Guide to the Human Genome
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Name: EVC Sequence: fasta or formatted (992aa) NCBI GI: 24497531
Description:

Ellis van Creveld syndrome protein

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         91           2
 C cysteine            1.7         17           1
 D aspartate           4.4         44           2
 E glutamate           9.9         98           4
 F phenylalanine       2.7         27           1
 G glycine             5.2         52           2
 H histidine           2.6         26           1
 I isoleucine          1.8         18           1
 K lysine              5.9         59           3
 L leucine            14.6        145           3
 M methionine          2.5         25           2
 N asparagine          2.4         24           2
 P proline             2.8         28           2
 Q glutamine           9.1         90           4
 R arginine            7.4         73           3
 S serine              7.5         74           5
 T threonine           4.0         40           1
 V valine              4.3         43           2
 W tryptophan          0.7          7           1
 Y tyrosine            1.1         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ellis van Creveld syndrome protein 
CEP250                0.026   centrosomal protein 2 
CGN                   0.018   cingulin 
PLEC1                 0.018   plectin 1 isoform 11 
PLEC1                 0.018   plectin 1 isoform 10 
PLEC1                 0.018   plectin 1 isoform 8 
PLEC1                 0.018   plectin 1 isoform 7 
PLEC1                 0.018   plectin 1 isoform 6 
PLEC1                 0.018   plectin 1 isoform 3 
PLEC1                 0.018   plectin 1 isoform 2 
PLEC1                 0.018   plectin 1 isoform 1 
TPR                   0.018   nuclear pore complex-associated protein TPR 
MYH7B                 0.016   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
PCNT                  0.016   pericentrin 
GOLGA3                0.015   Golgi autoantigen, golgin subfamily a, 3 
MYH14                 0.014   myosin, heavy chain 14 isoform 1 
MYH14                 0.014   myosin, heavy chain 14 isoform 2 
MYH14                 0.014   myosin, heavy chain 14 isoform 3 
NUMA1                 0.013   nuclear mitotic apparatus protein 1 
FBF1                  0.013   Fas (TNFRSF6) binding factor 1 
CCDC136               0.013   coiled-coil domain containing 136 
ERC1                  0.013   RAB6-interacting protein 2 isoform epsilon 
MYO18A                0.013   myosin 18A isoform b 
EEA1                  0.012   early endosome antigen 1, 162kD 
GOLGB1                0.012   golgi autoantigen, golgin subfamily b, macrogolgin ...
LOC727832             0.012   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.012   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TCHH                  0.012   trichohyalin 
CROCC                 0.012   ciliary rootlet coiled-coil 
FAM184A               0.012   hypothetical protein LOC79632 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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