDGGSSSSGRSSHLTNSIEEA--------SSPASEPEPPR- 311
Query: 878 RQGSWRAFLKSKDAGSPKKPTLVSLPLGPEVLSPAETDSHCEERAEDKEGYVFSDHWAPP 937
P++P LP+GP+ +T+S E +E + +
Sbjct: 312 --------------EPPRRPAF--LPVGPD-----DTNSEYESGSESEPDL------SED 344
Query: 938 LASTPLSSSLVSPEHRRKSEPTIKCTATQEGGRYLPSGIFPEKSWLASPGSPRAQQAGIA 997
S L S+LVS S P I+C G+ L P PG P + G A
Sbjct: 345 ADSPWLLSNLVSRMISEGSSP-IRCP-----GQCLSPAPRP-------PGEPVSPAGGAA 391
Query: 998 HTLPSSSACCLAYENPG--------TPCRPTSPKPLSPRPSAQRMGLHYPGRGSAISMVS 1049
A PG T C P P P +PRP P + +S
Sbjct: 392 QDSQDPEAAA----GPGGVELVDMETLCAPPPPAPAAPRPG--------PAQPGPCLFLS 439
Query: 1050 LGSYSYVDSSSGDPERPKIPKGQTSFLLSLQTLNQDEQKEESREGGQG-PRGLGTVP 1105
+ + P R P S S + +D+++EE E G P G GT P
Sbjct: 440 NPTRDTITPLWAAPGRAARPGRACSAACSEEEDEEDDEEEEDAEDSAGSPGGRGTGP 496
Score = 40.8 bits (94), Expect = 0.008
Identities = 77/353 (21%), Positives = 121/353 (34%), Gaps = 58/353 (16%)
Query: 380 SPAPT---QLSGPIPAFQSGAPHLQGPCKPGGFRLQRASQDTPSAGLLGENQLRQDSRSC 436
SPAP +L GP+PA +G Q P +PG + P+ G S
Sbjct: 173 SPAPEALRELPGPLPATDTGPGGAQSPVRPGCDCEGNRPAEPPAPG----------GTSP 222
Query: 437 LVASCLTSELVKLSAEEVPEPAECKSEQSPESRTQEPQGTQLAPRAADERETQKHLWGIS 496
+ ++L S+ + SP S +++ G +L + ET+ L S
Sbjct: 223 SSDPGIEADLRSRSSGGRGGRRSSQELSSPGSDSEDAGGARLGRMISSISETELEL---S 279
Query: 497 VQAGNQTSNYTSKYVLS-EESKSP-TRAKFPRQPSSEGTQVWSGDLMGCLEVSDSSDAPE 554
G+ +S +S S EE+ SP + + PR+P + G D +++
Sbjct: 280 SDGGSSSSGRSSHLTNSIEEASSPASEPEPPREPPRRPAFLPVG--------PDDTNSEY 331
Query: 555 TTQKSSAIDTSKAAEEAMVLDPIYREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTP 614
+ S D S+ A+ +L + +G S + G + PG +P
Sbjct: 332 ESGSESEPDLSEDADSPWLLSNLVSRMISEGSSPIRCP-----GQCLSPAPRPPGEPVSP 386
Query: 615 AGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTEEP------------ 662
AG + P AG G ++ V AA P+ P
Sbjct: 387 AGGAAQDSQDPEAAAGPGGVELVDMETLCAPPPPAPAAPRPGPAQPGPCLFLSNPTRDTI 446
Query: 663 ------PGERLR-GESRSSGSGERGPEEAPE--------GGAAAARGQRPRVP 700
PG R G + S+ E EE E G+ RG P P
Sbjct: 447 TPLWAAPGRAARPGRACSAACSEEEDEEDDEEEEDAEDSAGSPGGRGTGPSAP 499
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 55.1 bits (131), Expect = 4e-07
Identities = 121/477 (25%), Positives = 162/477 (33%), Gaps = 100/477 (20%)
Query: 660 EEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQP--PRGLRK---G 714
EE + E G GE G E G A A G P++E P P LR G
Sbjct: 62 EEDDEDEEEEEEEEEGDGE-GQEGGDPGSEAPAPGPLIPSPSVEEPHKHRPTTLRLTTLG 120
Query: 715 AQEPGK--------RPTFSKVTSFRKGRPLAT-ESPGGVPAPTTEGRRWGSSGPEGLPRE 765
AQ+ RP + T+ P A E PG +PA T G G + R
Sbjct: 121 AQDSLNNNGGFDLVRPASWQETALCSPAPEALRELPGPLPATDT-----GPGGAQSPVRP 175
Query: 766 NPPAAAGRDAPPLHHGDASAWPEFVPQAAGD-RTAGPAGAGHTGTSGDLGSRGPSSESCN 824
R A P G S P P D R+ G G +S +L S G SE
Sbjct: 176 GCDCEGNRPAEPPAPGGTS--PSSDPGIEADLRSRSSGGRGGRRSSQELSSPGSDSEDAG 233
Query: 825 AKRL-------KTTEKKLRARLALAHKTFSNFIESIVLEKENTHERSPSSPKGEKEKSRL 877
RL TE +L + + S+ + + + E SSP E E R
Sbjct: 234 GARLGRMISSISETELELSSDGGSSSSGRSSHLTNSIEEA--------SSPASEPEPPR- 284
Query: 878 RQGSWRAFLKSKDAGSPKKPTLVSLPLGPEVLSPAETDSHCEERAEDKEGYVFSDHWAPP 937
P++P LP+GP+ +T+S E +E + +
Sbjct: 285 --------------EPPRRPAF--LPVGPD-----DTNSEYESGSESEPDL------SED 317
Query: 938 LASTPLSSSLVSPEHRRKSEPTIKCTATQEGGRYLPSGIFPEKSWLASPGSPRAQQAGIA 997
S L S+LVS S P I+C G+ L P PG P + G A
Sbjct: 318 ADSPWLLSNLVSRMISEGSSP-IRCP-----GQCLSPAPRP-------PGEPVSPAGGAA 364
Query: 998 HTLPSSSACCLAYENPG--------TPCRPTSPKPLSPRPSAQRMGLHYPGRGSAISMVS 1049
A PG T C P P P +PRP P + +S
Sbjct: 365 QDSQDPEAAA----GPGGVELVDMETLCAPPPPAPAAPRPG--------PAQPGPCLFLS 412
Query: 1050 LGSYSYVDSSSGDPERPKIPKGQTSFLLSLQTLNQDEQKEESREGGQG-PRGLGTVP 1105
+ + P R P S S + +D+++EE E G P G GT P
Sbjct: 413 NPTRDTITPLWAAPGRAARPGRACSAACSEEEDEEDDEEEEDAEDSAGSPGGRGTGP 469
Score = 40.8 bits (94), Expect = 0.008
Identities = 77/353 (21%), Positives = 121/353 (34%), Gaps = 58/353 (16%)
Query: 380 SPAPT---QLSGPIPAFQSGAPHLQGPCKPGGFRLQRASQDTPSAGLLGENQLRQDSRSC 436
SPAP +L GP+PA +G Q P +PG + P+ G S
Sbjct: 146 SPAPEALRELPGPLPATDTGPGGAQSPVRPGCDCEGNRPAEPPAPG----------GTSP 195
Query: 437 LVASCLTSELVKLSAEEVPEPAECKSEQSPESRTQEPQGTQLAPRAADERETQKHLWGIS 496
+ ++L S+ + SP S +++ G +L + ET+ L S
Sbjct: 196 SSDPGIEADLRSRSSGGRGGRRSSQELSSPGSDSEDAGGARLGRMISSISETELEL---S 252
Query: 497 VQAGNQTSNYTSKYVLS-EESKSP-TRAKFPRQPSSEGTQVWSGDLMGCLEVSDSSDAPE 554
G+ +S +S S EE+ SP + + PR+P + G D +++
Sbjct: 253 SDGGSSSSGRSSHLTNSIEEASSPASEPEPPREPPRRPAFLPVG--------PDDTNSEY 304
Query: 555 TTQKSSAIDTSKAAEEAMVLDPIYREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTP 614
+ S D S+ A+ +L + +G S + G + PG +P
Sbjct: 305 ESGSESEPDLSEDADSPWLLSNLVSRMISEGSSPIRCP-----GQCLSPAPRPPGEPVSP 359
Query: 615 AGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETPSTEEP------------ 662
AG + P AG G ++ V AA P+ P
Sbjct: 360 AGGAAQDSQDPEAAAGPGGVELVDMETLCAPPPPAPAAPRPGPAQPGPCLFLSNPTRDTI 419
Query: 663 ------PGERLR-GESRSSGSGERGPEEAPE--------GGAAAARGQRPRVP 700
PG R G + S+ E EE E G+ RG P P
Sbjct: 420 TPLWAAPGRAARPGRACSAACSEEEDEEDDEEEEDAEDSAGSPGGRGTGPSAP 472
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 53.9 bits (128), Expect = 9e-07
Identities = 73/238 (30%), Positives = 89/238 (37%), Gaps = 37/238 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAG----------NECELPAAPIQGAGDGALQRVAQAAELGRVL 647
G E G+ GP G + P G LP P DGA A + G
Sbjct: 478 GSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGA------AGKKGEAG 531
Query: 648 VPQAASEETPSTEEPPGERL-RGESRSSGS-GERGPEEAPEGGAAAARGQRP-RVPALEP 704
+P A E P + PG + G+ S G+ G+RG PEG P +P
Sbjct: 532 LPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLP-GPEGPKGEPGIMGPFGMPGTSI 590
Query: 705 PQPP--RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGG-VPAPTTEGRRW-GSSGPE 760
P PP +G R G PG F P + P G V AP +G + G GP
Sbjct: 591 PGPPGPKGDRGGPGIPG----FKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPR 646
Query: 761 GLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR-TAGPAGAGHTGTSGDLGSRG 817
GLP PP G GD A E P G +GP G G G GD G +G
Sbjct: 647 GLP--GPPGPMGLRGV----GDTGAKGE--PGVRGPPGPSGPRGVGTQGPKGDTGQKG 696
Score = 40.8 bits (94), Expect = 0.008
Identities = 65/273 (23%), Positives = 94/273 (34%), Gaps = 37/273 (13%)
Query: 574 LDPIYREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGA 633
LD ++ ++ + + E + GP G G G + P GN G G
Sbjct: 227 LDILFEKKCERKICECEKGDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGG 286
Query: 634 LQRV-AQAAELGRVLVPQAASEE-TPSTEEPPGER-LRGESRSSGS----------GERG 680
+ E G P ++ +P P G R ++G + G GE G
Sbjct: 287 IPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPG 346
Query: 681 PEE------APEGGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGR 734
P AP G +G+R + P P G EPG+ +G
Sbjct: 347 PPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPI-----GVGEPGQPGPRGP-----EGV 396
Query: 735 PLATESPG-GVPAPTTEGRRWGSSGPEGLP------RENPPAAAGRDAPPLHHGDASAWP 787
P PG G P P E G +GP+GL + G P G S
Sbjct: 397 PGERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGE 456
Query: 788 EFVPQAAGDR-TAGPAGAGHTGTSGDLGSRGPS 819
+ + G GPAG G G+ G++G GP+
Sbjct: 457 QGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPT 489
Score = 31.6 bits (70), Expect = 4.7
Identities = 43/168 (25%), Positives = 57/168 (33%), Gaps = 48/168 (28%)
Query: 663 PGERLRGESRSSGSGERGPEEAPE-GGAAAARGQ--RPRV------PALEPPQPPRGLRK 713
PG +GE+ GERGP P G RG+ +P + P P+ PRG++
Sbjct: 271 PGNAQKGEA-----GERGPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQG 325
Query: 714 GAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGR 773
PG K KG P G P P +GS G G+ ++ G+
Sbjct: 326 ITGPPGDPGP--KGFQGNKGEP-------GPPGP------YGSPGAPGIGQQGIKGERGQ 370
Query: 774 DAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSE 821
+ P GP G G G G G G E
Sbjct: 371 EGRP-------------------GAPGPIGVGEPGQPGPRGPEGVPGE 399
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 53.5 bits (127), Expect = 1e-06
Identities = 74/252 (29%), Positives = 86/252 (34%), Gaps = 45/252 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G +G+ GP G AG P +P GA V A G P E P
Sbjct: 324 GARGSDGQPGPPGPPGTAG----FPGSP------GAKGEVGPAGSPGSNGAPGQRGEPGP 373
Query: 658 S----TEEPPGERLRGESRSSGSGERGPEEAPEG-GAAAARGQRPRVPALEPPQPPRGLR 712
+ PPG S G GE GP P G ARG P PA P GLR
Sbjct: 374 QGHAGAQGPPGPPGINGS-PGGKGEMGPAGIPGAPGLMGARG--PPGPAGANGAP--GLR 428
Query: 713 KGAQEPGKRPTFSKV----------------TSFRKGRPLATESPGGVPAPTTEGRRW-- 754
GA EPGK + G+ + PG P G R
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP 488
Query: 755 ---GSSGPEGLPRENPPAAAGRDAPPLHHGDASAWP--EFVPQAAGDR--TAGPAGAGHT 807
G +GP G+P E PA P A+ P + VP G R P G G
Sbjct: 489 GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSD 548
Query: 808 GTSGDLGSRGPS 819
G G GS+G S
Sbjct: 549 GKPGPPGSQGES 560
Score = 52.4 bits (124), Expect = 3e-06
Identities = 69/232 (29%), Positives = 82/232 (35%), Gaps = 46/232 (19%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G E G QGP G P G++ + QG + P
Sbjct: 609 GKNGETGPQGPPGPTGPGGDKGDTGPPGPQGL------------------------QGLP 644
Query: 658 STEEPPGERLRGESRSSG-SGERGPEEAPEG-GAAAARGQRPRVPALEPPQPPRGLRKGA 715
T PPGE G+ G G+ G AP G G A A G+R P GLR GA
Sbjct: 645 GTGGPPGEN--GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAP----GLRGGA 698
Query: 716 QEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDA 775
PG P K + G P A +PG P G GS GP+G E P G D
Sbjct: 699 GPPG--PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGL-GSPGPKGDKGE--PGGPGADG 753
Query: 776 PPLHHGDASAWPEFVPQA----AGDRTAG-----PAGAGHTGTSGDLGSRGP 818
P G P GD+ G P AG G+ G+ G GP
Sbjct: 754 VPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP 805
Score = 51.2 bits (121), Expect = 6e-06
Identities = 69/242 (28%), Positives = 79/242 (32%), Gaps = 27/242 (11%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECE-----LPAAPIQGAGDGALQRVAQAAELGRVLVPQAA 652
GP + G G GGK AG E L AP G G G P AA
Sbjct: 660 GPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAA 719
Query: 653 SEETPSTEEPPGERLRGESRSSGSGERGPEEAPEG-GAAAARGQRPRVPALEPPQPPRGL 711
TP + PGER G G++G P G G R + PP P
Sbjct: 720 G--TPGLQGMPGER-GGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAG-- 774
Query: 712 RKGAQEPGKRPTFSKVTSFRKGRP-----LATESPGGVPAPTTEGRRWGSSGPEGLPREN 766
+ G + G P + R G P P G P + G G G P E
Sbjct: 775 QPGDKGEGGAPGLPGIAGPR-GSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK 833
Query: 767 ----PPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
PP AG PP G A P PQ P G G G G G GP +
Sbjct: 834 GEGGPPGVAG---PP--GGSGPAGPPG-PQGVKGERGSPGGPGAAGFPGARGLPGPPGSN 887
Query: 823 CN 824
N
Sbjct: 888 GN 889
Score = 50.1 bits (118), Expect = 1e-05
Identities = 65/235 (27%), Positives = 85/235 (36%), Gaps = 32/235 (13%)
Query: 598 GPGAEEGEQGPGGGKTPAG--NECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE 655
GP +GE+G GG AG LP P G + G+ P A
Sbjct: 855 GPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGP---PGPSGSPGKDGPPGPAGNT 911
Query: 656 ----TPSTEEPPGERLRGESRSSGS-GERGPEEAPE----GGAAAARGQR--PRVPALEP 704
+P P G+ G+ GS G +GP AP G ARG P +P
Sbjct: 912 GAPGSPGVSGPKGDA--GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRG 969
Query: 705 PQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPR 764
P+G++ + +PG + S +G P PG + E R G+ G +GLP
Sbjct: 970 SPGPQGVKGESGKPG-----ANGLSGERGPPGPQGLPG-LAGTAGEPGRDGNPGSDGLP- 1022
Query: 765 ENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPS 819
GRD P GD A P G G SGD G GP+
Sbjct: 1023 -------GRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPA 1070
Score = 48.5 bits (114), Expect = 4e-05
Identities = 73/253 (28%), Positives = 86/253 (33%), Gaps = 67/253 (26%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP GE+GP G + G PA P AG+ V + R + +
Sbjct: 495 GPNGIPGEKGPAGERGAPG-----PAGPRGAAGEPGRDGVPGGPGM-RGMPGSPGGPGSD 548
Query: 658 STEEPPGERLRGESRSSG----SGERGPE-----EAPEG--GAAAARGQRPRVPALEPPQ 706
PPG + GES G SG RG P+G GA G+R P PQ
Sbjct: 549 GKPGPPGSQ--GESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG-PGGPGPQ 605
Query: 707 PPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGP------E 760
P PGK P G P PT G G +GP +
Sbjct: 606 GP---------PGKN---------------GETGPQGPPGPTGPGGDKGDTGPPGPQGLQ 641
Query: 761 GLPREN-PPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTA----GP----------AGAG 805
GLP PP G+ P GDA A P GD A GP GAG
Sbjct: 642 GLPGTGGPPGENGKPGEPGPKGDAGA--PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAG 699
Query: 806 HTGTSGDLGSRGP 818
G G G+ GP
Sbjct: 700 PPGPEGGKGAAGP 712
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/237 (29%), Positives = 85/237 (35%), Gaps = 59/237 (24%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G+ GP G PAGN AP G Q E G +P
Sbjct: 894 GPSGSPGKDGPPG---PAGNT----GAPGSPGVSGPKGDAGQPGEKG-----------SP 935
Query: 658 STEEPPGER----LRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALE----PP 705
+ PPG + G + + G G GP +P +P L PP
Sbjct: 936 GAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPP 995
Query: 706 QPPR--GLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP 763
P GL A EPG R G P + PG +P +G R G +G G P
Sbjct: 996 GPQGLPGLAGTAGEPG-----------RDGNPGSDGLPGRDGSPGGKGDR-GENGSPGAP 1043
Query: 764 RENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR-TAGPAG-AGHTGTSGDLGSRGP 818
A G PP G A +GDR +GPAG AG G +G G+ GP
Sbjct: 1044 -----GAPGHPGPPGPVGPAG--------KSGDRGESGPAGPAGAPGPAGSRGAPGP 1087
Score = 47.4 bits (111), Expect = 8e-05
Identities = 63/232 (27%), Positives = 77/232 (33%), Gaps = 60/232 (25%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GPGA+ G G G + P G P P AG + A L + P+ + E
Sbjct: 748 GPGAD-GVPGKDGPRGPTG-----PIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERG 801
Query: 658 STEEPPGERLRG----ESRSSGSGERG-PEEAPEGGAAAARGQRPRVPALEPPQPPRGLR 712
T P G G GERG P E EGG G P P P+G++
Sbjct: 802 ETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGP-PGGSGPAGPPGPQGVK 860
Query: 713 KGAQEPGKRPTFSKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAA 770
PG P A PG G+P P G GP G P
Sbjct: 861 GERGSPGG--------------PGAAGFPGARGLPGPPGSNGNPGPPGPSGSP------- 899
Query: 771 AGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
G+D PP GPAG +TG G G GP ++
Sbjct: 900 -GKDGPP----------------------GPAG--NTGAPGSPGVSGPKGDA 926
Score = 46.2 bits (108), Expect = 2e-04
Identities = 64/225 (28%), Positives = 81/225 (36%), Gaps = 47/225 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAG-DGALQRVAQAAELGRVLVPQAASEET 656
GP E G+ GP G P G P AG DG R + E G +P +
Sbjct: 201 GPPGEPGQAGPSGPPGPPG-----AIGPSGPAGKDGESGRPGRPGERG---LPGPPGIKG 252
Query: 657 PSTEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQR--PRVPALEPPQPPRGLRK 713
P+ P ++G G +GE+G E GA +G+ P P PRG
Sbjct: 253 PA-GIPGFPGMKGHRGFDGRNGEKG-----ETGAPGLKGENGLPGENGAPGPMGPRG--- 303
Query: 714 GAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGR 773
PG+R GRP PG A +G R GS G G P PP AG
Sbjct: 304 ---APGER-----------GRP---GLPGAAGARGNDGAR-GSDGQPGPP--GPPGTAGF 343
Query: 774 DAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGP 818
P G+ P + P G G G G++GP
Sbjct: 344 PGSPGAKGEVG------PAGSPGSNGAPGQRGEPGPQGHAGAQGP 382
Score = 46.2 bits (108), Expect = 2e-04
Identities = 74/240 (30%), Positives = 84/240 (35%), Gaps = 44/240 (18%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-T 656
G E G GP G K PAG +P P G R + E G P E
Sbjct: 237 GRPGERGLPGPPGIKGPAG----IPGFPGMKGHRGFDGRNGEKGETG---APGLKGENGL 289
Query: 657 PSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQ 716
P PG GERG P GAA ARG + P PP G A
Sbjct: 290 PGENGAPGPM----GPRGAPGERGRPGLP--GAAGARGNDGARGSDGQPGPP-GPPGTAG 342
Query: 717 EPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEG-LPRENPPAAAGRDA 775
PG KG SPG AP G+R G GP+G + PP G +
Sbjct: 343 FPGSPGA--------KGEVGPAGSPGSNGAP---GQR-GEPGPQGHAGAQGPPGPPGING 390
Query: 776 PPLHHGDASAWPEFVPQAAGDRTA----GPAGA----------GHTGTSGDLGSRGPSSE 821
P G+ P +P A G A GPAGA G G +G G GP E
Sbjct: 391 SPGGKGEMG--PAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGE 448
Score = 42.7 bits (99), Expect = 0.002
Identities = 67/245 (27%), Positives = 83/245 (33%), Gaps = 55/245 (22%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G + GE+G G + P G L A I GA A P
Sbjct: 924 GDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARG------------------LAGPPGMP 965
Query: 658 STEEPPGER-LRGESRSSG----SGERGPEEAPEG--GAAAARGQRPRVPALEPPQPPRG 710
PG + ++GES G SGERGP P+G G A G+ P + G
Sbjct: 966 GPRGSPGPQGVKGESGKPGANGLSGERGPP-GPQGLPGLAGTAGE----PGRDGNPGSDG 1020
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--GVPAPTTEGRRWGS------SGPEGL 762
L PG K G P A +PG G P P + G +GP G
Sbjct: 1021 LPGRDGSPG-----GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGA 1075
Query: 763 PRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR--------TAGPAGAGHTGTSGDLG 814
P P + G P GD E AAG + P G G G +G
Sbjct: 1076 P--GPAGSRGAPGPQGPRGDKGETGE--RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIG 1131
Query: 815 SRGPS 819
S GP+
Sbjct: 1132 SPGPA 1136
Score = 33.5 bits (75), Expect = 1.2
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 25/146 (17%)
Query: 683 EAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPG 742
E P G A Q P P +PP G +G Q P P + R G P PG
Sbjct: 78 EIPFGECCAVCPQPPTAPT----RPPNG--QGPQGPKGDPGPPGIPG-RNGDPGIPGQPG 130
Query: 743 GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
GS GP G+ E+ P +P D + A AGP
Sbjct: 131 SP----------GSPGPPGIC-ESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPP 179
Query: 803 G-------AGHTGTSGDLGSRGPSSE 821
G +GH G+ G G +GP E
Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQGPPGE 205
Score = 33.1 bits (74), Expect = 1.6
Identities = 42/161 (26%), Positives = 54/161 (33%), Gaps = 21/161 (13%)
Query: 674 SGSGERGPEEAPEGGAAAARGQRPRVPALEPPQP------------PRGLRKGAQEPGKR 721
+G G +GP+ P R P +P +P P P G + + +
Sbjct: 100 NGQGPQGPKGDPGPPGIPGRNGDPGIPG-QPGSPGSPGPPGICESCPTGPQNYSPQYDSY 158
Query: 722 PTFSKVT-SFRKGRPLATESPGGVPAPTTEGRRW--GSSGPEGLPRENPPAAAGRDAPPL 778
S V G P PG P T G GS G +G P E P AG PP
Sbjct: 159 DVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGE--PGQAGPSGPP- 215
Query: 779 HHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPS 819
G A P + P G G G G +GP+
Sbjct: 216 --GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPA 254
Score = 32.3 bits (72), Expect = 2.7
Identities = 37/125 (29%), Positives = 43/125 (34%), Gaps = 25/125 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQG-----AGDGALQRVAQAAELGRVLVPQAA 652
GP G GP G + G E AA I+G GA A + G + P A
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPA 1136
Query: 653 SEETP-STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQR--------PRVPALE 703
P PPG + SG GP P G RG+R P P
Sbjct: 1137 GPRGPVGPSGPPG-------KDGTSGHPGPIGPP--GPRGNRGERGSEGSPGHPGQPG-- 1185
Query: 704 PPQPP 708
PP PP
Sbjct: 1186 PPGPP 1190
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 53.5 bits (127), Expect = 1e-06
Identities = 76/243 (31%), Positives = 87/243 (35%), Gaps = 40/243 (16%)
Query: 599 PGAE--EGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE- 655
PGA G QGP G K G P I G G + G VP +
Sbjct: 283 PGAAGLPGPQGPSGAKGEPGTRG--PPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRG 340
Query: 656 TPSTEEPPGER----LRGESRSSGS----GERGPEEAPEGGAAAARGQRPRVPALEPPQP 707
P + PGE+ L G GS G RGP P+G A G P VP + Q
Sbjct: 341 EPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPP-GPKGEAGP--GGPPGVPGIRGDQG 397
Query: 708 PRGLRKGAQEPGKR----------PTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSS 757
P GL PG+R PT KG P T PGG P G G
Sbjct: 398 PSGLAGKPGVPGERGLPGAHGPPGPTGP------KGEPGFTGRPGG---PGVAG-ALGQK 447
Query: 758 GPEGLPRENPPAAAGRDAPPLHHGDAS-AWPEFVPQAAGD-RTAGPAGAGHTGTSGDLGS 815
G GLP + P G P G A P+ +P G+ GP G G G G G
Sbjct: 448 GDLGLPGQ--PGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGP 505
Query: 816 RGP 818
GP
Sbjct: 506 TGP 508
Score = 47.4 bits (111), Expect = 8e-05
Identities = 63/224 (28%), Positives = 75/224 (33%), Gaps = 30/224 (13%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP + G +G G + G P P G + + G P E P
Sbjct: 135 GPPGQPGLRGEPGIRGDQG--LRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGP 192
Query: 658 STEE-PPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQ 716
E PPG+R G +G G+ G AP G A P L P GL
Sbjct: 193 QGEPGPPGDR--GLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKP----GLDGLPG 246
Query: 717 EPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAP 776
PG + P GVP P E G GP G+ P AAG P
Sbjct: 247 APGDK---------------GESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGP 291
Query: 777 PLHHGDASAWPEFVPQAAG-DRTAGPAGAGHTGTSGDLGSRGPS 819
G + A E P G GP G G G G G RGP+
Sbjct: 292 ---QGPSGAKGE--PGTRGPPGLIGPTGYGMPGLPGPKGDRGPA 330
Score = 42.7 bits (99), Expect = 0.002
Identities = 70/249 (28%), Positives = 85/249 (34%), Gaps = 39/249 (15%)
Query: 597 CGPGAEEGEQGPGG--GKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASE 654
CGP A G G GG G P + P+ G + Q E+ L+P
Sbjct: 22 CGPRASSGG-GAGGAAGYAPVKYIQPMQKGPV---GPPFREGKGQYLEMPLPLLPMDLKG 77
Query: 655 ET-----PSTEEPPGER----LRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPP 705
E P PPG G + G+ GP P G + + P +P P
Sbjct: 78 EPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPA-GPPGFSRMGKAGPPGLPGKVGP 136
Query: 706 QPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLP 763
GLR EPG R +G P PG G+ P G + G GP G
Sbjct: 137 PGQPGLRG---EPGIRGDQGL-----RGPPGPPGLPGPSGITIPGKPGAQ-GVPGPPGFQ 187
Query: 764 RENPPAAAGRDAPPLHHG---DASAWPEFVPQAAGDRTA-------GPAGAGHTGTSGDL 813
E P G PP G D +P A G A GPAG G G G
Sbjct: 188 GE--PGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLP 245
Query: 814 GSRGPSSES 822
G+ G ES
Sbjct: 246 GAPGDKGES 254
Score = 32.0 bits (71), Expect = 3.6
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 1083 NQDEQKEESREGGQGPRGLGTVPWLRDLPGSESVPWRLRKVKSKAPSASLDQAMPSLPRA 1142
++ E E+ G QGP+GLG P LPGS +P R + P +A P P
Sbjct: 338 DRGEPGEDGEPGEQGPQGLGGPP---GLPGSAGLPGR------RGPPGPKGEAGPGGPPG 388
Query: 1143 QS--RGAQATATPRGGLSGAP 1161
RG Q + GL+G P
Sbjct: 389 VPGIRGDQGPS----GLAGKP 405
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 52.8 bits (125), Expect = 2e-06
Identities = 76/255 (29%), Positives = 90/255 (35%), Gaps = 62/255 (24%)
Query: 599 PGAEEGEQGPGGGKTPAGNECELPAAPIQGA-GDGALQRVAQAAELGRVLVPQAASEETP 657
PG + G+QGP G P G E A + G G G +P P
Sbjct: 155 PG-KPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGP 213
Query: 658 STEEPPGERLRGESRSSGS-------------------------GERGPEEAPEGGAAAA 692
S PPG RGE+ G GERGPE + GAA A
Sbjct: 214 SG--PPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGA 271
Query: 693 RGQRPRVPALE--PPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTE 750
GQ P +P + P P G P P F K G P G P
Sbjct: 272 PGQ-PGIPGTKGLPGAP------GIAGPPGPPGFGK-----PGLPGLKGERGPAGLPGGP 319
Query: 751 GRRWGSSGPEGLPRE----NPPAAAGRDAP---PLHHGDASAWPEFVPQAAGDRTAGPAG 803
G + G GP GLP + PP G P P HG +P G+ GPAG
Sbjct: 320 GAK-GEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHG--------LPGPKGE--TGPAG 368
Query: 804 -AGHTGTSGDLGSRG 817
AG+ G G+ GS G
Sbjct: 369 PAGYPGAKGERGSPG 383
Score = 48.1 bits (113), Expect = 5e-05
Identities = 72/269 (26%), Positives = 88/269 (32%), Gaps = 66/269 (24%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G QGP G + P G GA Q G +P A P
Sbjct: 244 GPIGPPGPQGPPGERGPEGI-----------GKPGAAGAPGQPGIPGTKGLPGA-----P 287
Query: 658 STEEPPGERLRGESRSSG-SGERGPEEAPEG-GAAAARGQR--PRVPALEPP------QP 707
PPG G+ G GERGP P G GA +G P P L P Q
Sbjct: 288 GIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQG 347
Query: 708 PRGLRKGAQEPGKR-------PTFSKVTSFRKGRPLATESPGGVPAPTTEGRRW------ 754
P+G+ PG + P +G P + PG P +G +
Sbjct: 348 PKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPG 407
Query: 755 -----GSSGPEGLPRENPPAAAGRDAPPLHHGDASA-------------WPEFVPQAAGD 796
G GP GLP P AG P H+G+A P +P G
Sbjct: 408 PKGDPGVGGPPGLP--GPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGS 465
Query: 797 R-------TAGPAGAGHTGTSGDLGSRGP 818
+ GPAG G +G G GP
Sbjct: 466 KGDPGSPGPPGPAGIATKGLNGPTGPPGP 494
Score = 40.4 bits (93), Expect = 0.010
Identities = 59/223 (26%), Positives = 76/223 (34%), Gaps = 31/223 (13%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP +G+ GP G P G P P G + + + G P P
Sbjct: 121 GPYGPKGDVGPAGLPGPRG-----PPGPPGIPGPAGISVPGKPGQQGPTGAP--GPRGFP 173
Query: 658 STEEPPG-ERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQ 716
+ PG + G+ G G P E G +G P P+ P RG
Sbjct: 174 GEKGAPGVPGMNGQKGEMGYG--APGRPGERGLPGPQG--PTGPSGPPGVGKRGENGVPG 229
Query: 717 EPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAP 776
+PG + +G P P G P P G GPEG+ + A G+
Sbjct: 230 QPGIKGD--------RGFP-GEMGPIGPPGPQGPP---GERGPEGIGKPGAAGAPGQPGI 277
Query: 777 PLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPS 819
P G A P AG GP G G G G G RGP+
Sbjct: 278 PGTKGLPGA-----PGIAGP--PGPPGFGKPGLPGLKGERGPA 313
Score = 34.7 bits (78), Expect = 0.55
Identities = 37/116 (31%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 706 QPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATES-PGGVPAPTTEGRRWGSSGPEGLPR 764
Q P G+ KG K F T KG + E G P P G SGP G P
Sbjct: 26 QMPTGI-KGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPG 84
Query: 765 ENPPAAAGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAG-AGHTGTSGDLGSRGP 818
P G P G ++ VP G GP G G G +G G RGP
Sbjct: 85 YGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGP 140
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 51.6 bits (122), Expect = 4e-06
Identities = 76/262 (29%), Positives = 92/262 (35%), Gaps = 51/262 (19%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVP------ 649
H GP E+G QGP G P G P +G+ LQ + E G P
Sbjct: 687 HEGPTGEKGAQGPPGSAGPPGYPG--PRGVKGTSGNRGLQ--GEKGEKGEDGFPGFKGDV 742
Query: 650 -QAASEETPSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPR--VPALEPPQ 706
+ P P GE G G + EE P G A G++ + VP L P
Sbjct: 743 GLKGDQGKPGAPGPRGE--DGPEGPKGQAGQAGEEGPPGSA----GEKGKLGVPGL-PGY 795
Query: 707 PPRGLRKGA----------QEPGKRPTFSKV----------TSFRKGRPLATESPG---- 742
P R KG+ E GK + + +G+P AT PG
Sbjct: 796 PGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGD 855
Query: 743 ----GVPAPTTEGRRWGSSGPEGLP-RENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDR 797
G P E G GP G P + PP G+D P H G F Q
Sbjct: 856 VGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGEL-GFQGQTGPPG 914
Query: 798 TAGPAG-AGHTGTSGDLGSRGP 818
AG G G TG G LG RGP
Sbjct: 915 PAGVLGPQGKTGEVGPLGERGP 936
Score = 51.6 bits (122), Expect = 4e-06
Identities = 76/243 (31%), Positives = 93/243 (38%), Gaps = 35/243 (14%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEET- 656
GP G +GP G + G P P Q G + G VL PQ + E
Sbjct: 875 GPPGFPGPKGPPGHQGKDGR----PGHPGQRGELGFQGQTGPPGPAG-VLGPQGKTGEVG 929
Query: 657 -------PSTEEPPGER-LRG-ESRSSGSGERGPEEAPEG--GAAAARGQRPRVPALEPP 705
P PPGE+ L G E R GE GP P G G A RG P P
Sbjct: 930 PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPP-GPLGKEGPAGLRGFPG--PKGGPG 986
Query: 706 QP-PRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPR 764
P P GL+ PG P + + +G PL G+P + G +G +G
Sbjct: 987 DPGPTGLKGDKGPPG--PVGANGSPGERG-PLGPAGGIGLPGQSGSEGPVGPAGKKGSRG 1043
Query: 765 EN-PPAAAGRDAPPLHHGDASAWPEFVPQAAG----DRTAGPAGA-GHTGTSGDLGSRGP 818
E PP G+D P G P P AAG + G GA GH G+ GD G GP
Sbjct: 1044 ERGPPGPTGKDGIPGPLG-----PLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGP 1098
Query: 819 SSE 821
+
Sbjct: 1099 PGQ 1101
Score = 48.5 bits (114), Expect = 4e-05
Identities = 70/261 (26%), Positives = 85/261 (32%), Gaps = 55/261 (21%)
Query: 596 HCGPGAEEGEQGPGGG---KTPAGNECELPAAPIQGAGDGALQRVAQAAELG-------R 645
H G ++G+ GP G + PAG+ P P DGA R G R
Sbjct: 1086 HKGSKGDKGDAGPPGQPGIRGPAGH----PGPP---GADGAQGRRGPPGLFGQKGDDGVR 1138
Query: 646 VLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAPEG----------- 687
V PPGE+ GE GS G RGP+ P G
Sbjct: 1139 GFVGVIGPPGLQGLPGPPGEK--GEVGDVGSMGPHGAPGPRGPQ-GPTGSEGTPGLPGGV 1195
Query: 688 ---GAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGV 744
GA +G+R PP P G+ PG + + P P G
Sbjct: 1196 GQPGAVGEKGERGDAGDPGPPGAP-GI------PGPKGDIGEKGD---SGPSGAAGPPGK 1245
Query: 745 PAPTTEGRRWGSSGPEGLPRE----NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAG 800
P E GS GP GLP + P +G D P GD P A
Sbjct: 1246 KGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGA 1305
Query: 801 PAGAGHTGTSGDLGSRGPSSE 821
P G G SG +G G E
Sbjct: 1306 PGPPGKRGPSGHMGREGREGE 1326
Score = 45.8 bits (107), Expect = 2e-04
Identities = 69/267 (25%), Positives = 90/267 (33%), Gaps = 65/267 (24%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECE--------------LPAAPIQGAGDGA------LQRV 637
GP E+G +GP G AG E LP P + G+ L +
Sbjct: 755 GPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPI 814
Query: 638 AQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-GERGPE-EAPEGGAAAARGQ 695
+ + G+ P E P PG R GE G+ G+ GP+ + + GA G+
Sbjct: 815 GEKGKSGKTGQPGLEGERGP-----PGSR--GERGQPGATGQPGPKGDVGQDGAPGIPGE 867
Query: 696 R--------PRVPALEPPQPPRGLRKGAQEPGKR-------------PTFSKVTSFRKGR 734
+ P P + P +G PG+R P + G
Sbjct: 868 KGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGE 927
Query: 735 --PLATESPGGVPAPTTEGRRWGSSGPEGLPRE-NPPAAAGRDAPPLHHGDASAWPEFVP 791
PL P G P P E G G EG E PP G++ P G P
Sbjct: 928 VGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRG--------FP 979
Query: 792 QAAGDRTAGPAGAGHTGTSGDLGSRGP 818
G GP G TG GD G GP
Sbjct: 980 GPKG----GPGDPGPTGLKGDKGPPGP 1002
Score = 45.4 bits (106), Expect = 3e-04
Identities = 70/253 (27%), Positives = 87/253 (34%), Gaps = 48/253 (18%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQA-ASE 654
H G EEG +GP G + G P P G ++GR P A +
Sbjct: 498 HPGLKGEEGAEGPQGPRGLQG-----PHGPPGRVG-----------KMGR---PGADGAR 538
Query: 655 ETPSTEEPPGER-------LRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQP 707
P P G+R L GE G + P G + P P + +P
Sbjct: 539 GLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEP 598
Query: 708 -PRGLRKGAQEPGKRPTFSKVTSFRKGRPLATES--PGGVPAPTTEGRRWGSSG---PEG 761
PRGL PG PT + G P A + P G P P + GS G P+G
Sbjct: 599 GPRGLLGPRGSPG--PTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQG 656
Query: 762 L--------PRENP--PAAAGRDAP---PLHHGDASAWPEFVPQAAGDRTAGPAGAGHTG 808
L P NP P G D P P H G P + P G G
Sbjct: 657 LIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKG 716
Query: 809 TSGDLGSRGPSSE 821
TSG+ G +G E
Sbjct: 717 TSGNRGLQGEKGE 729
Score = 39.7 bits (91), Expect = 0.017
Identities = 64/255 (25%), Positives = 81/255 (31%), Gaps = 45/255 (17%)
Query: 594 VSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAAS 653
V GP E+GE+G G P G E + G G+ + G P A
Sbjct: 571 VGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGP-RGSPGPTGRPGVTGIDGAPGAKG 629
Query: 654 EETPSTEE-PPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLR 712
P E PPG+ + G GP+ P +P L P G
Sbjct: 630 NVGPPGEPGPPGQ----QGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLG-- 683
Query: 713 KGAQEPG-KRPTFSKVTSFRKGRPLATESPGGVPAPT----TEGRRW-----GSSGPEGL 762
PG + PT K P + P G P P T G R G G +G
Sbjct: 684 ----HPGHEGPTGEKGAQ----GPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGF 735
Query: 763 P-------------RENPPAAAGRDAPPLHHGDA-SAWPEFVPQAAGDR-----TAGPAG 803
P + P G D P G A A E P +AG++ P
Sbjct: 736 PGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGY 795
Query: 804 AGHTGTSGDLGSRGP 818
G G G +G GP
Sbjct: 796 PGRPGPKGSIGFPGP 810
Score = 37.0 bits (84), Expect = 0.11
Identities = 48/177 (27%), Positives = 66/177 (37%), Gaps = 27/177 (15%)
Query: 662 PPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQP--------PRGLRK 713
PPG + + +G +GP + + A A Q+ ++ PP P P GL
Sbjct: 438 PPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGL-- 495
Query: 714 GAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-NPPAAAG 772
PG + + P + P G P + R G+ G GLP + P G
Sbjct: 496 ----PGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRG 551
Query: 773 RDAPPLHHGDASAWPEF-------VPQAAGDRTA----GPAG-AGHTGTSGDLGSRG 817
D P G+ +F P G+R A GP G AG G G LG RG
Sbjct: 552 FDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRG 608
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 51.2 bits (121), Expect = 6e-06
Identities = 63/254 (24%), Positives = 83/254 (32%), Gaps = 35/254 (13%)
Query: 582 ALQGLSEFKAATVSHCGPGAEEGEQGPGG----GKTPAGNECELPAAPIQGAGDGALQRV 637
AL L + V+ GP E+GE GP G GK E L G
Sbjct: 637 ALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTP 696
Query: 638 AQAAELGRVLVPQAASEETPSTEEPPG----ERLRGE--SRSSGSGERGP--EEAPEGGA 689
G P P E+ G L+G + G+ GP E+ PEG
Sbjct: 697 GTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVG 756
Query: 690 AAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPG--GVPAP 747
+ +P +P ++ P +G++ PG+ + G P PG G P P
Sbjct: 757 RPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGP 816
Query: 748 TTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHT 807
T E GS G +G P A PP G G T
Sbjct: 817 TGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQ---------------------QGQT 855
Query: 808 GTSGDLGSRGPSSE 821
G G G +GP E
Sbjct: 856 GLRGTPGEKGPRGE 869
Score = 48.1 bits (113), Expect = 5e-05
Identities = 68/249 (27%), Positives = 95/249 (38%), Gaps = 42/249 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAP-------IQGAG-----DGALQRVAQAAELGR 645
GP + E+G G + P+G LP +P IQG DG + + G
Sbjct: 1177 GPPGPQAEKGSEGIRGPSG----LPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGP 1232
Query: 646 -----VLVPQAASEET--PSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPR 698
++ P +T P P G+ G+ GS R P E GA +G RP
Sbjct: 1233 AGPPGLMGPPGFKGKTGHPGLPGPKGDC--GKPGPPGSTGR-PGAEGEPGAMGPQG-RPG 1288
Query: 699 VPA-LEPPQPP-----RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGR 752
P + PP PP G+ + + T + + G+P P G P P E
Sbjct: 1289 PPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQP----GPPGHPGPPGEPG 1344
Query: 753 RWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGD 812
G++G EG PP G PP GD A + R P G G +G+ G
Sbjct: 1345 TDGAAGKEG-----PPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGP 1399
Query: 813 LGSRGPSSE 821
+G GP+ E
Sbjct: 1400 VGPPGPAGE 1408
Score = 43.9 bits (102), Expect = 0.001
Identities = 65/230 (28%), Positives = 80/230 (34%), Gaps = 33/230 (14%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE 655
+ G E+GE GP G + G P P G+ Q + E G +
Sbjct: 1109 YTGSAGEKGEPGPPGSEGLPG-----PPGPAGPRGERGPQ--GNSGEKG-----DQGFQG 1156
Query: 656 TPSTEEPPGERLRGESRSSGS-GERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKG 714
P PPG G GS G GP+ E G+ RG + PP PP G
Sbjct: 1157 QPGFPGPPGPP--GFPGKVGSPGPPGPQA--EKGSEGIRGPSGLPGSPGPPGPP-----G 1207
Query: 715 AQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRW--GSSGPEGLPRENPPAAAG 772
Q P + G+P PG P G G +G GLP P G
Sbjct: 1208 IQGPAGLDGLDG----KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLP--GPKGDCG 1261
Query: 773 RDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSES 822
+ PP G A E P A G + P GH G G G GP+ S
Sbjct: 1262 KPGPPGSTGRPGAEGE--PGAMGPQ-GRPGPPGHVGPPGPPGQPGPAGIS 1308
Score = 41.6 bits (96), Expect = 0.005
Identities = 69/232 (29%), Positives = 80/232 (34%), Gaps = 29/232 (12%)
Query: 598 GPGAEEGEQGPGGGKTPAGNE--CELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE 655
GP GE+GP G G++ P P G +V G PQA
Sbjct: 1132 GPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPG----PQA---- 1183
Query: 656 TPSTEEPPGERLRGESRSSGS-GERGPE--EAPEG-GAAAARGQRPRVPALEPPQPPRGL 711
E E +RG S GS G GP + P G + +P + P P GL
Sbjct: 1184 -----EKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGL 1238
Query: 712 RKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAA 771
GK T KG PG P EG G+ GP+G P PP
Sbjct: 1239 MGPPGFKGK--TGHPGLPGPKGDCGKPGPPGSTGRPGAEGEP-GAMGPQGRP--GPPGHV 1293
Query: 772 GRDAPPLHHGDASAWPEFVPQAAGDRTA-GPAG-AGHTGTSGDLGSRGPSSE 821
G PP G A GDR A G G AG G G G GP E
Sbjct: 1294 GPPGPPGQPGPAGI---SAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGE 1342
Score = 40.8 bits (94), Expect = 0.008
Identities = 58/210 (27%), Positives = 77/210 (36%), Gaps = 36/210 (17%)
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGER---LRGESRSSGSGERG-PEEAPEGGAAA 691
R++Q AE G + + A++E P + L G GERG P G
Sbjct: 296 RISQKAERGAKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKG 355
Query: 692 ARGQ-----RPRVPALEPPQPPRGLR--KGAQEPGKRP--TFSKVTSFRKG--------- 733
ARG P P L+ + P+G + GA P P T K KG
Sbjct: 356 ARGNDCVRISPDAP-LQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPG 414
Query: 734 RPLATESPGGVPAPTTEGRRW--GSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVP 791
+P PG + +G++ G GPEGL E P G PP +P
Sbjct: 415 KPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGE--PGPPGLPGPP---------GIGLP 463
Query: 792 QAAGDRTAGPAGAGHTGTSGDLGSRGPSSE 821
GD P G G+SG G GP +
Sbjct: 464 GTPGDPGGPPGPKGDKGSSGIPGKEGPGGK 493
Score = 38.5 bits (88), Expect = 0.038
Identities = 66/269 (24%), Positives = 86/269 (31%), Gaps = 62/269 (23%)
Query: 580 EQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQ 639
E+ L GL + H GP E G G G + P G + P GA + Q
Sbjct: 1321 ERGLAGLPG-QPGPPGHPGPPGEPGTDGAAGKEGPPGKQ-GFYGPPGPKGDPGAAGQKGQ 1378
Query: 640 AAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRV 699
A E GR +P PG+ SG GP P G A RG
Sbjct: 1379 AGEKGRAGMPGG-----------PGK----------SGSMGPVGPP--GPAGERGH---- 1411
Query: 700 PALEPPQPPRGLRKGAQEPGKRPTFSKVTSF------------------RKGRPLATESP 741
P P GL G + ++ F R P+ +
Sbjct: 1412 PGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAA 1471
Query: 742 GGVPAPTTEG---RRWGSSGPEGLP-------RENPPAAAGRDAPPLHHGDAS---AWPE 788
G P P + R G+ G GLP R+ P G GD A
Sbjct: 1472 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGEN 1531
Query: 789 FVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
+P G + GP G G G +G +G +G
Sbjct: 1532 GLPGPPGPQ--GPPGYGKMGATGPMGQQG 1558
Score = 36.6 bits (83), Expect = 0.15
Identities = 71/256 (27%), Positives = 85/256 (33%), Gaps = 54/256 (21%)
Query: 598 GPGAEEGEQG-PGGGKTPA--GNECELPAAPI---------------QGAGDGALQRVAQ 639
GP G QG PG P G EL + PI Q A G L +
Sbjct: 916 GPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGE 975
Query: 640 AAELGRVLVPQA-------ASEETPSTEEPPGERLRGESRSSGS-GERGPEEAP----EG 687
+ G VP S E P EE G+ G+ GS G GP P E
Sbjct: 976 KGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEE 1035
Query: 688 GAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLA-TESPGGVPA 746
G RG P P P G PG + + R L G P
Sbjct: 1036 GPPGMRGS----PGPPGPIGPPGFPGAVGSPG-------LPGLQGERGLTGLTGDKGEPG 1084
Query: 747 PTTEGRRWGSSGPEGLP----RENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
P + G++GP GLP +AG P G E +P G AGP
Sbjct: 1085 PPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGS-----EGLPGPPG--PAGPR 1137
Query: 803 G-AGHTGTSGDLGSRG 817
G G G SG+ G +G
Sbjct: 1138 GERGPQGNSGEKGDQG 1153
Score = 36.2 bits (82), Expect = 0.19
Identities = 67/252 (26%), Positives = 88/252 (34%), Gaps = 43/252 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGD-GALQRVAQAAELGRVLVPQAASEET 656
G G +G G G G C + P GD G + A E G +P
Sbjct: 405 GDGGIKGVPGKPGRDGRPGEICVI--GPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGL 462
Query: 657 PSTEEPPG--ERLRGESRSSG-SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
P T PG +G+ SSG G+ GP P G +G++ P P P G +
Sbjct: 463 PGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKP--GKPGVKGEKGD-PCEVCPTLPEGFQN 519
Query: 714 GAQEPGKR---------------PTFSKVTSFRKGRP-LATESPGGVPAPTTEGRRWGSS 757
PGK P + KG P L+ S G + G+S
Sbjct: 520 FVGLPGKPGPKGEPGDPVPARGDPGIQGIKG-EKGEPCLSCSSVVGAQHLVSST---GAS 575
Query: 758 GPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGA----GHTGTSGDL 813
G G P P GR P G+ + E AGPAG+ G G +G
Sbjct: 576 GDVGSPGFGLPGLPGRAGVPGLKGEKGNFGE----------AGPAGSPGPPGPVGPAGIK 625
Query: 814 GSRGPSSESCNA 825
G++G E C A
Sbjct: 626 GAKGEPCEPCPA 637
Score = 33.1 bits (74), Expect = 1.6
Identities = 57/231 (24%), Positives = 81/231 (35%), Gaps = 47/231 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAP-IQGA--GDGALQRVAQAAELGRVLVPQAASE 654
G + G QGP G P G P P +QG +G + AELG + + Q +
Sbjct: 898 GSSWQPGPQGPPGIPGPPGP----PGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLK 953
Query: 655 ETPSTEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRG 710
G+ ++G+ G GE+G + P G +LE P+
Sbjct: 954 SIC------GDCVQGQRAHPGYLVEKGEKGDQGIP--GVPGLDNCAQCFLSLERPRAEEA 1005
Query: 711 LRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAA 770
++ G P SPG P G+R G GP G+ P
Sbjct: 1006 RGDNSE----------------GDPGCVGSPGLPGPPGLPGQR-GEEGPPGM--RGSPGP 1046
Query: 771 AGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGPSSE 821
G PP G + +P G+R G TG +GD G GP +
Sbjct: 1047 PGPIGPPGFPGAVGS--PGLPGLQGER-------GLTGLTGDKGEPGPPGQ 1088
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 50.4 bits (119), Expect = 1e-05
Identities = 69/238 (28%), Positives = 87/238 (36%), Gaps = 33/238 (13%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELG--RVLVPQAASEE 655
GP +GE+GP G P G++ + P P + GA G L P A E
Sbjct: 537 GPKGAQGERGPVGSSGPKGSQGD-PGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGE 595
Query: 656 TPSTEEPPGERLRGESRSSG-------SGERG-PEEAPEGGAAAARGQRPRVPALEPPQP 707
P +RG+ S G SG+ G P EA G RG + + P P
Sbjct: 596 DGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGP 655
Query: 708 --PRGL--RKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP 763
P GL +G Q P F +G P G P P EG + G G G P
Sbjct: 656 VGPPGLAGERGEQGPPGPTGF-------QGLP-------GPPGPPGEGGKPGDQGVPGDP 701
Query: 764 -RENPPAAAGRDAPPLHHGD--ASAWPEFVPQAAGDRTAGPAGA-GHTGTSGDLGSRG 817
P G P G+ + P A G GP G+ G +GT GD G G
Sbjct: 702 GAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPG 759
Score = 48.5 bits (114), Expect = 4e-05
Identities = 79/263 (30%), Positives = 92/263 (34%), Gaps = 52/263 (19%)
Query: 585 GLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECEL-PAAPIQGAG----------DGA 633
GL V GP +G+QG G P G + P PI G DG
Sbjct: 209 GLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGE 268
Query: 634 LQRVAQAAELGRVLVPQAASEETPSTEEPPG----------ERLRGESRSSGS-GERGPE 682
R E+G P A P PG E +GE + GS GE GP
Sbjct: 269 PGRNGNPGEVGFAGSPGARG--FPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGP- 325
Query: 683 EAPEG-----GAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLA 737
P G G G+R R+ PQ G R PGK + G P +
Sbjct: 326 TGPMGAMGPLGPRGMPGERGRL----GPQGAPGQRGAHGMPGKPGPMGPL-----GIPGS 376
Query: 738 TESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAG-D 796
+ PG P E G+ GPEG P G PP G +P A G D
Sbjct: 377 SGFPGN-PGMKGEAGPTGARGPEG-----PQGQRGETGPPGPVGSPG-----LPGAIGTD 425
Query: 797 RTAGPAG-AGHTGTSGDLGSRGP 818
T G G G GTSG GS GP
Sbjct: 426 GTPGAKGPTGSPGTSGPPGSAGP 448
Score = 47.8 bits (112), Expect = 6e-05
Identities = 65/231 (28%), Positives = 79/231 (34%), Gaps = 23/231 (9%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRV--LVPQAASEE 655
G E GEQGP G P G + LP P G + G V L P+
Sbjct: 660 GLAGERGEQGPPG---PTGFQ-GLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGN 715
Query: 656 TPSTEEPPGERLRGES-RSSGSGERGPEEAP-------EGGAAAARGQRPRVPALEPPQP 707
EP L GE + G G GP+ +P + G +G P +
Sbjct: 716 PGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGM-PGERGIAGTPG 774
Query: 708 PRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENP 767
P+G R G E G T + PL P G PT E G GP GL P
Sbjct: 775 PKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAG---PTGEK---GEPGPRGLV--GP 826
Query: 768 PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGP 818
P + G +G A PQ + G G GD GS GP
Sbjct: 827 PGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGP 877
Score = 47.8 bits (112), Expect = 6e-05
Identities = 73/252 (28%), Positives = 93/252 (36%), Gaps = 36/252 (14%)
Query: 580 EQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECEL----PAAPIQGAG----D 631
E+ + GL A T GP G++GP G P G+ + P P G D
Sbjct: 1003 ERGMPGLPG-PAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD 1061
Query: 632 GALQRVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-GERGPEEAPEGGAA 690
GA+ + G +P S+ P T P G G++ G G RGP P G A
Sbjct: 1062 GAVGERGDRGDPGPAGLP--GSQGAPGTPGPVG--APGDAGQRGDPGSRGPIGPP--GRA 1115
Query: 691 AARGQRPRVPALEPPQPPRGLRKGAQEPGKRPT-----FSKVTSF-RKGRPLATESPGGV 744
RG L PQ PRG + + G R F+ + P + G+
Sbjct: 1116 GKRG-------LPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGI 1168
Query: 745 PAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD-ASAWPEFVPQAAGDRTAGPAG 803
P P G GP G +E P G PP G A PE P G GP G
Sbjct: 1169 PGPFGPRGPPGPVGPSG--KEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPG--PPGPPG 1224
Query: 804 -AGH-TGTSGDL 813
GH T GD+
Sbjct: 1225 PPGHLTAALGDI 1236
Score = 47.0 bits (110), Expect = 1e-04
Identities = 64/241 (26%), Positives = 82/241 (34%), Gaps = 25/241 (10%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQ-------AAELGRVLVPQ 650
GP G+ GP G + G +G G ++ A+ A L L P
Sbjct: 747 GPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPP 806
Query: 651 AASEETPSTEEPPGERLRGESRSSGS-GERGPEEAPEGGAAAARGQRPR-VPAL--EPPQ 706
+ T EP L G S G+ G RG E P G A Q P P + EP +
Sbjct: 807 GPAGPTGEKGEPGPRGLVGPPGSRGNPGSRG-ENGPTGAVGFAGPQGPDGQPGVKGEPGE 865
Query: 707 PPRGLRKGAQEPGKRPTFSK--------VTSFRKGRPLATESPGGVPAPTTEGRRWGSSG 758
P G + A PG + V + GR T+ P G R G G
Sbjct: 866 P--GQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGR--GTQGPPGATGFPGSAGRVGPPG 921
Query: 759 PEGLPRE-NPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
P G P P G++ PP GD + + GP G G G G G
Sbjct: 922 PAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDG 981
Query: 818 P 818
P
Sbjct: 982 P 982
Score = 45.8 bits (107), Expect = 2e-04
Identities = 67/232 (28%), Positives = 82/232 (35%), Gaps = 30/232 (12%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGD-GALQRVAQAAELGRVLVP-QAAS 653
H G +GE G G K AG P P+ G G + LG P Q +
Sbjct: 304 HKGLEGPKGEVGAPGSKGEAG-----PTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGA 358
Query: 654 EETPSTEEPPGER-LRGESRSSGS----GERGPEEA--PEGGAAAARGQRPRVPALEPPQ 706
P P G + G S G+ GE GP A PEG RG+ + P
Sbjct: 359 HGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEG-PQGQRGETGPPGPVGSPG 417
Query: 707 PPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPREN 766
P + K PT S TS P + P G P P GS+GP+G+ R
Sbjct: 418 LPGAIGTDGTPGAKGPTGSPGTS----GPPGSAGPPGSPGPQ------GSTGPQGI-RGQ 466
Query: 767 PPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRGP 818
P G P G+A E P P G G GD G+ GP
Sbjct: 467 P----GDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGP 514
Score = 44.3 bits (103), Expect = 7e-04
Identities = 53/177 (29%), Positives = 67/177 (37%), Gaps = 26/177 (14%)
Query: 649 PQAASEET--PSTEEPPGERLRGESRSSGS-GERGPEEAPEGGAAAARGQRPRVPALEPP 705
PQ ET P PG L G + G+ G +GP +P P P +
Sbjct: 400 PQGQRGETGPPGPVGSPG--LPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGS 457
Query: 706 QPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLP-R 764
P+G+R +PG P F K + KG P P G+ P G GP G P
Sbjct: 458 TGPQGIRGQPGDPGV-PGF-KGEAGPKGEP----GPHGIQGPIGPPGEEGKRGPRGDPGT 511
Query: 765 ENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGA----GHTGTSGDLGSRG 817
PP G P + G +P D GP GA G G+SG GS+G
Sbjct: 512 VGPPGPVGERGAPGNRG----FP------GSDGLPGPKGAQGERGPVGSSGPKGSQG 558
Score = 42.7 bits (99), Expect = 0.002
Identities = 73/263 (27%), Positives = 87/263 (33%), Gaps = 46/263 (17%)
Query: 593 TVSHCGPGAEEGEQGPGGGKTPAGNECEL----PAAPIQGAG----------DGALQRVA 638
+V GP +G QG GG P G E P PI G DG R
Sbjct: 214 SVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNG 273
Query: 639 QAAELGRVLVPQAASEETPSTEEPPG----------ERLRGESRSSGS-GERGPEEAPEG 687
E+G P A P PG E +GE + GS GE GP P G
Sbjct: 274 NPGEVGFAGSPGARG--FPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPT-GPMG 330
Query: 688 -----GAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKV----TSFRKGRP--L 736
G G+R R+ PQ G R PGK + +S G P
Sbjct: 331 AMGPLGPRGMPGERGRLG----PQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMK 386
Query: 737 ATESPGGVPAPTTEGRRWGSSGPEGLPRENP--PAAAGRDAPPLHHGDASAWPEFVPQAA 794
P G P + G +GP G P +P P A G D P G + P +
Sbjct: 387 GEAGPTGARGPEGPQGQRGETGPPG-PVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGS 445
Query: 795 GDRTAGPAGAGHTGTSGDLGSRG 817
P G TG G G G
Sbjct: 446 AGPPGSPGPQGSTGPQGIRGQPG 468
Score = 42.4 bits (98), Expect = 0.003
Identities = 68/238 (28%), Positives = 83/238 (34%), Gaps = 50/238 (21%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G E+G+ GP G PAG + G + Q E G +P A TP
Sbjct: 969 GDPGEDGQPGPDGPPGPAGTTGQ----------RGIVGMPGQRGERGMPGLPGPAG--TP 1016
Query: 658 STEEPPGERLRGESRSSGSGERGP--EEAPEGGAAAARGQRPRVPALEPPQPPR----GL 711
P G +G++GP P G P PA P R G
Sbjct: 1017 GKVGPTG----------ATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGE 1066
Query: 712 RKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRW--GSSGPEGLPRENPPA 769
R +PG + G A +PG V AP G+R GS GP G PP
Sbjct: 1067 RGDRGDPG--------PAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIG-----PPG 1113
Query: 770 AAGRDAPPLHHGDASAWPEFVPQAAGDR-TAGPAG-AGHTGTSGDLGSRGPSSESCNA 825
AG+ P G P GDR G G G TG G G GP+ E +A
Sbjct: 1114 RAGKRGLPGPQG-----PRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSA 1166
Score = 41.2 bits (95), Expect = 0.006
Identities = 57/226 (25%), Positives = 75/226 (33%), Gaps = 55/226 (24%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP EEG++GP G G P P+ G + P
Sbjct: 495 GPPGEEGKRGPRGDPGTVG-----PPGPVGERG-------------------APGNRGFP 530
Query: 658 STEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQE 717
++ PG + GERGP + + RP P L G R
Sbjct: 531 GSDGLPGPK-------GAQGERGPVGSSGPKGSQGDPGRPGEPGLP------GARGLTGN 577
Query: 718 PGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPP 777
PG + K+ PL G P P G G GLP P ++G P
Sbjct: 578 PGVQGPEGKL------GPLGAPGEDGRPGPPGSIGIRGQPGSMGLP--GPKGSSGDPGKP 629
Query: 778 LHHGDASAWPEFVPQAAG----DRTAGPAG-AGHTGTSGDLGSRGP 818
G+A VP G D GP+G G G +G+ G +GP
Sbjct: 630 GEAGNAG-----VPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGP 670
Score = 38.9 bits (89), Expect = 0.029
Identities = 71/250 (28%), Positives = 84/250 (33%), Gaps = 43/250 (17%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP G QGP G + P G P P QG DG Q G P S P
Sbjct: 132 GPAGPPGSQGPRGERGPKGRPG--PRGP-QGI-DGEPGVPGQPGAPG---PPGHPSHPGP 184
Query: 658 -STEEPPGERLRGESRSSGSGER--------GP--EEAPEGGAAAARGQRPRVPALEP-- 704
P ++ G SG G + GP P+G G P P EP
Sbjct: 185 DGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGD 244
Query: 705 -----------PQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRR 753
P+ P G EPG+ +V G P A PG P +G R
Sbjct: 245 PGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGF--AGSPGARGFPGAPGLPGLKGHR 302
Query: 754 W--GSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQA-AGDR-TAGPAGA-GHTG 808
G GP+G P + G P G A P+ G+R GP GA G G
Sbjct: 303 GHKGLEGPKG--EVGAPGSKGEAGPT---GPMGAMGPLGPRGMPGERGRLGPQGAPGQRG 357
Query: 809 TSGDLGSRGP 818
G G GP
Sbjct: 358 AHGMPGKPGP 367
Score = 38.5 bits (88), Expect = 0.038
Identities = 52/178 (29%), Positives = 60/178 (33%), Gaps = 31/178 (17%)
Query: 657 PSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPP--QPPRGLRKG 714
P + PG G + + G G +G + P G G R R PP Q PRG R
Sbjct: 94 PVCSQTPG----GGNTNFGRGRKGQKGEP-GLVPVVTGIRGRPGPAGPPGSQGPRGERGP 148
Query: 715 AQEPGKR-PTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPAAAGR 773
PG R P G+P A PG P GP+GL R AG
Sbjct: 149 KGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP----------GPDGLSRPFSAQMAGL 198
Query: 774 DAPPLHHGDASAWPEFVP------------QAAGDRTAGPAGA-GHTGTSGDLGSRGP 818
D P V Q G GP G G G G +GSRGP
Sbjct: 199 DEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGP 256
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 446 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 500
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 501 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 553
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 554 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 613
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 614 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 666
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 667 -----------------GPPGDKGNRGERGKKGSRGPKGD 689
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 303 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 357
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 358 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 415
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 416 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 473
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 474 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 531
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 532 PGSPGEKGEKGETGQA 547
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 418 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 475
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 476 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 530
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 531 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 589
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 590 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 639
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 640 GPKGERGSKGDPGMTGPT 657
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 500 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 559
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 560 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 619
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 620 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 679
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 680 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 711
Score = 33.1 bits (74), Expect = 1.6
Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 21/104 (20%)
Query: 731 RKGRPLATESPG-----GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASA 785
R+ R SPG G P PT G G G+P GR P G +
Sbjct: 105 RRRREAPKTSPGCNCPPGPPGPTGRPGLPGDKGAIGMP--------GRVGSPGDAGLSII 156
Query: 786 WPEFVPQAAGDRT----AGPAGA----GHTGTSGDLGSRGPSSE 821
P P G R GP G GH G GD+G GP +
Sbjct: 157 GPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQ 200
Score = 32.3 bits (72), Expect = 2.7
Identities = 72/268 (26%), Positives = 88/268 (32%), Gaps = 62/268 (23%)
Query: 596 HCGPGAEEGEQGPGGGKTPAG-----NEC-ELPAAPIQGAGDGALQRVAQAAELGRVLVP 649
H GP + G GP G P G +C E P + AL R +Q L L+P
Sbjct: 185 HPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAAL-RSSQIIAL--KLLP 241
Query: 650 QAASEETPSTEEPPGERLRGE-SRSSGSGERGPEEAPEGGAAAARGQRP---RVPALEPP 705
S +GE S++S G GP P P P L P
Sbjct: 242 LLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP 301
Query: 706 QPPRG--------LRKGAQ----EPGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEG 751
P+G RKG + PGK KG P +A G P P T+G
Sbjct: 302 PGPKGDPGIQGYHGRKGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKG 353
Query: 752 RRWGSSGPEGLP---------------------RENPPAAAGRDAPPLHHG-DASAWPEF 789
+ G+ G GLP PP G P G D P
Sbjct: 354 EK-GAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPG 412
Query: 790 VPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
P G+R A AG G G GS+G
Sbjct: 413 QPGDKGERGA----AGEQGPDGPKGSKG 436
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 384 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 438
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 439 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 491
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 492 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 551
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 552 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 604
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 605 -----------------GPPGDKGNRGERGKKGSRGPKGD 627
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 241 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 295
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 296 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 353
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 354 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 411
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 412 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 469
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 470 PGSPGEKGEKGETGQA 485
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 356 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 413
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 414 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 468
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 469 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 527
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 528 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 577
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 578 GPKGERGSKGDPGMTGPT 595
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 438 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 497
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 498 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 557
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 558 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 617
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 618 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 649
Score = 37.0 bits (84), Expect = 0.11
Identities = 67/228 (29%), Positives = 80/228 (35%), Gaps = 36/228 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAG---NECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASE 654
GP + G QG G K G + E A IQG G + LG +P
Sbjct: 175 GPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGP-PGPPGPPGPSGPLGHPGLPGPMGP 233
Query: 655 ETPSTEEPPGERLRGESRSSG----SGERGPEEAP-EGGAAAARGQRPRVPALEPPQPPR 709
P PPG + G+ G GERG P + GA A G EP P
Sbjct: 234 --PGLPGPPGPK--GDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 289
Query: 710 GLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPA 769
KGA+ P + + + A S GG GR G GP GLP PP
Sbjct: 290 KGEKGAEGS---PGLPGLLGQKGEKGDAGNSIGG-------GR--GEPGPPGLP--GPPG 335
Query: 770 AAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
G D P P G+R A AG G G GS+G
Sbjct: 336 PKGEAGV-----DGQVGPPGQPGDKGERGA----AGEQGPDGPKGSKG 374
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 386 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 440
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 441 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 493
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 494 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 553
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 554 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 606
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 607 -----------------GPPGDKGNRGERGKKGSRGPKGD 629
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 243 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 297
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 298 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 355
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 356 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 413
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 414 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 471
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 472 PGSPGEKGEKGETGQA 487
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 358 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 415
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 416 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 470
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 471 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 529
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 530 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 579
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 580 GPKGERGSKGDPGMTGPT 597
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 440 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 499
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 500 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 559
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 560 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 619
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 620 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 651
Score = 36.6 bits (83), Expect = 0.15
Identities = 68/253 (26%), Positives = 84/253 (33%), Gaps = 54/253 (21%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGN-----EC-ELPAAPIQGAGDGALQRVAQAAELGRVLVP 649
H GP + G GP G P G +C E P + AL+ A G
Sbjct: 147 HPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQ--S 204
Query: 650 QAASEETPSTEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQRPRVPALEPPQPP 708
QA+ + P PPG G G G GP P G +G P ++
Sbjct: 205 QASIQGPPGPPGPPGPS--GPLGHPGLPGPMGPPGLP--GPPGPKGD----PGIQGYHGR 256
Query: 709 RGLRKGAQEPGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEGRRWGSSGPEGLP--- 763
+G R PGK KG P +A G P P T+G + G+ G GLP
Sbjct: 257 KGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKGEK-GAEGSPGLPGLL 307
Query: 764 ------------------RENPPAAAGRDAPPLHHG-DASAWPEFVPQAAGDRTAGPAGA 804
PP G P G D P P G+R A A
Sbjct: 308 GQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGA----A 363
Query: 805 GHTGTSGDLGSRG 817
G G G GS+G
Sbjct: 364 GEQGPDGPKGSKG 376
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 389 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 443
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 444 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 496
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 497 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 556
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 557 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 609
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 610 -----------------GPPGDKGNRGERGKKGSRGPKGD 632
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 246 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 300
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 301 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 358
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 359 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 416
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 417 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 474
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 475 PGSPGEKGEKGETGQA 490
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 361 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 418
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 419 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 473
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 474 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 532
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 533 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 582
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 583 GPKGERGSKGDPGMTGPT 600
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 443 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 502
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 503 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 562
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 563 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 622
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 623 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 654
Score = 33.9 bits (76), Expect = 0.94
Identities = 68/260 (26%), Positives = 82/260 (31%), Gaps = 57/260 (21%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP +G+ G G K G L P Q G Q E L+P S
Sbjct: 137 GPIGLDGKPGHPGPKGDMG----LTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLA 192
Query: 658 STEEPPGERLRGE-SRSSGSGERGPEEAPEGGAAAARGQRPRV---PALEPPQPPRGL-- 711
+GE S++S G GP P P P L P P+G
Sbjct: 193 PPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPG 252
Query: 712 ------RKGAQE----PGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEGRRWGSSGP 759
RKG + PGK KG P +A G P P T+G + G+ G
Sbjct: 253 IQGYHGRKGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKGEK-GAEGS 303
Query: 760 EGLP---------------------RENPPAAAGRDAPPLHHG-DASAWPEFVPQAAGDR 797
GLP PP G P G D P P G+R
Sbjct: 304 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 363
Query: 798 TAGPAGAGHTGTSGDLGSRG 817
A AG G G GS+G
Sbjct: 364 GA----AGEQGPDGPKGSKG 379
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 393 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 447
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 448 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 500
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 501 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 560
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 561 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 613
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 614 -----------------GPPGDKGNRGERGKKGSRGPKGD 636
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 250 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 304
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 305 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 362
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 363 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 420
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 421 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 478
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 479 PGSPGEKGEKGETGQA 494
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 365 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 422
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 423 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 477
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 478 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 536
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 537 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 586
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 587 GPKGERGSKGDPGMTGPT 604
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 447 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 506
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 507 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 566
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 567 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 626
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 627 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 658
Score = 37.0 bits (84), Expect = 0.11
Identities = 67/228 (29%), Positives = 80/228 (35%), Gaps = 36/228 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAG---NECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASE 654
GP + G QG G K G + E A IQG G + LG +P
Sbjct: 184 GPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGP-PGPPGPPGPSGPLGHPGLPGPMGP 242
Query: 655 ETPSTEEPPGERLRGESRSSG----SGERGPEEAP-EGGAAAARGQRPRVPALEPPQPPR 709
P PPG + G+ G GERG P + GA A G EP P
Sbjct: 243 --PGLPGPPGPK--GDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 298
Query: 710 GLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPA 769
KGA+ P + + + A S GG GR G GP GLP PP
Sbjct: 299 KGEKGAEGS---PGLPGLLGQKGEKGDAGNSIGG-------GR--GEPGPPGLP--GPPG 344
Query: 770 AAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
G D P P G+R A AG G G GS+G
Sbjct: 345 PKGEAGV-----DGQVGPPGQPGDKGERGA----AGEQGPDGPKGSKG 383
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 405 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 459
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 460 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 512
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 513 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 572
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 573 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 625
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 626 -----------------GPPGDKGNRGERGKKGSRGPKGD 648
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 262 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 316
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 317 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 374
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 375 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 432
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 433 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 490
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 491 PGSPGEKGEKGETGQA 506
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 377 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 434
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 435 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 489
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 490 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 548
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 549 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 598
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 599 GPKGERGSKGDPGMTGPT 616
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 459 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 518
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 519 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 578
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 579 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 638
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 639 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 670
Score = 37.0 bits (84), Expect = 0.11
Identities = 67/228 (29%), Positives = 80/228 (35%), Gaps = 36/228 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAG---NECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASE 654
GP + G QG G K G + E A IQG G + LG +P
Sbjct: 196 GPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGP-PGPPGPPGPSGPLGHPGLPGPMGP 254
Query: 655 ETPSTEEPPGERLRGESRSSG----SGERGPEEAP-EGGAAAARGQRPRVPALEPPQPPR 709
P PPG + G+ G GERG P + GA A G EP P
Sbjct: 255 --PGLPGPPGPK--GDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGT 310
Query: 710 GLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRENPPA 769
KGA+ P + + + A S GG GR G GP GLP PP
Sbjct: 311 KGEKGAEGS---PGLPGLLGQKGEKGDAGNSIGG-------GR--GEPGPPGLP--GPPG 356
Query: 770 AAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
G D P P G+R A AG G G GS+G
Sbjct: 357 PKGEAGV-----DGQVGPPGQPGDKGERGA----AGEQGPDGPKGSKG 395
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 417 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 471
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 472 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 524
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 525 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 584
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 585 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 637
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 638 -----------------GPPGDKGNRGERGKKGSRGPKGD 660
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 274 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 328
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 329 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 386
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 387 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 444
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 445 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 502
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 503 PGSPGEKGEKGETGQA 518
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 389 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 446
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 447 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 501
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 502 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 560
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 561 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 610
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 611 GPKGERGSKGDPGMTGPT 628
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 471 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 530
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 531 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 590
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 591 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 650
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 651 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 682
Score = 32.3 bits (72), Expect = 2.7
Identities = 72/268 (26%), Positives = 88/268 (32%), Gaps = 62/268 (23%)
Query: 596 HCGPGAEEGEQGPGGGKTPAG-----NEC-ELPAAPIQGAGDGALQRVAQAAELGRVLVP 649
H GP + G GP G P G +C E P + AL R +Q L L+P
Sbjct: 156 HPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAAL-RSSQIIAL--KLLP 212
Query: 650 QAASEETPSTEEPPGERLRGE-SRSSGSGERGPEEAPEGGAAAARGQRP---RVPALEPP 705
S +GE S++S G GP P P P L P
Sbjct: 213 LLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP 272
Query: 706 QPPRG--------LRKGAQ----EPGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEG 751
P+G RKG + PGK KG P +A G P P T+G
Sbjct: 273 PGPKGDPGIQGYHGRKGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKG 324
Query: 752 RRWGSSGPEGLP---------------------RENPPAAAGRDAPPLHHG-DASAWPEF 789
+ G+ G GLP PP G P G D P
Sbjct: 325 EK-GAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPG 383
Query: 790 VPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
P G+R A AG G G GS+G
Sbjct: 384 QPGDKGERGA----AGEQGPDGPKGSKG 407
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 50.4 bits (119), Expect = 1e-05
Identities = 77/269 (28%), Positives = 99/269 (36%), Gaps = 65/269 (24%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 446 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 500
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-GERGPEEAPEGGAAAARG 694
+ ++G + P + PPG ++GE+ GS GE+G + G A
Sbjct: 501 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEK----GETGQAGS 549
Query: 695 QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTFSKVTSFRKGRP 735
P +P E P P GL+ KG Q E G R P S GRP
Sbjct: 550 PVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP 609
Query: 736 LATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQA 793
+PG GVP P GS G G+ P AAG P LH
Sbjct: 610 GPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH-------------- 651
Query: 794 AGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 652 ------GPPGDKGNRGERGKKGSRGPKGD 674
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 303 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 357
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 358 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 415
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 416 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 473
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 474 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 531
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 532 PGSPGEKGEKGETGQA 547
Score = 48.1 bits (113), Expect = 5e-05
Identities = 68/242 (28%), Positives = 86/242 (35%), Gaps = 37/242 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 418 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 475
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 476 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 530
Query: 714 GAQEP---GKRPTFSKVTSFRKGRPLATESPG-----GVPAPTTEGRRWGSSGPEGLPRE 765
P G++ + S G P PG GVP P E G+ G +G E
Sbjct: 531 HPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGE 590
Query: 766 NP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRG 817
P A+G D P P P G GPAG G G+ GD G G
Sbjct: 591 KGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPAGPKGERGSKGDPGMTG 640
Query: 818 PS 819
P+
Sbjct: 641 PT 642
Score = 41.6 bits (96), Expect = 0.005
Identities = 49/202 (24%), Positives = 70/202 (34%), Gaps = 26/202 (12%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP + G+ GP G + P G + P + G+ + E G+ P P
Sbjct: 500 GPRGKPGDMGPPGPQGPPGKDGP-PGVKGENGHPGSPGEKGEKGETGQAGSPVPG---LP 555
Query: 658 STEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGAAAARGQRPRVP 700
E PPG + +GE G G+RGP P R P P
Sbjct: 556 GPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTP 615
Query: 701 A---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGS 756
+ P P+G R +PG PT + G P + G + G + G
Sbjct: 616 GPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPK-GD 674
Query: 757 SGPEGLPRENPPAAAGRDAPPL 778
G +G P + P G D P+
Sbjct: 675 KGDQGAPGLDAPCPLGEDGLPV 696
Score = 32.3 bits (72), Expect = 2.7
Identities = 72/268 (26%), Positives = 88/268 (32%), Gaps = 62/268 (23%)
Query: 596 HCGPGAEEGEQGPGGGKTPAG-----NEC-ELPAAPIQGAGDGALQRVAQAAELGRVLVP 649
H GP + G GP G P G +C E P + AL R +Q L L+P
Sbjct: 185 HPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAAL-RSSQIIAL--KLLP 241
Query: 650 QAASEETPSTEEPPGERLRGE-SRSSGSGERGPEEAPEGGAAAARGQRP---RVPALEPP 705
S +GE S++S G GP P P P L P
Sbjct: 242 LLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP 301
Query: 706 QPPRG--------LRKGAQ----EPGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEG 751
P+G RKG + PGK KG P +A G P P T+G
Sbjct: 302 PGPKGDPGIQGYHGRKGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKG 353
Query: 752 RRWGSSGPEGLP---------------------RENPPAAAGRDAPPLHHG-DASAWPEF 789
+ G+ G GLP PP G P G D P
Sbjct: 354 EK-GAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPG 412
Query: 790 VPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
P G+R A AG G G GS+G
Sbjct: 413 QPGDKGERGA----AGEQGPDGPKGSKG 436
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 424 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 478
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 479 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 531
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 532 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 591
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 592 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 644
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 645 -----------------GPPGDKGNRGERGKKGSRGPKGD 667
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 281 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 335
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 336 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 393
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 394 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 451
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 452 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 509
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 510 PGSPGEKGEKGETGQA 525
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 396 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 453
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 454 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 508
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 509 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 567
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 568 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 617
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 618 GPKGERGSKGDPGMTGPT 635
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 478 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 537
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 538 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 597
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 598 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 657
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 658 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 689
Score = 36.6 bits (83), Expect = 0.15
Identities = 68/253 (26%), Positives = 84/253 (33%), Gaps = 54/253 (21%)
Query: 596 HCGPGAEEGEQGPGGGKTPAGN-----EC-ELPAAPIQGAGDGALQRVAQAAELGRVLVP 649
H GP + G GP G P G +C E P + AL+ A G
Sbjct: 185 HPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQ--S 242
Query: 650 QAASEETPSTEEPPGERLRGESRSSG-SGERGPEEAPEGGAAAARGQRPRVPALEPPQPP 708
QA+ + P PPG G G G GP P G +G P ++
Sbjct: 243 QASIQGPPGPPGPPGPS--GPLGHPGLPGPMGPPGLP--GPPGPKGD----PGIQGYHGR 294
Query: 709 RGLRKGAQEPGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEGRRWGSSGPEGLP--- 763
+G R PGK KG P +A G P P T+G + G+ G GLP
Sbjct: 295 KGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKGEK-GAEGSPGLPGLL 345
Query: 764 ------------------RENPPAAAGRDAPPLHHG-DASAWPEFVPQAAGDRTAGPAGA 804
PP G P G D P P G+R A A
Sbjct: 346 GQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGA----A 401
Query: 805 GHTGTSGDLGSRG 817
G G G GS+G
Sbjct: 402 GEQGPDGPKGSKG 414
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 427 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 481
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 482 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 534
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 535 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 594
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 595 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 647
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 648 -----------------GPPGDKGNRGERGKKGSRGPKGD 670
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 284 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 338
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 339 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 396
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 397 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 454
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 455 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 512
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 513 PGSPGEKGEKGETGQA 528
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 399 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 456
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 457 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 511
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 512 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 570
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 571 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 620
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 621 GPKGERGSKGDPGMTGPT 638
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 481 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 540
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 541 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 600
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 601 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 660
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 661 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 692
Score = 33.9 bits (76), Expect = 0.94
Identities = 68/260 (26%), Positives = 82/260 (31%), Gaps = 57/260 (21%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
GP +G+ G G K G L P Q G Q E L+P S
Sbjct: 175 GPIGLDGKPGHPGPKGDMG----LTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLA 230
Query: 658 STEEPPGERLRGE-SRSSGSGERGPEEAPEGGAAAARGQRPRV---PALEPPQPPRGL-- 711
+GE S++S G GP P P P L P P+G
Sbjct: 231 PPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPG 290
Query: 712 ------RKGAQE----PGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEGRRWGSSGP 759
RKG + PGK KG P +A G P P T+G + G+ G
Sbjct: 291 IQGYHGRKGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKGEK-GAEGS 341
Query: 760 EGLP---------------------RENPPAAAGRDAPPLHHG-DASAWPEFVPQAAGDR 797
GLP PP G P G D P P G+R
Sbjct: 342 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 401
Query: 798 TAGPAGAGHTGTSGDLGSRG 817
A AG G G GS+G
Sbjct: 402 GA----AGEQGPDGPKGSKG 417
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 50.4 bits (119), Expect = 1e-05
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 72/280 (25%)
Query: 578 YREQALQGLSEFKAATVSHCGPGAEEGEQGPGGGKTPAGNECE--LPAAPIQGAGDGALQ 635
Y + L E + T++ GP G+ GP G G + E LP P DG
Sbjct: 429 YNGNINEALQEIR--TLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPP---GHDGEKG 483
Query: 636 RVAQAAELGRVLVPQAASEETPSTEEPPGERLRGESRSSGS-------GERGPEEAP-EG 687
+ ++G + P + PPG ++GE+ GS GE G +P E
Sbjct: 484 PRGKPGDMG-----PPGPQGPPGKDGPPG--VKGENGHPGSPGEKGEKGETGQAGSPGEK 536
Query: 688 GAAAARG----QRPRVPALEPPQPPRGLR-----------------KGAQ-EPGKR-PTF 724
G A +G + P +P E P P GL+ KG Q E G R P
Sbjct: 537 GEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLG 596
Query: 725 SKVTSFRKGRPLATESPG--GVPAPTTEGRRWGSSGPEGLPRENPPAAAGRDAPPLHHGD 782
S GRP +PG GVP P GS G G+ P AAG P LH
Sbjct: 597 LPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMT--GPTGAAG--LPGLH--- 649
Query: 783 ASAWPEFVPQAAGDRTAGPAG-AGHTGTSGDLGSRGPSSE 821
GP G G+ G G GSRGP +
Sbjct: 650 -----------------GPPGDKGNRGERGKKGSRGPKGD 672
Score = 48.5 bits (114), Expect = 4e-05
Identities = 69/256 (26%), Positives = 92/256 (35%), Gaps = 42/256 (16%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEE-- 655
GP + G QG G K G +P P + GA +A A G +P E+
Sbjct: 286 GPKGDPGIQGYHGRKGERG----MPGMPGKHGAKGA-PGIAVAGMKGEPGIPGTKGEKGA 340
Query: 656 -----TPSTEEPPGERL-RGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPP- 708
P GE+ G S G GE GP P G +G+ + PP P
Sbjct: 341 EGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLP--GPPGPKGEAGVDGQVGPPGQPG 398
Query: 709 -RGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRRWGSSGPEGLPRE-N 766
+G R A E G P K + G+ + G + E R GP GLP +
Sbjct: 399 DKGERGAAGEQG--PDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG 456
Query: 767 PPAA---------AGRDAPPLHHGDASAWPEFVPQAAG-DRTAGPAGA----------GH 806
PP A G PP H G+ P P G GP G GH
Sbjct: 457 PPGAPGIPGQKGEIGLPGPPGHDGEKG--PRGKPGDMGPPGPQGPPGKDGPPGVKGENGH 514
Query: 807 TGTSGDLGSRGPSSES 822
G+ G+ G +G + ++
Sbjct: 515 PGSPGEKGEKGETGQA 530
Score = 46.2 bits (108), Expect = 2e-04
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 54/258 (20%)
Query: 598 GPGAEEGEQGPGGGKTPAGNECELPAAPIQGAGDGALQRVAQAAELGRVLVPQAASEETP 657
G GEQGP G K G + G + ALQ + A +G +P P
Sbjct: 401 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIG--PP 458
Query: 658 STEEPPGERLRGESRSSG----SGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRK 713
PG+ +GE G GE+GP P G Q P P + P +G
Sbjct: 459 GAPGIPGQ--KGEIGLPGPPGHDGEKGPRGKP-GDMGPPGPQGP--PGKDGPPGVKGENG 513
Query: 714 GAQEPGKR----------PTFSKVTSFRKGRPLATESPG--------------GVPAPTT 749
PG++ K + KG P E PG GVP P
Sbjct: 514 HPGSPGEKGEKGETGQAGSPGEKGEAGEKGNP-GAEVPGLPGPEGPPGPPGLQGVPGPKG 572
Query: 750 EGRRWGSSGPEGLPRENP-------PAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPA 802
E G+ G +G E P A+G D P P P G GPA
Sbjct: 573 EAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP--------GPPGTPGPIG--VPGPA 622
Query: 803 G-AGHTGTSGDLGSRGPS 819
G G G+ GD G GP+
Sbjct: 623 GPKGERGSKGDPGMTGPT 640
Score = 40.4 bits (93), Expect = 0.010
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 598 GPGAEEGEQGPGGGKTPAGN--------ECELPAAPIQGAGDGALQRVAQAAELGRVLV- 648
GP + G+ GP G + P G E P +P + G + E G
Sbjct: 483 GPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEK 542
Query: 649 --PQAASEETPSTEEPPG----------------ERLRGESRSSGS-GERGPEEAPEGGA 689
P A P E PPG + +GE G G+RGP P
Sbjct: 543 GNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASG 602
Query: 690 AAARGQRPRVPA---LEPPQPPRGLRKGAQEPGKR-PTFSKVTSFRKGRPLATESPGGVP 745
R P P + P P+G R +PG PT + G P + G
Sbjct: 603 LDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERG 662
Query: 746 APTTEGRRWGSSGPEGLPRENPPAAAGRDAPPL 778
+ G + G G +G P + P G D P+
Sbjct: 663 KKGSRGPK-GDKGDQGAPGLDAPCPLGEDGLPV 694
Score = 32.3 bits (72), Expect = 2.7
Identities = 72/268 (26%), Positives = 88/268 (32%), Gaps = 62/268 (23%)
Query: 596 HCGPGAEEGEQGPGGGKTPAG-----NEC-ELPAAPIQGAGDGALQRVAQAAELGRVLVP 649
H GP + G GP G P G +C E P + AL R +Q L L+P
Sbjct: 168 HPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAAL-RSSQIIAL--KLLP 224
Query: 650 QAASEETPSTEEPPGERLRGE-SRSSGSGERGPEEAPEGGAAAARGQRP---RVPALEPP 705
S +GE S++S G GP P P P L P
Sbjct: 225 LLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP 284
Query: 706 QPPRG--------LRKGAQ----EPGKRPTFSKVTSFRKGRP-LATESPGGVPA-PTTEG 751
P+G RKG + PGK KG P +A G P P T+G
Sbjct: 285 PGPKGDPGIQGYHGRKGERGMPGMPGKHGA--------KGAPGIAVAGMKGEPGIPGTKG 336
Query: 752 RRWGSSGPEGLP---------------------RENPPAAAGRDAPPLHHG-DASAWPEF 789
+ G+ G GLP PP G P G D P
Sbjct: 337 EK-GAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPG 395
Query: 790 VPQAAGDRTAGPAGAGHTGTSGDLGSRG 817
P G+R A AG G G GS+G
Sbjct: 396 QPGDKGERGA----AGEQGPDGPKGSKG 419
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,729,440
Number of Sequences: 37866
Number of extensions: 3562863
Number of successful extensions: 18488
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1004
Number of HSP's that attempted gapping in prelim test: 14284
Number of HSP's gapped (non-prelim): 4146
length of query: 1183
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1070
effective length of database: 13,968,660
effective search space: 14946466200
effective search space used: 14946466200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.