Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290628 Sequence: fasta or formatted (101aa) NCBI GI: 239747481
Description:

PREDICTED: hypothetical protein XP_002347535

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         13           2
 C cysteine            3.0          3           1
 D aspartate           4.0          4           1
 E glutamate           3.0          3           1
 F phenylalanine       0.0          0           0
 G glycine            17.8         18           1
 H histidine           0.0          0           0
 I isoleucine          1.0          1           1
 K lysine              2.0          2           1
 L leucine            11.9         12           2
 M methionine          2.0          2           1
 N asparagine          1.0          1           1
 P proline             5.9          6           1
 Q glutamine           2.0          2           1
 R arginine           15.8         16           2
 S serine              5.0          5           1
 T threonine           1.0          1           1
 V valine              8.9          9           1
 W tryptophan          3.0          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347535 
LOC100292970          1.000   PREDICTED: hypothetical protein 
LOC100287276          1.000   PREDICTED: hypothetical protein XP_002342204 
LOC100287499          0.038   PREDICTED: hypothetical protein 
LOC100287499          0.038   PREDICTED: hypothetical protein XP_002343643 
EVC                   0.038   Ellis van Creveld syndrome protein 
LOC100130883          0.027   PREDICTED: similar to proline rich 20 
LOC100130883          0.027   PREDICTED: similar to proline rich 20 
LOC728650             0.027   PREDICTED: hypothetical protein 
ZC3H4                 0.027   zinc finger CCCH-type containing 4 
LOC339192             0.022   PREDICTED: hypothetical protein 
LOC339192             0.022   PREDICTED: hypothetical protein 
LOC339192             0.022   PREDICTED: hypothetical protein 
MLL4                  0.022   myeloid/lymphoid or mixed-lineage leukemia 4 
COL2A1                0.016   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.016   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100293513          0.016   PREDICTED: hypothetical protein 
LOC100289952          0.016   PREDICTED: hypothetical protein XP_002348279 
LOC100291129          0.016   PREDICTED: hypothetical protein XP_002347815 
LOC100287574          0.016   PREDICTED: hypothetical protein XP_002343901 
LOC100294343          0.016   PREDICTED: hypothetical protein XP_002344111 
C11orf61              0.016   hypothetical protein LOC79684 
BCORL1                0.016   BCL6 co-repressor-like 1 
EIF4ENIF1             0.016   eukaryotic translation initiation factor 4E nuclear i...
LOC100128332          0.011   PREDICTED: hypothetical protein 
LOC100291891          0.011   PREDICTED: hypothetical protein XP_002345697 
LOC100292291          0.011   PREDICTED: hypothetical protein 
LOC100287105          0.011   PREDICTED: hypothetical protein 
LOC100290604          0.011   PREDICTED: hypothetical protein XP_002346941 
LOC100287848          0.011   PREDICTED: hypothetical protein XP_002342070 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press