Guide to the Human Genome
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Name: LOC100287105 Sequence: fasta or formatted (267aa) NCBI GI: 239748101
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {268aa} PREDICTED: hypothetical protein XP_002342369
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         24           2
 C cysteine            2.2          6           1
 D aspartate           2.2          6           1
 E glutamate           4.5         12           1
 F phenylalanine       3.7         10           1
 G glycine             9.7         26           2
 H histidine           2.6          7           1
 I isoleucine          1.9          5           1
 K lysine              3.7         10           1
 L leucine            10.1         27           2
 M methionine          0.4          1           1
 N asparagine          3.0          8           1
 P proline            10.9         29           1
 Q glutamine           3.4          9           1
 R arginine           10.5         28           2
 S serine             10.5         28           2
 T threonine           5.6         15           2
 V valine              3.0          8           2
 W tryptophan          2.2          6           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291891          1.000   PREDICTED: hypothetical protein XP_002345697 
LOC100287105          0.942   PREDICTED: hypothetical protein XP_002342369 
SAMD11                0.019   sterile alpha motif domain containing 11 
LOC100292793          0.017   PREDICTED: hypothetical protein 
LOC100128703          0.017   PREDICTED: hypothetical protein 
LOC100290071          0.017   PREDICTED: hypothetical protein XP_002347957 
LOC100287600          0.017   PREDICTED: hypothetical protein XP_002343679 
ZNF828                0.015   zinc finger protein 828 
LOC100293121          0.013   PREDICTED: hypothetical protein 
LOC100129697          0.013   PREDICTED: hypothetical protein 
LOC100292568          0.013   PREDICTED: hypothetical protein 
LOC100291146          0.013   PREDICTED: hypothetical protein XP_002346600 
LOC100128703          0.013   PREDICTED: hypothetical protein LOC100128703 
LOC100289534          0.013   PREDICTED: hypothetical protein XP_002342442 
LOC100290372          0.011   PREDICTED: hypothetical protein XP_002346788 
LOC731282             0.011   PREDICTED: hypothetical protein 
LOC100288606          0.011   PREDICTED: hypothetical protein XP_002342652 
FGD5                  0.011   FYVE, RhoGEF and PH domain containing 5 
SNAPC4                0.011   small nuclear RNA activating complex, polypeptide 4,...
LOC100292745          0.011   PREDICTED: hypothetical protein 
LOC100290074          0.011   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.011   PREDICTED: hypothetical protein XP_002342693 
RIMS1                 0.011   regulating synaptic membrane exocytosis 1 
MAST3                 0.011   microtubule associated serine/threonine kinase 3 [H...
LOC100293375          0.009   PREDICTED: hypothetical protein 
LOC100287141          0.009   PREDICTED: hypothetical protein XP_002343631 
LOC100129697          0.009   PREDICTED: hypothetical protein 
GGT5                  0.009   gamma-glutamyltransferase 5 isoform a 
GGT5                  0.009   gamma-glutamyltransferase 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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