Guide to the Human Genome
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Name: LOC100289952 Sequence: fasta or formatted (103aa) NCBI GI: 239752453
Description:

PREDICTED: hypothetical protein XP_002348279

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         10           1
 C cysteine            2.9          3           2
 D aspartate           3.9          4           1
 E glutamate           1.0          1           1
 F phenylalanine       2.9          3           1
 G glycine            14.6         15           1
 H histidine           2.9          3           1
 I isoleucine          1.9          2           1
 K lysine              2.9          3           1
 L leucine            11.7         12           1
 M methionine          1.0          1           1
 N asparagine          1.0          1           1
 P proline            12.6         13           1
 Q glutamine           1.9          2           1
 R arginine            9.7         10           2
 S serine             10.7         11           1
 T threonine           3.9          4           1
 V valine              1.0          1           1
 W tryptophan          2.9          3           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348279 
LOC100287574          1.000   PREDICTED: hypothetical protein XP_002343901 
COL4A2                0.051   alpha 2 type IV collagen preproprotein 
LOC100288294          0.030   PREDICTED: hypothetical protein 
LOC100288294          0.030   PREDICTED: hypothetical protein XP_002342927 
RTN2                  0.030   reticulon 2 isoform A 
RTN2                  0.030   reticulon 2 isoform B 
COL2A1                0.030   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.030   collagen, type II, alpha 1 isoform 2 precursor [Hom...
RLTPR                 0.030   RGD motif, leucine rich repeats, tropomodulin domain...
DIRC2                 0.030   disrupted in renal carcinoma 2 
ADAM19                0.025   ADAM metallopeptidase domain 19 preproprotein 
LOC100290263          0.020   PREDICTED: hypothetical protein XP_002347916 
NKX1-1                0.020   PREDICTED: NK1 homeobox 1 
SHC1                  0.020   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.020   SHC (Src homology 2 domain containing) transforming...
RBMY1E                0.020   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1B                0.020   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.020   RNA binding motif protein, Y-linked, family 1, membe...
FAM148C               0.015   nuclear localized factor 3 
LOC100292970          0.015   PREDICTED: hypothetical protein 
LOC100290628          0.015   PREDICTED: hypothetical protein XP_002347535 
LOC100287276          0.015   PREDICTED: hypothetical protein XP_002342204 
SHANK3                0.015   SH3 and multiple ankyrin repeat domains 3 
PHRF1                 0.015   PHD and ring finger domains 1 
LSM11                 0.015   LSM11, U7 small nuclear RNA associated 
LOC645249             0.015   PREDICTED: hypothetical protein 
MUC3B                 0.015   PREDICTED: mucin 3B, partial 
LOC100130360          0.015   PREDICTED: hypothetical protein 
MUC3A                 0.015   PREDICTED: mucin 3A, intestinal 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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