Guide to the Human Genome
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Name: LOC100130883 Sequence: fasta or formatted (210aa) NCBI GI: 169166067
Description:

PREDICTED: similar to proline rich 20

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} PREDICTED: similar to proline rich 20
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         23           2
 C cysteine            0.5          1           1
 D aspartate           1.9          4           1
 E glutamate           5.7         12           2
 F phenylalanine       2.4          5           1
 G glycine            12.9         27           3
 H histidine           2.9          6           1
 I isoleucine          1.4          3           1
 K lysine              1.4          3           1
 L leucine             6.2         13           2
 M methionine          2.4          5           1
 N asparagine          1.4          3           1
 P proline            15.7         33           3
 Q glutamine           6.2         13           1
 R arginine            8.6         18           2
 S serine              7.1         15           2
 T threonine           3.8          8           1
 V valine              6.7         14           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to proline rich 20 
LOC100130883          1.000   PREDICTED: similar to proline rich 20 
LOC729240             0.472   PREDICTED: FLJ40296 protein family member 
PRR20                 0.472   proline rich 20 
LOC729250             0.472   hypothetical protein LOC729250 
LOC729246             0.472   hypothetical protein LOC729246 
LOC729240             0.472   hypothetical protein LOC729240 
LOC729233             0.472   hypothetical protein LOC729233 
TAF4                  0.056   TBP-associated factor 4 
LOC283999             0.041   hypothetical protein LOC283999 
COL4A3                0.041   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.041   alpha 3 type IV collagen isoform 1 precursor 
LMTK3                 0.039   lemur tyrosine kinase 3 
COL5A3                0.039   collagen, type V, alpha 3 preproprotein 
RBMXL2                0.039   testes-specific heterogenous nuclear ribonucleoprot...
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.036   alpha 1 type VII collagen precursor 
ARID1A                0.036   AT rich interactive domain 1A isoform a 
ARID1A                0.036   AT rich interactive domain 1A isoform b 
C9orf75               0.036   hypothetical protein LOC286262 isoform 2 
C9orf75               0.036   hypothetical protein LOC286262 isoform 1 
LOC100293055          0.036   PREDICTED: similar to COL22A1 protein 
LOC100131455          0.036   PREDICTED: hypothetical protein 
LOC100131455          0.036   PREDICTED: hypothetical protein 
PRRT1                 0.036   NG5 protein 
COL22A1               0.036   collagen, type XXII, alpha 1 
CSF2RB                0.036   colony stimulating factor 2 receptor, beta precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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