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Search of human proteins with 239752937
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752937 PREDICTED: hypothetical protein [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752937 PREDICTED: hypothetical protein [Homo sapiens] 208 6e-55
gi|239747481 PREDICTED: hypothetical protein XP_002347535 [Homo ... 208 6e-55
gi|239741353 PREDICTED: hypothetical protein XP_002342204 [Homo ... 208 6e-55
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 32 0.083
gi|24497531 Ellis van Creveld syndrome protein [Homo sapiens] 32 0.14
gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] 30 0.41
gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens] 30 0.41
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 30 0.54
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 29 0.70
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 28 1.6
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 28 1.6
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239752453 PREDICTED: hypothetical protein XP_002348279 [Homo ... 28 1.6
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 28 1.6
gi|239746978 PREDICTED: hypothetical protein XP_002343901 [Homo ... 28 1.6
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 28 1.6
gi|189571647 hypothetical protein LOC79684 [Homo sapiens] 28 1.6
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 28 1.6
gi|9789865 eukaryotic translation initiation factor 4E nuclear i... 28 2.0
gi|239757786 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239753561 PREDICTED: hypothetical protein XP_002345697 [Homo ... 27 2.7
gi|239752679 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239748101 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239747216 PREDICTED: hypothetical protein XP_002346941 [Homo ... 27 2.7
gi|239741024 PREDICTED: hypothetical protein XP_002342070 [Homo ... 27 2.7
>gi|239752937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 208 bits (530), Expect = 6e-55
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP 60
MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP
Sbjct: 1 MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP 60
Query: 61 AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK 101
AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK
Sbjct: 61 AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK 101
>gi|239747481 PREDICTED: hypothetical protein XP_002347535 [Homo
sapiens]
Length = 101
Score = 208 bits (530), Expect = 6e-55
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP 60
MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP
Sbjct: 1 MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP 60
Query: 61 AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK 101
AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK
Sbjct: 61 AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK 101
>gi|239741353 PREDICTED: hypothetical protein XP_002342204 [Homo
sapiens]
Length = 101
Score = 208 bits (530), Expect = 6e-55
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP 60
MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP
Sbjct: 1 MRVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRP 60
Query: 61 AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK 101
AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK
Sbjct: 61 AGSRLAPGRRGDLGRALSDLGIWVGWCRCGAPANTELLPVK 101
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 32.3 bits (72), Expect = 0.083
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 2 RVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSR--KGRGARVEGQRLLGVGVR- 58
R G++ LA R +AGR AAL Q R +G GAR +R LG G R
Sbjct: 172 RGGNAAAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRLGAGERP 231
Query: 59 --RPAGSRLAPGR 69
RP G AP R
Sbjct: 232 APRPRGPPRAPAR 244
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 32.3 bits (72), Expect = 0.083
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 2 RVGDSGVELACAPLRVARRWDGVSMAGRLAALPAGQGSR--KGRGARVEGQRLLGVGVR- 58
R G++ LA R +AGR AAL Q R +G GAR +R LG G R
Sbjct: 172 RGGNAAAALAARQAAGGGRSRSAFVAGRDAALACAQLPRRPRGAGARRGMRRRLGAGERP 231
Query: 59 --RPAGSRLAPGR 69
RP G AP R
Sbjct: 232 APRPRGPPRAPAR 244
>gi|24497531 Ellis van Creveld syndrome protein [Homo sapiens]
Length = 992
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 39 SRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDLGRALS-DLGIWVGWCRCG 90
+R G + + + LLG RPA + LAP LG AL LG+W+G CR G
Sbjct: 2 ARGGAACKSDARLLLGRDALRPAPALLAPAVL--LGAALGLGLGLWLG-CRAG 51
>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 32 ALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPG 68
A PAG+G R G R R G G+ R G R+ PG
Sbjct: 63 APPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPG 99
>gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 32 ALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPG 68
A PAG+G R G R R G G+ R G R+ PG
Sbjct: 63 APPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVGPG 99
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 34 PAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDLGRALSDLG 81
PA +G + R E L G G R APGRRG GRA + G
Sbjct: 147 PAQEGGGRRPSRREEAAALAG------GGKRTAPGRRGRGGRAAAGQG 188
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 35 AGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDLGRALSDLG 81
A +GS +GRG+R G+ G G R GSR RG GR +G
Sbjct: 230 AKEGSSRGRGSRGRGRGYRGRGSR--GGSRGRGMGRGSRGRGRGSMG 274
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 28 GRLAALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDL 73
G A G G G G R QR G G RRP G+ + G G+L
Sbjct: 30 GGEGAAAGGGGGGLGSGGR-SAQRRAGAGARRPIGAAPSVGPGGEL 74
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 28 GRLAALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDL 73
G A G G G G R QR G G RRP G+ + G G+L
Sbjct: 30 GGEGAAAGGGGGGLGSGGR-SAQRRAGAGARRPIGAAPSVGPGGEL 74
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 28 GRLAALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDL 73
G A G G G G R QR G G RRP G+ + G G+L
Sbjct: 30 GGEGAAAGGGGGGLGSGGR-SAQRRAGAGARRPIGAAPSVGPGGEL 74
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 25 SMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRPAGS 63
S GR P G G GRG R G + V +RR G+
Sbjct: 15 SARGRFPGRPRGAGGGGGRGGRGNGAERVRVALRRGGGA 53
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 34 PAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDLGR 75
PAG+ + RGAR E GVG P G R APG RG G+
Sbjct: 484 PAGEEGK--RGARGEPG---GVGPIGPPGERGAPGNRGFPGQ 520
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 34 PAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDLGR 75
PAG+ + RGAR E GVG P G R APG RG G+
Sbjct: 415 PAGEEGK--RGARGEPG---GVGPIGPPGERGAPGNRGFPGQ 451
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 13 APLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVR----RPAGSRLAPG 68
A LR A + G S +G L +G R+ V G+RL G G R R G R+A
Sbjct: 585 AALRRAAQGAG-SASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVA-- 641
Query: 69 RRGDLGRAL 77
+RG L L
Sbjct: 642 QRGQLAHVL 650
>gi|239752453 PREDICTED: hypothetical protein XP_002348279 [Homo
sapiens]
Length = 103
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 15 LRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRL-------LGVGVR------RPA 61
LR+ W + G+L L +G RGA + G R+ LG R PA
Sbjct: 17 LRLPHSWAQTWLVGQLGKLFSGHSLPDARGASI-GSRIPAEPGPDLGASWRLRFPASLPA 75
Query: 62 GSRLAPGRRG 71
S APGRRG
Sbjct: 76 FSNPAPGRRG 85
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 13 APLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVR----RPAGSRLAPG 68
A LR A + G S +G L +G R+ V G+RL G G R R G R+A
Sbjct: 539 AALRRAAQGAG-SASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVGTWRRGGGRVA-- 595
Query: 69 RRGDLGRAL 77
+RG L L
Sbjct: 596 QRGQLAHVL 604
>gi|239746978 PREDICTED: hypothetical protein XP_002343901 [Homo
sapiens]
Length = 103
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 15 LRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRL-------LGVGVR------RPA 61
LR+ W + G+L L +G RGA + G R+ LG R PA
Sbjct: 17 LRLPHSWAQTWLVGQLGKLFSGHSLPDARGASI-GSRIPAEPGPDLGASWRLRFPASLPA 75
Query: 62 GSRLAPGRRG 71
S APGRRG
Sbjct: 76 FSNPAPGRRG 85
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 13 APLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVR----RPAGSRLAPG 68
A LR A + G S +G L +G R+ V G+RL G G R R G R+A
Sbjct: 539 AALRRAAQGAG-SASGLLGGAVGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVA-- 595
Query: 69 RRGDLGRAL 77
+RG L L
Sbjct: 596 QRGQLAHVL 604
>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
Length = 507
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 32 ALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRL--APGRRG 71
A P G GS G GA G LG+G R A S + +PG G
Sbjct: 47 ASPLGPGSAAGSGAAASGGLGLGLGGRSAASSSVSFSPGGGG 88
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 34 PAGQGS---RKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDLGRALSDLGIWVG----- 85
P G G+ +KG A EGQ V+R +R+APG G + LS +W
Sbjct: 759 PKGTGATCGKKGSQAGAEGQPST---VKRYTPARIAPGLPGCQTKELS---LWKPTGPAN 812
Query: 86 -WCRC---GAPANTELLPV 100
+ RC G P +T++LPV
Sbjct: 813 IYPRCSVNGKPTSTQVLPV 831
>gi|9789865 eukaryotic translation initiation factor 4E nuclear
import factor 1 [Homo sapiens]
Length = 985
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 50 QRLLGVGVRRPAGSRLAPGRRGDLGRALSDLG 81
Q LLG V+RPA S L G G L S LG
Sbjct: 528 QELLGQPVQRPASSNLLSGLMGSLEPTTSLLG 559
>gi|239757786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 23 GVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRPAGS--RLAPGRRGDLG 74
GV+ AG+ P SR+GRGA ++ G R+ GS R+ P + LG
Sbjct: 16 GVAAAGKQE--PGFIISRRGRGAGSSSNSVITHGKRKSKGSSKRIPPSKNASLG 67
>gi|239753561 PREDICTED: hypothetical protein XP_002345697 [Homo
sapiens]
Length = 267
Score = 27.3 bits (59), Expect = 2.7
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 14 PLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDL 73
P + R W GVS AA P R R G L ++ P R +PG RG +
Sbjct: 70 PFGLGRSWLGVSNRSSPAAEP--------RERRSRGLHFLLSRIKSP---RSSPGFRGPV 118
Query: 74 ----GRALSDLGIWVGWCRCGAPANTEL 97
RAL+ G W C P T+L
Sbjct: 119 FWVSERALATAGSW-----CPGPLLTQL 141
>gi|239752679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 27.3 bits (59), Expect = 2.7
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 6 SGVELA-CAPLRV--ARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQR------LLGVG 56
SGVE A PL+V A +G+ + G P G +GRG R EG+ LG
Sbjct: 83 SGVEAAETVPLQVPLAPPQEGLLLRG-----PTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
Query: 57 VRRPAGSRLAPGRRGDLG 74
G RL PG G G
Sbjct: 138 CLGHEGGRLVPGPVGPSG 155
>gi|239748101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 267
Score = 27.3 bits (59), Expect = 2.7
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 14 PLRVARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQRLLGVGVRRPAGSRLAPGRRGDL 73
P + R W GVS AA P R R G L ++ P R +PG RG +
Sbjct: 70 PFGLGRSWLGVSNRSSPAAEP--------RERRSRGLHFLLSRIKSP---RSSPGFRGPV 118
Query: 74 ----GRALSDLGIWVGWCRCGAPANTEL 97
RAL+ G W C P T+L
Sbjct: 119 FWVSERALATAGSW-----CPGPLLTQL 141
>gi|239747216 PREDICTED: hypothetical protein XP_002346941 [Homo
sapiens]
Length = 245
Score = 27.3 bits (59), Expect = 2.7
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 6 SGVELA-CAPLRV--ARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQR------LLGVG 56
SGVE A PL+V A +G+ + G P G +GRG R EG+ LG
Sbjct: 83 SGVEAAETVPLQVPLAPPQEGLLLRG-----PTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
Query: 57 VRRPAGSRLAPGRRGDLG 74
G RL PG G G
Sbjct: 138 CLGHEGGRLVPGPVGPSG 155
>gi|239741024 PREDICTED: hypothetical protein XP_002342070 [Homo
sapiens]
Length = 245
Score = 27.3 bits (59), Expect = 2.7
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 6 SGVELA-CAPLRV--ARRWDGVSMAGRLAALPAGQGSRKGRGARVEGQR------LLGVG 56
SGVE A PL+V A +G+ + G P G +GRG R EG+ LG
Sbjct: 83 SGVEAAETVPLQVPLAPPQEGLLLRG-----PTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
Query: 57 VRRPAGSRLAPGRRGDLG 74
G RL PG G G
Sbjct: 138 CLGHEGGRLVPGPVGPSG 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,177,602
Number of Sequences: 37866
Number of extensions: 198480
Number of successful extensions: 937
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 123
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.