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Search of human proteins with 239752764
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
(370 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 761 0.0
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 480 e-135
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 480 e-135
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 57 3e-08
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 56 5e-08
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 56 5e-08
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 56 5e-08
gi|19924099 synapsin I isoform Ia [Homo sapiens] 54 2e-07
gi|19924097 synapsin I isoform Ib [Homo sapiens] 54 2e-07
gi|33286436 gametogenetin [Homo sapiens] 54 2e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 54 3e-07
gi|60460889 Myb protein P42POP [Homo sapiens] 53 5e-07
gi|163965366 nascent polypeptide-associated complex alpha subuni... 51 1e-06
gi|77681565 NG5 protein [Homo sapiens] 51 2e-06
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 50 2e-06
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 50 3e-06
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi... 50 3e-06
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 50 4e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 49 6e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 49 6e-06
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 49 7e-06
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 49 7e-06
gi|157785645 SPEG complex locus [Homo sapiens] 49 7e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 49 9e-06
gi|7706501 WW domain binding protein 11 [Homo sapiens] 49 9e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 49 9e-06
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 48 1e-05
gi|169167057 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|160707881 formin 2 [Homo sapiens] 48 1e-05
gi|47132519 Ras association and pleckstrin homology domains 1 is... 48 1e-05
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 761 bits (1965), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR
Sbjct: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
Query: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR
Sbjct: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
Query: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG
Sbjct: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS 240
LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS
Sbjct: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS 240
Query: 241 AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVP 300
AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVP
Sbjct: 241 AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVP 300
Query: 301 STARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRGSHAAG 360
STARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRGSHAAG
Sbjct: 301 STARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRGSHAAG 360
Query: 361 AGWTAVAAGD 370
AGWTAVAAGD
Sbjct: 361 AGWTAVAAGD 370
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 480 bits (1235), Expect = e-135
Identities = 261/367 (71%), Positives = 264/367 (71%), Gaps = 47/367 (12%)
Query: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR
Sbjct: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
Query: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR
Sbjct: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
Query: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG
Sbjct: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS 240
LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHAR
Sbjct: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHAR------------------------- 215
Query: 241 AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVP 300
AHS AHT GGGEGDPGPIVGGRPENEDS P P P P
Sbjct: 216 AHSRAHT----------------CAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAGPSP 259
Query: 301 STARARSPG-----ARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRG 355
PG AR G A +R T AR R R ++ PRG
Sbjct: 260 FYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGAR-RLRSLASRLPRG 318
Query: 356 SHAAGAG 362
G
Sbjct: 319 GRWLDGG 325
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 480 bits (1235), Expect = e-135
Identities = 261/367 (71%), Positives = 264/367 (71%), Gaps = 47/367 (12%)
Query: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR
Sbjct: 1 MMLAENRKACSSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTR 60
Query: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR
Sbjct: 61 LRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR 120
Query: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG
Sbjct: 121 RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS 240
LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHAR
Sbjct: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHAR------------------------- 215
Query: 241 AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVP 300
AHS AHT GGGEGDPGPIVGGRPENEDS P P P P
Sbjct: 216 AHSRAHT----------------CAGGGEGDPGPIVGGRPENEDSPRFPDVPTRPAGPSP 259
Query: 301 STARARSPG-----ARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRG 355
PG AR G A +R T AR R R ++ PRG
Sbjct: 260 FYCEGTEPGSQAWSARAGTASWETAAAQRPDQLEETRPPGAARPGAR-RLRSLASRLPRG 318
Query: 356 SHAAGAG 362
G
Sbjct: 319 GRWLDGG 325
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 56.6 bits (135), Expect = 3e-08
Identities = 85/321 (26%), Positives = 108/321 (33%), Gaps = 63/321 (19%)
Query: 75 RAC-PGRGRGGLPGAAALGAGAQQPRRRRLAQPP-----GSRAPLQ-------------V 115
R C PGRG A+L G Q R A P S +PL
Sbjct: 326 RGCDPGRGPTWGRAGASLARGPQPDRTHPSAAVPVCPRSASASPLTPCSVTRSVHRCAPA 385
Query: 116 GGAPRRRAHLTGGPP---RRRPPRLAAAHGLPASEAPGLRPDSARTRLRL-RLASARLPR 171
G RR GG P RRRP A + E ++ + + L R S + +
Sbjct: 386 GERGERRKPNAGGSPAPVRRRPE----ASPVQKKEKKDKERENEKEKSALARERSLKKRQ 441
Query: 172 GLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPP 231
LP +P A L + + L P P SP H P+P P LPP
Sbjct: 442 SLPASPRARLSASTASELSPKSKARP--------SSPSTSWHRPASPCPSPGPGHTLPPK 493
Query: 232 AP-----------------PAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGP 274
P A +PSA P + A + PA P P
Sbjct: 494 PPSPRGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSP 553
Query: 275 IVGGRPENED-------SLASQTSPPAPPAPV-PSTARARSPGARRGARELAPRAGRRRQ 326
P+ E A TSPPAP PV PS A + R LA + + R+
Sbjct: 554 -TPAPPQKEQPPAETPTDAAVLTSPPAPAPPVTPSKPMAGTTDREEATRLLAEKRRQARE 612
Query: 327 PSGRTSWRRR--ARREQRDRE 345
R RR A R++R RE
Sbjct: 613 QREREEQERRLQAERDKRMRE 633
Score = 37.0 bits (84), Expect = 0.028
Identities = 43/159 (27%), Positives = 59/159 (37%), Gaps = 20/159 (12%)
Query: 194 LQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAAR----TPSAHSPAHTHF 249
++ P G P V ART P PSP PP PP + TP PA +
Sbjct: 1 MESGPRAELGAGAPPAVV--ARTPPEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMKNA 58
Query: 250 TLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSP--PAPPAPVPSTA---- 303
T + L P G+ P P P E+S +S+ P PPA P A
Sbjct: 59 T----SSKQLPLEPESPSGQVGPRP----APPQEESPSSEAKSRGPTPPAMGPRDARPPR 110
Query: 304 RARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQR 342
R+ P +P + + +G + RRE+R
Sbjct: 111 RSSQPSPTAVPASDSPPTKQEVKKAGERHKLAKERREER 149
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 56.2 bits (134), Expect = 5e-08
Identities = 99/376 (26%), Positives = 127/376 (33%), Gaps = 74/376 (19%)
Query: 48 AHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRG----GLPG---------AAALGAG 94
A ++P +LR+ G R C G G G P A GA
Sbjct: 178 ARRKTPLSLCPLKLRK--------GSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229
Query: 95 AQQPRRRRLAQPPGSRAPLQV-GGAPRRRAHLTGGPPRRR---PPRLAAAHGLPASEAPG 150
AQ + A P + P V G RA GG R+R P + + G P E
Sbjct: 230 AQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPTGERSS 289
Query: 151 LRP--DSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLL------------QP 196
P D ++ L +AR+ PP+ AA WR G + +P +L +
Sbjct: 290 REPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEE 349
Query: 197 PPMLSPGLAQSPGVELHAR---------TLSLPAPSPA-PCLPPP---APPAARTPSAHS 243
P L + G EL AR +LP PS A P P P APPA
Sbjct: 350 DPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAPPARLRGGGGG 409
Query: 244 PAHTHF------TLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPA 297
T + T AL RG P ++ G P S PAP +
Sbjct: 410 SGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPH-----FRPLSSPAPQS 464
Query: 298 PVPSTARARSPGARRGAREL----APRAGRR-----RQPSGRTSW-RRRARREQRDREPA 347
P P + R+ G R GA L APRA PS W +R +P
Sbjct: 465 P-PRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPF 523
Query: 348 VCGAWPRGSHAAGAGW 363
RG AG W
Sbjct: 524 AGRRAERGKRGAGVPW 539
Score = 31.6 bits (70), Expect = 1.2
Identities = 52/201 (25%), Positives = 62/201 (30%), Gaps = 45/201 (22%)
Query: 11 SSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVI 70
S A W LG + +R E + PAQ S+ R R G
Sbjct: 317 SLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSS 376
Query: 71 VGRRRACPGRGRGGLPGAAALGAGAQQPRRRR---------------------------- 102
R P R R G P G+ P R R
Sbjct: 377 GARTLPTPSRARPGKPAP----RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHA 432
Query: 103 LAQPPGSRAPLQVG---GAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTR 159
LA GSRAP VG G P R P + PPR P+ A G R + R
Sbjct: 433 LATRRGSRAPRPVGVLRGVPHFRP--LSSPAPQSPPR------SPSVRAFGPRLGAGRLS 484
Query: 160 LRLRLASARLP--RGLPPAPA 178
+A LP L P+PA
Sbjct: 485 CPQAPRAAALPGIAVLAPSPA 505
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 56.2 bits (134), Expect = 5e-08
Identities = 99/376 (26%), Positives = 127/376 (33%), Gaps = 74/376 (19%)
Query: 48 AHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRG----GLPG---------AAALGAG 94
A ++P +LR+ G R C G G G P A GA
Sbjct: 178 ARRKTPLSLCPLKLRK--------GSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229
Query: 95 AQQPRRRRLAQPPGSRAPLQV-GGAPRRRAHLTGGPPRRR---PPRLAAAHGLPASEAPG 150
AQ + A P + P V G RA GG R+R P + + G P E
Sbjct: 230 AQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPTGERSS 289
Query: 151 LRP--DSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLL------------QP 196
P D ++ L +AR+ PP+ AA WR G + +P +L +
Sbjct: 290 REPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEE 349
Query: 197 PPMLSPGLAQSPGVELHAR---------TLSLPAPSPA-PCLPPP---APPAARTPSAHS 243
P L + G EL AR +LP PS A P P P APPA
Sbjct: 350 DPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAPPARLRGGGGG 409
Query: 244 PAHTHF------TLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPA 297
T + T AL RG P ++ G P S PAP +
Sbjct: 410 SGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPH-----FRPLSSPAPQS 464
Query: 298 PVPSTARARSPGARRGAREL----APRAGRR-----RQPSGRTSW-RRRARREQRDREPA 347
P P + R+ G R GA L APRA PS W +R +P
Sbjct: 465 P-PRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPF 523
Query: 348 VCGAWPRGSHAAGAGW 363
RG AG W
Sbjct: 524 AGRRAERGKRGAGVPW 539
Score = 31.6 bits (70), Expect = 1.2
Identities = 52/201 (25%), Positives = 62/201 (30%), Gaps = 45/201 (22%)
Query: 11 SSAFMTWALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVI 70
S A W LG + +R E + PAQ S+ R R G
Sbjct: 317 SLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSS 376
Query: 71 VGRRRACPGRGRGGLPGAAALGAGAQQPRRRR---------------------------- 102
R P R R G P G+ P R R
Sbjct: 377 GARTLPTPSRARPGKPAP----RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHA 432
Query: 103 LAQPPGSRAPLQVG---GAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTR 159
LA GSRAP VG G P R P + PPR P+ A G R + R
Sbjct: 433 LATRRGSRAPRPVGVLRGVPHFRP--LSSPAPQSPPR------SPSVRAFGPRLGAGRLS 484
Query: 160 LRLRLASARLP--RGLPPAPA 178
+A LP L P+PA
Sbjct: 485 CPQAPRAAALPGIAVLAPSPA 505
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 56.2 bits (134), Expect = 5e-08
Identities = 67/260 (25%), Positives = 91/260 (35%), Gaps = 58/260 (22%)
Query: 87 GAAALGAGAQQPRRRR-LAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPA 145
G L G + P +++P S AP + P L PR + + G P+
Sbjct: 1456 GPLLLQLGTEPPAPHPGVSKPWRSAAPEEPERLPLHVRFLENCQPRAP---VTSGRGPPS 1512
Query: 146 SEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPM------ 199
+ PG+ P S R R +PP+P + RA PLL+ PPP
Sbjct: 1513 EDGPGVPPPSPR-------------RSVPPSPTSP--RASEENGLPLLVLPPPAPSVDVE 1557
Query: 200 ---------LSPGLAQSPGVELHARTLSLPAPSPAPCLP------PPAPPAARTPSAHSP 244
L P L S E L+ P P P P PP PP A + +
Sbjct: 1558 DGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDTPAPATPLPPVPPPAVAAAPPTL 1617
Query: 245 AHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTAR 304
T +LT ++ LT GDP P PPAP AP P+ +
Sbjct: 1618 DSTASSLTSYDSEVATLTQGASAAPGDPHP---------------PGPPAPAAPAPAAPQ 1662
Query: 305 A---RSPGARRGARELAPRA 321
PG G E+ R+
Sbjct: 1663 PGPDPPPGTDSGIEEVDSRS 1682
Score = 43.1 bits (100), Expect = 4e-04
Identities = 76/271 (28%), Positives = 90/271 (33%), Gaps = 71/271 (26%)
Query: 79 GRGRGGL-PGAAALGAGAQQPR------RRRLAQPPGSRA-----PLQVGGAPRRRA--- 123
G G GG G+ A G G R L P +A PL + A R RA
Sbjct: 1307 GAGYGGYGAGSRAYGGGGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKE 1366
Query: 124 HLTGG-----PPRRRPPRLAAA------HGLPASEAPGLR------PDSARTRLRLRLAS 166
GG PPR PR A H A P LR PD AR L R
Sbjct: 1367 SSEGGGAPQPPPRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGL 1426
Query: 167 ARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAP 226
+ LP +P A R LL + PP +PGV L P+P P
Sbjct: 1427 GSQEKSLPASPPAAR--------RSLLHRLPPT-------APGVGPLLLQLGTEPPAPHP 1471
Query: 227 CLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGR-PENEDS 285
+ P AA P H F L RA P+ GR P +ED
Sbjct: 1472 GVSKPWRSAAPEEPERLPLHVRF---LENCQPRA-------------PVTSGRGPPSEDG 1515
Query: 286 LASQTSPPAPPAPVPSTARARSPGARRGARE 316
P P P P + SP + R + E
Sbjct: 1516 -------PGVPPPSPRRSVPPSPTSPRASEE 1539
Score = 42.7 bits (99), Expect = 5e-04
Identities = 79/297 (26%), Positives = 97/297 (32%), Gaps = 67/297 (22%)
Query: 75 RACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRA------PLQVGGAPRRRAHLTGG 128
RA GRG P G PRR P RA PL V P + G
Sbjct: 1501 RAPVTSGRGP-PSEDGPGVPPPSPRRSVPPSPTSPRASEENGLPLLVLPPPAPSVDVEDG 1559
Query: 129 P---PRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAG 185
PP L ++ E+P L P + LP PPA AA
Sbjct: 1560 EFLFVEPLPPPLEFSNSFEKPESP-LTPGPPHPLPDTPAPATPLPPVPPPAVAAA----- 1613
Query: 186 CTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLP-PPAPPAARTPSAHSP 244
PP L + + TL+ A S AP P PP PPA P+ +P
Sbjct: 1614 -----------PPTLDSTASSLTSYDSEVATLTQGA-SAAPGDPHPPGPPAPAAPAPAAP 1661
Query: 245 ---------------------AHTHFTLTLAEAHTRALTPARGGGE----GDPGPIVGGR 279
+ H T++ A T + A GGG G G V
Sbjct: 1662 QPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASG 1721
Query: 280 PENEDSLASQ--------TSPPAPPAP----VPSTARARSPGARRGARELAPRAGRR 324
PE D+ + +S P PP P PS R R+ GA G R P G R
Sbjct: 1722 PELLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLRGRALGASGGLRP-GPSGGLR 1777
Score = 40.8 bits (94), Expect = 0.002
Identities = 70/253 (27%), Positives = 84/253 (33%), Gaps = 67/253 (26%)
Query: 126 TGGPPRRRPPRLAAA--------HGLPASEAPGLRPDSARTRLRLRLASARLPR----GL 173
TGG P PPRLA G S PG S S++ P L
Sbjct: 1028 TGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRYFQL 1087
Query: 174 PPAPAAGLW----RAGCTRLRPLLLQPP----PMLSPGLAQSPGVELHARTLSLPAPSPA 225
PP A+ R+G R PL+ Q P GL PAPSP
Sbjct: 1088 PPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLP--------------PAPSPT 1133
Query: 226 PCLPPPAPPAARTPS-----------------AHSPAHTHFTLTLAEAHTRALTPARGGG 268
P PPA PS + S + + T AE T+ P GGG
Sbjct: 1134 SPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQP-EPTGGGG 1192
Query: 269 EGDPGPIVGGRPENEDSLASQTSP-PAPPAPVPSTARARSPGARRGAREL-APRAGRRRQ 326
G P S A SP P P+PVP+ A P + A G R+
Sbjct: 1193 GGGSSP----------SPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARR 1242
Query: 327 PSGRTSWRRRARR 339
G W+ ARR
Sbjct: 1243 EGG---WQNEARR 1252
Score = 36.6 bits (83), Expect = 0.037
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 272 PGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARELAPRAGR-----RRQ 326
PG G P Q+ P AP + S+ RS + RGAR +P GR +RQ
Sbjct: 454 PGAASSGAPGPTSGSQGQSQPSAPTTKL-SSGTLRSASSPRGARARSPSRGRHPEDAKRQ 512
Query: 327 PSGRTS 332
P GR S
Sbjct: 513 PRGRPS 518
Score = 33.9 bits (76), Expect = 0.24
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 31/130 (23%)
Query: 190 RPLLLQPPPML-----SPGLAQ------SPGVELHARTLSLPAPS---PAPCLPPPAPPA 235
RP L P P L S G A+ +P +R+LS+P P P PP PP
Sbjct: 874 RPSFLPPGPGLMLRQKSIGAAEDDRPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPY 933
Query: 236 ARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAP 295
+ P S LTP+ GG +PG G P S AS P P
Sbjct: 934 STPPVPSSSGR--------------LTPSPRGGPFNPG---SGGPLPASSPASFDGPSPP 976
Query: 296 PAPVPSTARA 305
V S ++
Sbjct: 977 DTRVGSREKS 986
Score = 33.1 bits (74), Expect = 0.41
Identities = 55/196 (28%), Positives = 68/196 (34%), Gaps = 28/196 (14%)
Query: 155 SARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSP--GLAQSP---- 208
SA LRL A + G A + G + L P P++ P G A P
Sbjct: 1294 SAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSAFTSFLPPRPLVHPLTGKALDPASPL 1353
Query: 209 GVELHARTLSLPAPSP---APCLPPPAPPAAR------TPSAHSPAHTHFTLTLAEAHTR 259
G+ L AR +L S AP PPP PP+ R TP HSP H H L
Sbjct: 1354 GLALAARERALKESSEGGGAP-QPPPRPPSPRYEAPPPTPHHHSP-HAHHEPVLRLWGAS 1411
Query: 260 ALTPA------RGGGEGDPGPIVGGRPENEDSLASQTSPPAPPA-----PVPSTARARSP 308
PA R G + P SL + P AP + + A P
Sbjct: 1412 PPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPPAPHP 1471
Query: 309 GARRGARELAPRAGRR 324
G + R AP R
Sbjct: 1472 GVSKPWRSAAPEEPER 1487
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 54.3 bits (129), Expect = 2e-07
Identities = 75/249 (30%), Positives = 93/249 (37%), Gaps = 29/249 (11%)
Query: 73 RRRACPGRGRGG---LPGAAALGAGAQQPRRRRLAQ--PPGSRAPLQVGGAPRRRAHLTG 127
+R A PGRG G PGA LG Q AQ PP P Q G P+R+ G
Sbjct: 423 QRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQ----G 478
Query: 128 GPPRRRPPRLAAAH----GLPASEAPGLR---PDSARTRLRLRLASARLPRGLPPAPAAG 180
P ++RPP H G PA R P SA + + A +G P AG
Sbjct: 479 PPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAG 538
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS 240
A P +PP SP P ++S PAP P PP + P
Sbjct: 539 GPGA------PPAARPPASPSPQRQAGPPQATRQTSVSGPAP-PKASGAPPGGQQRQGPP 591
Query: 241 AHSPAHTHFTLTLAEAHTRALT-PARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPV 299
P T ++A T P GP GRP+ + LA + S PP
Sbjct: 592 QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ--LAQKPSQDVPP--- 646
Query: 300 PSTARARSP 308
P+TA A P
Sbjct: 647 PATAAAGGP 655
Score = 47.0 bits (110), Expect = 3e-05
Identities = 54/193 (27%), Positives = 72/193 (37%), Gaps = 48/193 (24%)
Query: 170 PRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSP---GLAQSPGVELHARTLSLPAPSPAP 226
P+G PP P G R G PL +PPP GL G L R LP+P+ AP
Sbjct: 463 PQGGPPQPGPGPQRQG----PPLQQRPPPQGQQHLSGLGPPAGSPLPQR---LPSPTSAP 515
Query: 227 CLP---------------------PPAPPAARTPSAHSPAH-------THFTLTLAEAHT 258
P P APPAAR P++ SP T T A
Sbjct: 516 QQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPP 575
Query: 259 RALTPARGGGEGD------PGPIVGGRPENEDSLASQTSPPAPPAPVPS----TARARSP 308
+A GG + PGP R ++ +T PP P PS R +
Sbjct: 576 KASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
Query: 309 GARRGARELAPRA 321
A++ ++++ P A
Sbjct: 636 LAQKPSQDVPPPA 648
Score = 44.3 bits (103), Expect = 2e-04
Identities = 60/219 (27%), Positives = 77/219 (35%), Gaps = 39/219 (17%)
Query: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACP 78
LGP A S +P RLP P + Q A +P Q R R P
Sbjct: 496 LGPPAGSPLPQRLP------SPTSAPQQPASQAAPPTQGQGRQSR--------------P 535
Query: 79 GRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGG--APRRRAHLTGGPPRRRPPR 136
G G P AA A P +R A PP + V G P+ GG R+ PP+
Sbjct: 536 VAGGPGAPPAARPPA---SPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 137 LAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQP 196
P P + A R + + PR P PA R +P L Q
Sbjct: 593 KP-----PGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG--------RPKPQLAQK 639
Query: 197 PPM-LSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPP 234
P + P + G H + + + A LP PAPP
Sbjct: 640 PSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPP 678
Score = 37.7 bits (86), Expect = 0.017
Identities = 46/166 (27%), Positives = 56/166 (33%), Gaps = 18/166 (10%)
Query: 201 SPGLAQSPG-VELHARTLSLPAPSPAPCLPPPA---PPAARTPSAHSPAHTHFTLTLAEA 256
S G SPG + L +T PA PA PPP P P P +
Sbjct: 432 SHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQ 491
Query: 257 HTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARE 316
H L P G P P+ ASQ +PP S A PGA AR
Sbjct: 492 HLSGLGPPAGSPLPQRLPSPTSAPQQP---ASQAAPPTQGQGRQSRPVAGGPGAPPAAR- 547
Query: 317 LAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRGSHAAGAG 362
P S +R+A Q R+ +V G P + A G
Sbjct: 548 ----------PPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPG 583
Score = 32.0 bits (71), Expect = 0.91
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 230 PPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQ 289
PP PP P AHSP T T + + PA PG GG + S A +
Sbjct: 30 PPPPP----PGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNAVK 85
Query: 290 TSPPAPPAPVPSTARARSPGARRG 313
+ A A S GA RG
Sbjct: 86 QTTAAAAATFSEQVGGGSGGAGRG 109
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 54.3 bits (129), Expect = 2e-07
Identities = 75/249 (30%), Positives = 93/249 (37%), Gaps = 29/249 (11%)
Query: 73 RRRACPGRGRGG---LPGAAALGAGAQQPRRRRLAQ--PPGSRAPLQVGGAPRRRAHLTG 127
+R A PGRG G PGA LG Q AQ PP P Q G P+R+ G
Sbjct: 423 QRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQ----G 478
Query: 128 GPPRRRPPRLAAAH----GLPASEAPGLR---PDSARTRLRLRLASARLPRGLPPAPAAG 180
P ++RPP H G PA R P SA + + A +G P AG
Sbjct: 479 PPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAG 538
Query: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPS 240
A P +PP SP P ++S PAP P PP + P
Sbjct: 539 GPGA------PPAARPPASPSPQRQAGPPQATRQTSVSGPAP-PKASGAPPGGQQRQGPP 591
Query: 241 AHSPAHTHFTLTLAEAHTRALT-PARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPV 299
P T ++A T P GP GRP+ + LA + S PP
Sbjct: 592 QKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ--LAQKPSQDVPP--- 646
Query: 300 PSTARARSP 308
P+TA A P
Sbjct: 647 PATAAAGGP 655
Score = 47.0 bits (110), Expect = 3e-05
Identities = 54/193 (27%), Positives = 72/193 (37%), Gaps = 48/193 (24%)
Query: 170 PRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSP---GLAQSPGVELHARTLSLPAPSPAP 226
P+G PP P G R G PL +PPP GL G L R LP+P+ AP
Sbjct: 463 PQGGPPQPGPGPQRQG----PPLQQRPPPQGQQHLSGLGPPAGSPLPQR---LPSPTSAP 515
Query: 227 CLP---------------------PPAPPAARTPSAHSPAH-------THFTLTLAEAHT 258
P P APPAAR P++ SP T T A
Sbjct: 516 QQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPP 575
Query: 259 RALTPARGGGEGD------PGPIVGGRPENEDSLASQTSPPAPPAPVPS----TARARSP 308
+A GG + PGP R ++ +T PP P PS R +
Sbjct: 576 KASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635
Query: 309 GARRGARELAPRA 321
A++ ++++ P A
Sbjct: 636 LAQKPSQDVPPPA 648
Score = 42.0 bits (97), Expect = 9e-04
Identities = 60/228 (26%), Positives = 76/228 (33%), Gaps = 56/228 (24%)
Query: 19 LGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACP 78
LGP A S +P RLP P + Q A +P Q R R P
Sbjct: 496 LGPPAGSPLPQRLP------SPTSAPQQPASQAAPPTQGQGRQSR--------------P 535
Query: 79 GRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGG--APRRRAHLTGGPPRRRPPR 136
G G P AA A P +R A PP + V G P+ GG R+ PP+
Sbjct: 536 VAGGPGAPPAARPPA---SPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQ 592
Query: 137 LAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQP 196
P P + A R + + PR P PA RP
Sbjct: 593 KP-----PGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG----------RP----- 632
Query: 197 PPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSP 244
P LAQ P + +P P+ A PP P +P+ P
Sbjct: 633 ----KPQLAQKPSQD-------VPPPATAAAGGPPHPQLKASPAQAQP 669
Score = 37.7 bits (86), Expect = 0.017
Identities = 46/166 (27%), Positives = 56/166 (33%), Gaps = 18/166 (10%)
Query: 201 SPGLAQSPG-VELHARTLSLPAPSPAPCLPPPA---PPAARTPSAHSPAHTHFTLTLAEA 256
S G SPG + L +T PA PA PPP P P P +
Sbjct: 432 SHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQ 491
Query: 257 HTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARE 316
H L P G P P+ ASQ +PP S A PGA AR
Sbjct: 492 HLSGLGPPAGSPLPQRLPSPTSAPQQP---ASQAAPPTQGQGRQSRPVAGGPGAPPAAR- 547
Query: 317 LAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRGSHAAGAG 362
P S +R+A Q R+ +V G P + A G
Sbjct: 548 ----------PPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPG 583
Score = 32.0 bits (71), Expect = 0.91
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 230 PPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQ 289
PP PP P AHSP T T + + PA PG GG + S A +
Sbjct: 30 PPPPP----PGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNAVK 85
Query: 290 TSPPAPPAPVPSTARARSPGARRG 313
+ A A S GA RG
Sbjct: 86 QTTAAAAATFSEQVGGGSGGAGRG 109
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 53.9 bits (128), Expect = 2e-07
Identities = 92/342 (26%), Positives = 111/342 (32%), Gaps = 89/342 (26%)
Query: 79 GRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGG---------P 129
G G GGL AA GA + ++ PPG+ PL G R GG P
Sbjct: 270 GGGGGGL--FAASGAISYAEVLKQGPLPPGAARPL--GEVSRGAQEAEGGDGDGEGCSGP 325
Query: 130 PRRRPPRLAAAHGLPASEAPGLRP--------DSARTRLRL------------RLASARL 169
P + A P + PG +P D R R A+
Sbjct: 326 PSAPASQARALPPPPYTTFPGSKPKFDWVSAPDGPERHFRFNGAGGGIGAPRRRAAALSG 385
Query: 170 PRGLPPAPAAGLWRA-GCTRLRPLLLQPPPMLSP----GLAQSPGVELHARTLSLPAPSP 224
P G PP P + A G R P LL PP + P G PG P
Sbjct: 386 PWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGP---------PGLQE 436
Query: 225 APCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENED 284
P LPPP PP P A P L +A P+ G E
Sbjct: 437 LPPLPPPTPPPTLQPPALQPT----PLPVAP------------------PLTPGLGHKES 474
Query: 285 SLASQTSPPAPP------APVPSTARA-----RSPGARRGARELAPRAGRRRQPSGRTSW 333
+LA +P PP AP PS A A SP A AP R R+ G +
Sbjct: 475 ALAPTAAPALPPALAADQAPAPSPAPAPTVAEPSPPVSAPAPAAAPIKTRTRRNKGSRAA 534
Query: 334 RRRARRE------QRDREPAVCGAWPRGSHAAGAGWTAVAAG 369
R R++ R+R A P S G G A G
Sbjct: 535 RGATRKDGLHGDGPRERATATV---PDSSGGGGGGSGASQTG 573
Score = 46.2 bits (108), Expect = 5e-05
Identities = 64/217 (29%), Positives = 81/217 (37%), Gaps = 56/217 (25%)
Query: 153 PDSARTRL---RLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPG 209
PDS RT L + + RL RGL G+W G L++ P SP
Sbjct: 24 PDSRRTSLVEPEMTSQAMRLTRGL------GVWFPGSATPPGLMVPREPQASPS------ 71
Query: 210 VELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHT--------HFTLTLAEAHTRAL 261
TL L P+P +PPP AA + +PA T R L
Sbjct: 72 ------TLPLTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPRIRRL 125
Query: 262 TPARGGGEGDP---GPIVGGRPENEDSL-------ASQTSPP----APPAPVPSTARARS 307
A G+GDP P+ P + S+ SQ PP PP P+PS R
Sbjct: 126 LEASHRGQGDPPSLRPLKPPPPPRQLSVKDTVPRAPSQFPPPLETWKPPPPLPS---ERQ 182
Query: 308 PGARRGARELA--------PRAGRRRQPSGRTSWRRR 336
P RR LA +AG R Q G+T+ R R
Sbjct: 183 PADRRITPALATPASPPTESQAGPRNQ--GQTAGRAR 217
Score = 30.4 bits (67), Expect = 2.7
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 239 PSAHSPAHTHFTLTLAEAHTRALTPARG------GGEGDPGPIVGGRPENEDSLASQT-S 291
PS +P +L E ++A+ RG G PG +V P+ S T
Sbjct: 19 PSDRAPDSRRTSLVEPEMTSQAMRLTRGLGVWFPGSATPPGLMVPREPQASPSTLPLTLE 78
Query: 292 PPAPPAPVPSTARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDR 344
P+P P P A A S A L P + ++P+G R R E R
Sbjct: 79 RPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSKWQKPAGTPVPRIRRLLEASHR 131
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 53.5 bits (127), Expect = 3e-07
Identities = 72/270 (26%), Positives = 92/270 (34%), Gaps = 45/270 (16%)
Query: 78 PGRGRGG----LPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRR 133
P G G +P AAA+ AG + P P + G A GP
Sbjct: 129 PPEGSAGSCAPVPAAAAVAAGPE----------PAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 134 PPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPL- 192
P G PA P +A+T L ++A L APA L G L PL
Sbjct: 179 GPGPGPGPGKPAG------PGAAQT---LNGSAALLNSHHAAAPAVSLVNNGPAALLPLP 229
Query: 193 -------LLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPA 245
++Q PP + +P + AP+ AP PPPAP P P
Sbjct: 230 KPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARP----PG 285
Query: 246 HTHFTLTLAEAHTRALTPARGGGEG---DPGPIVGGRPENEDSLASQTSPPAPPAPVPST 302
H T A A GG G P P GG ++ Q P A A
Sbjct: 286 HPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGG----PAGVSGQPGPGAAAAAPAPG 341
Query: 303 ARARSPGARRGARELAPRAGRRRQPSGRTS 332
+A SP + + AP A + SG S
Sbjct: 342 VKAESP---KRVVQAAPPAAQTLAASGPAS 368
Score = 45.8 bits (107), Expect = 6e-05
Identities = 72/266 (27%), Positives = 85/266 (31%), Gaps = 61/266 (22%)
Query: 78 PGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRL 137
P G P A A GA P +PP P RA GG P+R P
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAP------EPP-----------PAGRARPGGGGPQRPGPPS 109
Query: 138 AAAHGLPASEAPGLR-----PDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPL 192
+PA AP P+ + A+A + G PAPA AG L
Sbjct: 110 PRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAAL--- 166
Query: 193 LLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAART-------PSAHSPA 245
PG PG P P P P P P AA+T ++H A
Sbjct: 167 ----AARAGPGPGPGPG----------PGPGPGPG-KPAGPGAAQTLNGSAALLNSHHAA 211
Query: 246 HTHFTLT------------LAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPP 293
+L A T TP G P P P A +PP
Sbjct: 212 APAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPP 271
Query: 294 APPAPVPSTARARSPGARRGARELAP 319
PP P P+T AR PG G AP
Sbjct: 272 -PPPPAPATL-ARPPGHPAGPPTAAP 295
Score = 42.0 bits (97), Expect = 9e-04
Identities = 75/273 (27%), Positives = 93/273 (34%), Gaps = 61/273 (22%)
Query: 78 PGRGRGGLPGAA-ALGAGAQQPRRRRLAQP--------PGSRAPLQVGGAPRRRAHLTGG 128
PG G+ PGAA L A A P P + PL AP G
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAP--------G 235
Query: 129 PPRRRPPRL-AAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWR---- 183
+ PP + AAA PA+ +P P A A A P PPAPA L R
Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSPPAAPAPA--------APAAAPPPPPPAPAT-LARPPGH 286
Query: 184 -AGCTRLRPLLLQPPPML-----SPGLAQSPGVELH--ARTLSLPAPSPAPCLPPP---- 231
AG P + PPP S G A +P A P P A P P
Sbjct: 287 PAGPPTAAPAV--PPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKA 344
Query: 232 ---------APPAARTPSAHSPAHTHFTLTLAEAHTRAL-------TPARGGGEGDPGPI 275
APPAA+T +A PA T ++ + AL PA G G P
Sbjct: 345 ESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGA 404
Query: 276 VGGRPENEDSLASQTSPPAPPAPVPSTARARSP 308
G ++ + T+ P+ R P
Sbjct: 405 AGAVTQSLSRTPTATTSGIRATLTPTVLAPRLP 437
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 52.8 bits (125), Expect = 5e-07
Identities = 72/255 (28%), Positives = 93/255 (36%), Gaps = 53/255 (20%)
Query: 86 PGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRR-AHLTGGPPRRRPPRLAAAHGLP 144
P G +P+ R + PP + P+Q+ PR + PP PP LA P
Sbjct: 185 PSCTPQEGGCPRPKERE-SPPPSALQPVQL---PRLALSPPPPAPPLPPPPPLAQVAPSP 240
Query: 145 ASEAPGLRP-------DSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPP 197
S P RP D + LR + +A R L AG R G +L L
Sbjct: 241 PSPPPPPRPPPTLSASDPSLDFLRAQQETANAIREL-----AGTLRQGLAKLSEALSALL 295
Query: 198 PMLSPGLAQSPGVELHARTLSLPAPSPAP-----CLPPPAPPAARTPSAHSPAHTHFTLT 252
P+L PG + + LP P P P LPPPAP TP S
Sbjct: 296 PLL-------PGTPVDSLPPPLPPPPPPPPPPRPVLPPPAPKVEITPEPVS--------V 340
Query: 253 LAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARR 312
+A A+ AR G I+ R E + +P PPAP+P P RR
Sbjct: 341 VAAVVDGAVVAAR-------GVIIAPRSE-------EGAPRPPPAPLP--PHDSPPHKRR 384
Query: 313 GARELAPRAGRRRQP 327
R GR + P
Sbjct: 385 KGFPTRKRRGRWKSP 399
Score = 43.5 bits (101), Expect = 3e-04
Identities = 65/240 (27%), Positives = 76/240 (31%), Gaps = 66/240 (27%)
Query: 86 PGAAA--LGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGL 143
PG AA GAGA++P +QPP A P+R RR A +
Sbjct: 122 PGVAAPGAGAGAEEPPAAPSSQPPPPSA------CPQRYVLSEDRREDRRADTSAHSKAG 175
Query: 144 PASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPG 203
+S P RP P G GC R + PP L P
Sbjct: 176 SSSPEPWARPSCT--------------------PQEG----GCPRPKERESPPPSALQP- 210
Query: 204 LAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTP 263
Q P L+L P PAP LPPP P A PS SP A +L
Sbjct: 211 -VQLP-------RLALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDF 262
Query: 264 ARGGGEGDPG-----------------------PIVGGRPENEDSLASQTSPPAPPAPVP 300
R E P++ G P DSL PP PP P P
Sbjct: 263 LRAQQETANAIRELAGTLRQGLAKLSEALSALLPLLPGTP--VDSLPPPLPPPPPPPPPP 320
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 51.2 bits (121), Expect = 1e-06
Identities = 62/250 (24%), Positives = 77/250 (30%), Gaps = 20/250 (8%)
Query: 84 GLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGL 143
G P A L GA L P G A + GAP PP PP
Sbjct: 1045 GSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPT--------PPAATPPSPKGGPAT 1096
Query: 144 PASEA----PGLRPDSARTRLRL--RLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPP 197
P+ + P P S + L + P PP+P GL P
Sbjct: 1097 PSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATP 1156
Query: 198 PMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTL---- 253
P GLA P + P PSP L P+P A T A +P L
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK 1215
Query: 254 -AEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARR 312
A A P+ GG P P + + P PP T A +P + +
Sbjct: 1216 GAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLK 1275
Query: 313 GARELAPRAG 322
G P G
Sbjct: 1276 GGLATPPHKG 1285
Score = 48.9 bits (115), Expect = 7e-06
Identities = 71/269 (26%), Positives = 85/269 (31%), Gaps = 46/269 (17%)
Query: 76 ACPGRGRGGLP-----GAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPP 130
A P +GGL GA A + LA PP AP P PP
Sbjct: 1108 ATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPP 1167
Query: 131 RRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLR 190
+ P AA P S GL S + + P PP+P GL
Sbjct: 1168 PKGAPTTPAA--TPPSPKGGLATPSPK-------GAPTTPAATPPSPKGGLATPSPKGAP 1218
Query: 191 PLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFT 250
PP GLA P+P AP P PP+ + A P
Sbjct: 1219 TTPAATPPSPKGGLAT-------------PSPKGAPTTPAATPPSPKGGPATPPPKG--- 1262
Query: 251 LTLAEAHTRALTPARGGG------EGDPGPIVGGRPENEDSLASQTSP----PAPPAPVP 300
A A P+ GG +G P P V P + A TSP P PPA P
Sbjct: 1263 ---APTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPA--TSPPKGAPTPPAATP 1317
Query: 301 STARARSPGARRGARELAPRAGRRRQPSG 329
+ + SPG P A P G
Sbjct: 1318 PSPKG-SPGTPPPKGAPTPPAVTPPSPKG 1345
Score = 43.9 bits (102), Expect = 2e-04
Identities = 68/312 (21%), Positives = 95/312 (30%), Gaps = 48/312 (15%)
Query: 27 IPPR---LPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRG 83
+PP+ P + P+E A ++PA + ++ + A P
Sbjct: 880 LPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGA 939
Query: 84 GLPGAAALGA---GAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAA 140
P AA + G P + PP + P GG PP PP
Sbjct: 940 PTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG 999
Query: 141 HGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPML 200
P+ + P + A+ P+G PAA P P
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAA--------------TPPSPKG 1045
Query: 201 SPGLAQSPGVELHARTLSLPAPSPAPCLP----PPAPPAARTPSAHSPAHTHFTLTLAEA 256
SP P +LP+P P P P PPAA PS
Sbjct: 1046 SPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKG------------- 1092
Query: 257 HTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARE 316
PA +G P P P + LA +PP AP T A +P + +G
Sbjct: 1093 -----GPATPSPKGAPMPPAATPPSPKGGLA---TPPHKGAP---TTPAATPPSPKGGLA 1141
Query: 317 LAPRAGRRRQPS 328
P G P+
Sbjct: 1142 TPPPKGAPTTPA 1153
Score = 39.7 bits (91), Expect = 0.004
Identities = 70/277 (25%), Positives = 84/277 (30%), Gaps = 63/277 (22%)
Query: 76 ACPGRGRGGLP-----GAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPP 130
A P +GGL GA A + LA P AP P P
Sbjct: 1154 ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS 1213
Query: 131 RRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLP--PAPAAGLWRAGCTR 188
+ P AA P S GL S + A+ P+G P P P T
Sbjct: 1214 PKGAPTTPAA--TPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT- 1270
Query: 189 LRPLLLQPPPMLSPGLAQSPGVELHARTLSLP--------------APSPAPCLPP---- 230
PP L GLA P + P AP+P PP
Sbjct: 1271 --------PPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKG 1322
Query: 231 ----PAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSL 286
P P A TP A +P T TL A TP+ GG P
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLP-----ATTPSSKGGPTTP-------------- 1363
Query: 287 ASQTSPPAPPAPVPSTARARS---PGARRGARELAPR 320
S P PPA PS + P +RG +P+
Sbjct: 1364 -SSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPK 1399
Score = 38.9 bits (89), Expect = 0.007
Identities = 48/167 (28%), Positives = 58/167 (34%), Gaps = 34/167 (20%)
Query: 193 LLQPPPMLSPGLAQSPGVELHARTLSLP-APSPAPCLPP-----PAPPAARTPSAHSPAH 246
+L P S A SP V SLP APSP P LPP P+ P S P
Sbjct: 1781 VLPKPESASVSAAPSPPV-------SLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKP-- 1831
Query: 247 THFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSP-------PAPPAPV 299
LA A L P P PI GG P + L + +P P P A
Sbjct: 1832 ------LAPADEDELLPLI-----PPEPISGGVP-FQSVLVNMPTPKSAGIPVPTPSAKQ 1879
Query: 300 PSTARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREP 346
P T + G + E P + T + A + D EP
Sbjct: 1880 PVTKNNKGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEP 1926
Score = 38.5 bits (88), Expect = 0.010
Identities = 45/196 (22%), Positives = 63/196 (32%), Gaps = 23/196 (11%)
Query: 106 PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLA 165
P P P + G P PP +P+ + P
Sbjct: 1363 PSSKEGPTPPAATPSHK-----GGPAMTPPSPKRGPAIPSPKGDPTSP------------ 1405
Query: 166 SARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPA 225
A +P APA + R G L PP + L ++P + P+
Sbjct: 1406 -AVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGD 1464
Query: 226 PCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDS 285
P LP PP+ + P A T + A A TPA G P I E +
Sbjct: 1465 PTLPAVTPPSPKEPPAPKQVATSSSPKKAPA-----TPAPMGAPTLPAVIPSSPKEVPAT 1519
Query: 286 LASQTSPPAPPAPVPS 301
+S+ P AP A + S
Sbjct: 1520 PSSRRDPIAPTATLLS 1535
Score = 38.1 bits (87), Expect = 0.013
Identities = 50/202 (24%), Positives = 68/202 (33%), Gaps = 26/202 (12%)
Query: 174 PPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAP 233
PP+P + T L P + PP +P +P V ++LP P P P P
Sbjct: 858 PPSPKGAPTPSAVTPLSPKGVTLPPKETP----TPSV------VNLPFPKEGPATPAPKQ 907
Query: 234 PAARTPSAHSPAHTHFTLTL-----------AEAHTRALTPARGGGEGDPGPIVGGRPEN 282
A + ++ SP T A A P+ GG P P P
Sbjct: 908 APALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPA 967
Query: 283 EDSLASQTSPPAPP---APVPSTARARSP--GARRGARELAPRAGRRRQPSGRTSWRRRA 337
+ + P P AP P A SP G + + AP PS + S
Sbjct: 968 ATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATP 1027
Query: 338 RREQRDREPAVCGAWPRGSHAA 359
+ PA P+GS AA
Sbjct: 1028 FPKGASTPPAATPPSPKGSPAA 1049
Score = 30.8 bits (68), Expect = 2.0
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 224 PAPCLPPPAPPA-ARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPEN 282
P P LPPP PA + P + + + F A T P G P+ G PE
Sbjct: 41 PGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQSSSGTALPL-GTAPEA 99
Query: 283 EDSLASQTSPPAPPAPVPSTARARSPGARRGARELAPRA 321
L + PP PA + + +P + AP A
Sbjct: 100 PTFLPNLIGPPISPAALALASPMIAPTLKGTPSSSAPLA 138
Score = 30.4 bits (67), Expect = 2.7
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 220 PAPSPAPCLPPPAPPAARTPSAHSP-AHTHFTLTLAEAHTRALT--PARGGGEGDPGP-- 274
PA + +P PP+P A TPSA +P + TL E T ++ P G P P
Sbjct: 850 PATTHSPT--PPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQ 907
Query: 275 -----IVGGRPENEDSLASQTSPPAPPAP--VPSTARARSPGARRGARELAPR 320
+ P+ + + PA P+P P+ A P + G +P+
Sbjct: 908 APALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPK 960
Score = 28.9 bits (63), Expect = 7.7
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 6/115 (5%)
Query: 199 MLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHT 258
+++P + P ++ A TL +P P P P + P A
Sbjct: 484 VMAPVAPKEPSTQV-ATTLRIPVSPPLPD-PEDLKNLPSSVLVKFPTQKDLQTVPASLEG 541
Query: 259 RALTPARGG--GEGDPG--PIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPG 309
+PA+ G + DP P+V P+N S S +S P P +T +S G
Sbjct: 542 APFSPAQAGLTTKKDPTVLPLVQAAPKNSPSFQSTSSSPEIPLSPEATLAKKSLG 596
Score = 28.9 bits (63), Expect = 7.7
Identities = 54/260 (20%), Positives = 81/260 (31%), Gaps = 40/260 (15%)
Query: 86 PGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPA 145
P A A + P++ A P AP P + P RR P A L
Sbjct: 1478 PPAPKQVATSSSPKKAP-ATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSK 1536
Query: 146 SEAPGLRPDSARTRLRLRLASARLPRGLPP---APAAGLWRAGCTRLRPLLLQPPPMLSP 202
L P A + + S + +P APA + + PP ++P
Sbjct: 1537 KTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASS---------PPAVTP 1587
Query: 203 GL---AQSPGVELHARTLSLPAPSPAPCLP----------------------PPAPPAAR 237
A SP L ++ P+P AP P PP P++
Sbjct: 1588 STYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSL 1647
Query: 238 TPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQT--SPPAP 295
S SPA + PA+ G +V PE+ + + T P
Sbjct: 1648 KDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTK 1707
Query: 296 PAPVPSTARARSPGARRGAR 315
+ S P A+ G++
Sbjct: 1708 KSSATSPPICPDPSAKNGSK 1727
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 50.8 bits (120), Expect = 2e-06
Identities = 57/184 (30%), Positives = 65/184 (35%), Gaps = 31/184 (16%)
Query: 135 PRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLL 194
PRL A GL +S A R S+ L R P PP PAAG GC L +
Sbjct: 57 PRLGAG-GLASSAATAQRGPSSSATL------PRPPHHAPPGPAAGAPPPGCATLPRM-- 107
Query: 195 QPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPA--ARTPSAHSPAHTHFTLT 252
P P L + P LP P PA PPP PA A+ P P H T
Sbjct: 108 PPDPYLQETRFEGP----------LPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGT 157
Query: 253 L------AEAHTRALTPARGGGEGDP--GPIVGGRPENEDSLASQTSPPAPPAPVPSTAR 304
L A + L P P P GG P + T PP P P +
Sbjct: 158 LPLGGYVAPGYPLQLQPCTAYVPVYPVGTPYAGGTPGGTG--VTSTLPPPPQGPGLALLE 215
Query: 305 ARSP 308
R P
Sbjct: 216 PRRP 219
Score = 37.7 bits (86), Expect = 0.017
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 220 PAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGR 279
P +P P PPAPP PS+H H H+ ++ T L GG
Sbjct: 19 PYNAPQPPAEPPAPPPQAAPSSHHHHHHHY----HQSGTATLPRLGAGGLASSAATAQRG 74
Query: 280 PENEDSL--ASQTSPPAPPAPVPSTARARSP 308
P + +L +PP P A P A P
Sbjct: 75 PSSSATLPRPPHHAPPGPAAGAPPPGCATLP 105
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 50.4 bits (119), Expect = 2e-06
Identities = 72/254 (28%), Positives = 87/254 (34%), Gaps = 20/254 (7%)
Query: 75 RACPGRGRGGLPGAAALGAGAQQ-PRRRRLAQPP---GSRAPLQVGGAPRRRAHL--TGG 128
RA G GA +GA P RRL + P +P GAPR R G
Sbjct: 56 RAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAPRARGSCGREPG 115
Query: 129 PPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTR 188
P RRR P A A+ A R S L + S P P P R
Sbjct: 116 PRRRRAPSSAGKRPAAAARAAPPRQRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCH 175
Query: 189 LRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTH 248
R L PP L P L + L A APS + P P R + SPA
Sbjct: 176 CRRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAPSLS-----PFPRRCRRRAERSPAGHG 230
Query: 249 FTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSP 308
L + + + AR G+ + G R + SPP P P A
Sbjct: 231 LPLPRSLSRGGEVVGARRRRGGEERRVRGRRQG-----CALGSPPIPAGP----AAPGRA 281
Query: 309 GARRGARELAPRAG 322
G RR AR+ R G
Sbjct: 282 GERRAARQWRKRGG 295
Score = 37.0 bits (84), Expect = 0.028
Identities = 62/245 (25%), Positives = 77/245 (31%), Gaps = 49/245 (20%)
Query: 19 LGPSAYSKIPPRLPIRMTWG-----IPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGR 73
L P S PPRL + P ++ RSPA + R +G +VG
Sbjct: 187 LQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGA 246
Query: 74 RRACPG---RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRA----HLT 126
RR G R RG G A L PP P G A RRA
Sbjct: 247 RRRRGGEERRVRGRRQGCA-------------LGSPPIPAGPAAPGRAGERRAARQWRKR 293
Query: 127 GGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGC 186
GG P P A G+ P R S R P+PA W+ G
Sbjct: 294 GGGPGVSPREGAQGEGVRGGVTPRARGSSTCLR---------------PSPAT--WQGGA 336
Query: 187 TRLRPLLLQPPPMLSPG--LAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSP 244
R + P + +P + PG T S P P AP R +
Sbjct: 337 P-YRAIFAAGPRLSAPSAEAEEVPG----GHTASNPTYEPLSSRRTKAPSEGRDSPSSPA 391
Query: 245 AHTHF 249
TH+
Sbjct: 392 TSTHY 396
Score = 30.8 bits (68), Expect = 2.0
Identities = 45/145 (31%), Positives = 52/145 (35%), Gaps = 24/145 (16%)
Query: 221 APSPAPC-----LPPPAPPAARTPSAHS----PAHTHFTLTLAEAHTRALTPARGGG--- 268
AP PA C PPP PA + P + A T A AL +R G
Sbjct: 30 APGPAVCSPTARAPPPILPAPQRPPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVP 89
Query: 269 ----EGDPGPIVGGRPENEDSLASQTSPPAPPAP------VPSTARARSPGARRGARELA 318
E PGP G P S + P AP + ARA P R AR L
Sbjct: 90 LTFREASPGP-APGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSLARCLP 148
Query: 319 PRAGRRRQPS-GRTSWRRRARREQR 342
G +PS G + RR RR R
Sbjct: 149 RSVGSCVRPSVGPSLPRRHCRRHCR 173
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 50.1 bits (118), Expect = 3e-06
Identities = 54/187 (28%), Positives = 69/187 (36%), Gaps = 9/187 (4%)
Query: 129 PPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPA--PAAGLWRAGC 186
PP PP A A PA+ P A L A+ R P PPA PA A
Sbjct: 26 PPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAAVRPPVAGPPATAPAVVCPAAAG 85
Query: 187 TRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPS---PAPCLPPPAPPAARTPSAHS 243
L P ++P + P L A + + AP+ PA P A A +P+A +
Sbjct: 86 PSAASLRAANPLAVAPAAVRRPAATLGAASPAAVAPAAVCPAAASPSAASLCAASPTAAA 145
Query: 244 PAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTA 303
PA + A A A+ PA V P ++A S PA PAP
Sbjct: 146 PA----AASPAAAAPLAVNPAAAAPAAACVQSVAESPATPLAIAQPVSSPAAPAPCAVPP 201
Query: 304 RARSPGA 310
A P A
Sbjct: 202 LAAEPTA 208
Score = 30.0 bits (66), Expect = 3.5
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 220 PAPSPAPCLPPPAPPAARTPSAHSPAHT-HFTLTLAEAHTRALTPARGGGEGDPGPIVGG 278
PA +PA PP A P A P+ PA +L A+ PA P V G
Sbjct: 17 PAAAPAAVRPPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAA------VRPPVAG 70
Query: 279 RPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARELAPRAGRR 324
P ++ PA P ++ RA +P A +AP A RR
Sbjct: 71 PPATAPAVVC----PAAAGPSAASLRAANPLA------VAPAAVRR 106
>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
sapiens]
Length = 496
Score = 50.1 bits (118), Expect = 3e-06
Identities = 84/303 (27%), Positives = 103/303 (33%), Gaps = 38/303 (12%)
Query: 28 PPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGG-LP 86
P P+R G R G +A P + R R G G RR R R LP
Sbjct: 40 PSSKPVR---GAERALGSAQAQRHPPPLPTCALQRVDRLGVAGAGGRRCRACRARTSVLP 96
Query: 87 GAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPAS 146
G A+ G Q R P R P+ R L G R P A + PA
Sbjct: 97 GLRAVRRGQGQAAGRVCVAPDSPRLPVP-------RGDLKGRGREIRSPAAAPSRSSPAQ 149
Query: 147 EAPGLRPDSARTRLRLRLASARLPRGLPP----APAAGLWRAGCTRLRPLLLQPP----P 198
P RP RL L G P P W+ G R + P
Sbjct: 150 TRPAGRPQQP---ARLALGERSWQEGRPVCTRFGPLRPGWQDGHAPSRDGASRTPSGTED 206
Query: 199 MLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHT 258
L PG P + H+ T + P+ +P P PP R P+ P L +A +
Sbjct: 207 QLYPGTLPFPPLWPHSTTTTSPS---SPLFWSPLPP--RLPTQRLPQVPPLPLPQIQALS 261
Query: 259 RA-LTPARGGGEGDPGP-IVGGRPENEDSLASQTSPPAP------PAPVPSTARARSPGA 310
A + G GE PGP + G + SL PP P P VP TA SP
Sbjct: 262 SAWVVLPPGKGEEGPGPELHSGCLDGLRSLFE--GPPCPYPGAWIPFQVPGTAHP-SPAT 318
Query: 311 RRG 313
G
Sbjct: 319 PSG 321
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 49.7 bits (117), Expect = 4e-06
Identities = 89/306 (29%), Positives = 108/306 (35%), Gaps = 54/306 (17%)
Query: 81 GRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPR---- 136
G GG G G G P L PP S P + A T PP PP+
Sbjct: 644 GAGGPSGEPFSGLGDLSP----LLFPPLSAPPTLIALNSALLA-ATLDPPSGTPPQPCVL 698
Query: 137 LAAAHGLPASEAPGLRPDSARTRL-RLRLASARLPRGLPPAPAAGLWR-----AGCTRLR 190
A G P S D + L + S R P+ L P A L
Sbjct: 699 SAPQPGPPTSSVTTATTDPGASSLGKAPSNSGRPPQLLSPLLGASLLGDLSSLTSSPGAL 758
Query: 191 PLLLQPP-PMLSP--GLAQSPG-------------VELHARTLSLPAPSP-APCLPPPAP 233
P LLQPP P+LS GL PG + ++L +P P APCLPP +P
Sbjct: 759 PSLLQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSLQIPPEQPEAPCLPPESP 818
Query: 234 PAARTPSAHSPAHTHFTLTLAEAHTRALTPA----RGGGEGDPGPIVGGRPENEDSLASQ 289
+A P P + LA H P G G G G GG L
Sbjct: 819 ASALEPEPARPPLS----ALAPPHGSPDPPVPELLTGRGSGKRGRRGGG------GLRGI 868
Query: 290 TSPPAPPAPVPSTARARSPGARRGARELAPRAGRRRQPSGRTSWR-RRARREQRDREPAV 348
P AR R PG+RR LA + G R +G+ RR Q + E A
Sbjct: 869 NGEARP-------ARGRKPGSRREPGRLALKWGTRGGFNGQMERSPRRTHHWQHNGELAE 921
Query: 349 CGAWPR 354
GA P+
Sbjct: 922 GGAEPK 927
Score = 47.4 bits (111), Expect = 2e-05
Identities = 72/250 (28%), Positives = 91/250 (36%), Gaps = 50/250 (20%)
Query: 106 PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPG--LRPDSARTRLRLR 163
PP +R P +V L GGP P + + P PG P A
Sbjct: 142 PPSARPPCRVPPT----TPLNGGPGSLPPEPPSVSQAFPTLAGPGGLFPPRLADPVPSGG 197
Query: 164 LASAR-LPRGL------PPAPAAGL------WRAGC-TRLRPLLLQPPPMLSPGLAQSPG 209
+S R LPRG PP PA L W A + L P L PP +P + SP
Sbjct: 198 SSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPP--APHASSSP- 254
Query: 210 VELHARTLSLPAPSPAPCL-------PPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALT 262
PS P PPP PP+ P+ PA + ++ A H +
Sbjct: 255 ------------PSDPPLFHCSDALTPPPLPPSNNLPAHPGPA-SQPPVSSATMHLPLVL 301
Query: 263 PARGGGEGDPGPIVGGRPENEDSLASQTSPPA-PPAPVPSTARARSPGAR----RGAREL 317
GG GP G P SL S + PP P PST + R P A+ + L
Sbjct: 302 GPLGGAPTVEGP--GAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSL 359
Query: 318 APRAGRRRQP 327
P R R+P
Sbjct: 360 RPSQRRPRRP 369
Score = 42.7 bits (99), Expect = 5e-04
Identities = 65/239 (27%), Positives = 83/239 (34%), Gaps = 35/239 (14%)
Query: 104 AQPPGSRAPL---QVGGAPRRRAHLTGGPPRRRPPRLAAAHGLP-ASEAPGLRPDSARTR 159
A P S+AP+ V +P + GP PP LA P S GL A
Sbjct: 477 APPAASKAPVVPSPVLQSPSEGLGMGAGPACPLPP-LAGGEAFPFPSPEQGLALSGAGFP 535
Query: 160 LRLRLASARLPRGLPPAPAA------GLWRAGCTRLRPLLLQPPP-----MLSPGLAQSP 208
L L G PP G+ G + P L PPP L+PG + P
Sbjct: 536 GMLGALPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGPGPPLAPGEPEGP 595
Query: 209 GVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGG 268
+ + SL P P+ LPPP+ P + ++ P AL P G G
Sbjct: 596 SLLV----ASLLPPPPSDLLPPPSAPPSNLLASFLP-------------LLALGPTAGDG 638
Query: 269 EGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARELAPRAGRRRQP 327
EG G E L + PP P T A + A L P +G QP
Sbjct: 639 EGSAEGAGGPSGEPFSGLGDLSPLLFPPLSAPPTLIALNSALL--AATLDPPSGTPPQP 695
Score = 41.6 bits (96), Expect = 0.001
Identities = 51/202 (25%), Positives = 68/202 (33%), Gaps = 51/202 (25%)
Query: 109 SRAPLQVGGAPRRRAHLTGGPPRR----------RPPRLAAAHGLPASEAPGLRPDSART 158
S P +G P H + PP PP L ++ LPA P +P +
Sbjct: 236 SLVPSDLGSPPA--PHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSSA 293
Query: 159 RLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLS 218
+ L L L G P G PP L+ L LS
Sbjct: 294 TMHLPLVLGPLG-GAPTVEGPGA---------------PPFLASSL------------LS 325
Query: 219 LPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGG 278
A + P LPPP+ R P A +P+ +H + +L + R P P V
Sbjct: 326 AAAKAQHPPLPPPSTLQGRRPRAQAPSASH-SSSLRPSQRRPRRP----------PTVFR 374
Query: 279 RPENEDSLASQTSPPAPPAPVP 300
E + S P PAPVP
Sbjct: 375 LLEGRGPQTPRRSRPRAPAPVP 396
Score = 35.8 bits (81), Expect = 0.063
Identities = 46/160 (28%), Positives = 56/160 (35%), Gaps = 19/160 (11%)
Query: 91 LGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGG-----PPRRRPPRLAAAHGLPA 145
L G QP L PPG P G P + L P PP A L A
Sbjct: 564 LTGGGGQPPPEPLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLA 623
Query: 146 SEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLA 205
S P L A P G P +G L PLL PP+ +P
Sbjct: 624 SFLPLLALGPTAGDGEGSAEGAGGPSGEP--------FSGLGDLSPLLF--PPLSAPPTL 673
Query: 206 QSPGVELHARTLSLPAPS-PAPCL---PPPAPPAARTPSA 241
+ L A TL P+ + P PC+ P P PP + +A
Sbjct: 674 IALNSALLAATLDPPSGTPPQPCVLSAPQPGPPTSSVTTA 713
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 49.3 bits (116), Expect = 6e-06
Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 43/222 (19%)
Query: 95 AQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPD 154
++QP + LAQPPG VG P ++ P +PP P ++ PGL+
Sbjct: 383 SEQPGPKALAQPPG------VGKTPAQQ------PGPAKPPTQQVGTPKPLAQQPGLQ-S 429
Query: 155 SARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHA 214
A+ + + G PA AG + + P PP PG A+ P +
Sbjct: 430 PAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPT---KPPSQLPGPAKPPPQQ--- 483
Query: 215 RTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGP 274
P P PPP P + P + P T P + G P P
Sbjct: 484 ---------PGPAKPPPQQPGSAKPPSQQPGSTK-------------PPPQQPGPAKPSP 521
Query: 275 IVGG--RPENEDSLASQTSPPAPPAPVPSTARARSPGARRGA 314
G +P ++ +++ S P PS ++ P ++ G+
Sbjct: 522 QQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGS 563
Score = 42.7 bits (99), Expect = 5e-04
Identities = 68/302 (22%), Positives = 102/302 (33%), Gaps = 81/302 (26%)
Query: 39 IPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRG---RGGLPGAAALGAGA 95
+ +E G + + P Q + ++QG PGR + G P + + +
Sbjct: 196 VQKEQGKPEGIIKPPLQQQPPKPIPKQQG----------PGRDPLQQDGTPKSIS----S 241
Query: 96 QQPRRRRLAQPPGSRAPLQ------------------VGGAPRRRAHLTGG-------PP 130
QQP + + +QPPG+ P+Q ++A + G P
Sbjct: 242 QQPEKIK-SQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPS 300
Query: 131 RRRPPRLAAAHGLPASEAPG---LRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT 187
+PP G P ++ PG +P A+ PPA +GL
Sbjct: 301 PSKPPIQQPTPGKPPAQQPGHEKSQPGPAK----------------PPAQPSGL------ 338
Query: 188 RLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHT 247
+PL QP + P Q PG T PA P PP + PS+ P
Sbjct: 339 -TKPLAQQPGTVKPP--VQPPG------TTKPPAQPLGPAKPPAQQTGSEKPSSEQPG-- 387
Query: 248 HFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARS 307
LA+ TPA+ G P G P+ SP P P + +
Sbjct: 388 --PKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPG 445
Query: 308 PG 309
PG
Sbjct: 446 PG 447
Score = 33.5 bits (75), Expect = 0.31
Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 45/214 (21%)
Query: 130 PRRRPPRLAAAHGLPASEAPGLR----------PDSARTRLRLRLASARLPRGLPPAPAA 179
PR +H P+SE+ G + P A+T++ + + +P+G P P
Sbjct: 822 PRPASDSKIISHPGPSSESKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSPTPPGP 881
Query: 180 GLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTP 239
RP Q P +P + P + +L+L + + AP P P T
Sbjct: 882 ----------RPTAGQTVP--TPQQSPKPQEQSRRFSLNLGSITDAPKSQPTTPQETVTG 929
Query: 240 SAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQT--------- 290
+ F+ +A T + G GP G P + SQ
Sbjct: 930 KLFGFGASIFS----QASNLISTAGQPGPHSQSGP---GAPMKQAPAPSQPPTSQGPPKS 982
Query: 291 ---SPPAPPAPVPSTARARSPGARRGARELAPRA 321
+PPAP +P ++P A + L P+A
Sbjct: 983 TGQAPPAPAKSIPVKKETKAPAAEK----LEPKA 1012
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 206 QSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHF---TLTLAEAHTRALT 262
+S +++ A+ P P P P PPP PP P SP T LT+A T A
Sbjct: 2395 RSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASPVTTATP 2454
Query: 263 PARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAP--VPS 301
+ ++ + + PP PP P +PS
Sbjct: 2455 LFDAVTTLETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPS 2495
Score = 32.0 bits (71), Expect = 0.91
Identities = 47/217 (21%), Positives = 66/217 (30%), Gaps = 64/217 (29%)
Query: 93 AGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLR 152
A A P + + QP + P Q G + A TG P + P +L PA P
Sbjct: 431 AKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTG--PTKPPSQLPG----PAKPPP--- 481
Query: 153 PDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVEL 212
P PA +PPP PG A+ P +
Sbjct: 482 --------------------QQPGPA----------------KPPPQ-QPGSAKPPSQQ- 503
Query: 213 HARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDP 272
+ P P P P P P + P + P A+ + +PA+ +
Sbjct: 504 -PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGS-------AKPSAQQPSPAKPSAQQST 555
Query: 273 GPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPG 309
P+ S P PP PS + S G
Sbjct: 556 KPV---------SQTGSGKPLQPPTVSPSAKQPPSQG 583
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 49.3 bits (116), Expect = 6e-06
Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 43/222 (19%)
Query: 95 AQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPD 154
++QP + LAQPPG VG P ++ P +PP P ++ PGL+
Sbjct: 383 SEQPGPKALAQPPG------VGKTPAQQ------PGPAKPPTQQVGTPKPLAQQPGLQ-S 429
Query: 155 SARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHA 214
A+ + + G PA AG + + P PP PG A+ P +
Sbjct: 430 PAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPT---KPPSQLPGPAKPPPQQ--- 483
Query: 215 RTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGP 274
P P PPP P + P + P T P + G P P
Sbjct: 484 ---------PGPAKPPPQQPGSAKPPSQQPGSTK-------------PPPQQPGPAKPSP 521
Query: 275 IVGG--RPENEDSLASQTSPPAPPAPVPSTARARSPGARRGA 314
G +P ++ +++ S P PS ++ P ++ G+
Sbjct: 522 QQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGS 563
Score = 42.7 bits (99), Expect = 5e-04
Identities = 68/302 (22%), Positives = 102/302 (33%), Gaps = 81/302 (26%)
Query: 39 IPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRG---RGGLPGAAALGAGA 95
+ +E G + + P Q + ++QG PGR + G P + + +
Sbjct: 196 VQKEQGKPEGIIKPPLQQQPPKPIPKQQG----------PGRDPLQQDGTPKSIS----S 241
Query: 96 QQPRRRRLAQPPGSRAPLQ------------------VGGAPRRRAHLTGG-------PP 130
QQP + + +QPPG+ P+Q ++A + G P
Sbjct: 242 QQPEKIK-SQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPS 300
Query: 131 RRRPPRLAAAHGLPASEAPG---LRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCT 187
+PP G P ++ PG +P A+ PPA +GL
Sbjct: 301 PSKPPIQQPTPGKPPAQQPGHEKSQPGPAK----------------PPAQPSGL------ 338
Query: 188 RLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHT 247
+PL QP + P Q PG T PA P PP + PS+ P
Sbjct: 339 -TKPLAQQPGTVKPP--VQPPG------TTKPPAQPLGPAKPPAQQTGSEKPSSEQPG-- 387
Query: 248 HFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARS 307
LA+ TPA+ G P G P+ SP P P + +
Sbjct: 388 --PKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPG 445
Query: 308 PG 309
PG
Sbjct: 446 PG 447
Score = 33.5 bits (75), Expect = 0.31
Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 45/214 (21%)
Query: 130 PRRRPPRLAAAHGLPASEAPGLR----------PDSARTRLRLRLASARLPRGLPPAPAA 179
PR +H P+SE+ G + P A+T++ + + +P+G P P
Sbjct: 822 PRPASDSKIISHPGPSSESKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSPTPPGP 881
Query: 180 GLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTP 239
RP Q P +P + P + +L+L + + AP P P T
Sbjct: 882 ----------RPTAGQTVP--TPQQSPKPQEQSRRFSLNLGSITDAPKSQPTTPQETVTG 929
Query: 240 SAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQT--------- 290
+ F+ +A T + G GP G P + SQ
Sbjct: 930 KLFGFGASIFS----QASNLISTAGQPGPHSQSGP---GAPMKQAPAPSQPPTSQGPPKS 982
Query: 291 ---SPPAPPAPVPSTARARSPGARRGARELAPRA 321
+PPAP +P ++P A + L P+A
Sbjct: 983 TGQAPPAPAKSIPVKKETKAPAAEK----LEPKA 1012
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 206 QSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHF---TLTLAEAHTRALT 262
+S +++ A+ P P P P PPP PP P SP T LT+A T A
Sbjct: 2395 RSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLTVASPVTTATP 2454
Query: 263 PARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAP--VPS 301
+ ++ + + PP PP P +PS
Sbjct: 2455 LFDAVTTLETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPS 2495
Score = 32.0 bits (71), Expect = 0.91
Identities = 47/217 (21%), Positives = 66/217 (30%), Gaps = 64/217 (29%)
Query: 93 AGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLR 152
A A P + + QP + P Q G + A TG P + P +L PA P
Sbjct: 431 AKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTG--PTKPPSQLPG----PAKPPP--- 481
Query: 153 PDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVEL 212
P PA +PPP PG A+ P +
Sbjct: 482 --------------------QQPGPA----------------KPPPQ-QPGSAKPPSQQ- 503
Query: 213 HARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDP 272
+ P P P P P P + P + P A+ + +PA+ +
Sbjct: 504 -PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGS-------AKPSAQQPSPAKPSAQQST 555
Query: 273 GPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPG 309
P+ S P PP PS + S G
Sbjct: 556 KPV---------SQTGSGKPLQPPTVSPSAKQPPSQG 583
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 48.9 bits (115), Expect = 7e-06
Identities = 61/231 (26%), Positives = 74/231 (32%), Gaps = 44/231 (19%)
Query: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAA 139
RG G PG L +P + P G PR LTG P R PP +
Sbjct: 718 RGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQ----GPRGEQGLTGMPGIRGPPGPSG 773
Query: 140 AHGLPASEAP----GLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLR----- 190
G P P GL R ++ G P AP + G + L
Sbjct: 774 DPGKPGLTGPQGPQGLPGTPGRPGIK----------GEPGAPGKIVTSEGSSMLTVPGPP 823
Query: 191 --PLLLQPP-PMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHT 247
P + PP P +PG A G+ H L+L P P P PP P P
Sbjct: 824 GPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPP--GPRGPPGPSIPGPPGPRG- 880
Query: 248 HFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAP 298
P G G PGP +E L+ PP PP P
Sbjct: 881 ---------------PPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGP 916
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 48.9 bits (115), Expect = 7e-06
Identities = 71/252 (28%), Positives = 96/252 (38%), Gaps = 44/252 (17%)
Query: 107 PGSRAPLQVGGAPRRRAHLTG--------GPPRRRPPRLAAAHGLPASEAPGLRPDSART 158
P S P G P +L+G GP + PR H +P + P L P A T
Sbjct: 772 PPSPFPSSTGPGPH---YLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPALYPAPAYT 828
Query: 159 RLRLRLASARLPR-GLPPAPAAGLWRAGCTRLRPLLLQPPPMLS-PGLA----------Q 206
L L P+ G+ +P G+ A + L PPP S P LA
Sbjct: 829 P-ELGLVPRSSPQHGVVSSPYVGVGPA--PPVAGLPSAPPPQFSGPELAMAVRPATTTVD 885
Query: 207 SPGVELHARTLSLPAPSPA---PCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTP 263
S + + T P P+PA PC P P P TP + PA + A+ H + P
Sbjct: 886 SIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPLPTPYTY-PAGAKQPIP-AQHHFSSGIP 943
Query: 264 ARGGGEGDPGPIVGGR----PENEDSLASQTSPPAPPAPV--PSTARARSPG--ARRGAR 315
A G P P +G + P+ S A PP P P+ P ++PG +
Sbjct: 944 A-----GFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPY 998
Query: 316 ELAPRAGRRRQP 327
AP+ G QP
Sbjct: 999 PYAPQPGVLGQP 1010
Score = 47.8 bits (112), Expect = 2e-05
Identities = 71/245 (28%), Positives = 89/245 (36%), Gaps = 63/245 (25%)
Query: 85 LPGAAALGAGAQQP----RRRRLAQPPGSRAPLQVGGAPRRR-----AHLTGGPPRRRPP 135
LP AGA+QP P G AP ++G P+ + G P ++P
Sbjct: 918 LPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAP-RIGPQPQPHPQPHPSQAFGPQPPQQPL 976
Query: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQ 195
L H P +APGL P + P AP G+ L Q
Sbjct: 977 PLQHPHLFPP-QAPGLLPPQSP---------------YPYAPQPGV-----------LGQ 1009
Query: 196 PPP----MLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTL 251
PPP L PG AQ P L A + +LP PSP P PP P A+ PA +
Sbjct: 1010 PPPPLHTQLYPGPAQDP---LPAHSGALPFPSPGPPQPP------HPPLAYGPAPS---- 1056
Query: 252 TLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPG-- 309
TR + P + GP G+ L +P P PVP A P
Sbjct: 1057 ------TRPMGP-QAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPC 1109
Query: 310 ARRGA 314
RRGA
Sbjct: 1110 LRRGA 1114
Score = 38.1 bits (87), Expect = 0.013
Identities = 56/214 (26%), Positives = 74/214 (34%), Gaps = 34/214 (15%)
Query: 88 AAALGAGAQQPRRRRLAQPPGSRAPLQVGGA-------PRRRAHLTGGPPRRRPPRLAAA 140
++ + AG PR QP P Q G P + HL P + P L
Sbjct: 939 SSGIPAGFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLF---PPQAPGLLPPQ 995
Query: 141 HGLPASEAPGLR---PDSARTRLRLRLASARLPR----------GLPPAPAAGLWRAGCT 187
P + PG+ P T+L A LP G P P L
Sbjct: 996 SPYPYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAP 1055
Query: 188 RLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHT 247
RP+ Q P+ G + + + PAPSP P PP PPAA P
Sbjct: 1056 STRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPC------ 1109
Query: 248 HFTLTLAEAHTRALTP-ARGGGEGDPGPIVGGRP 280
A A + +P ++ GG PG GG+P
Sbjct: 1110 -LRRGAAAADLLSSSPESQHGGTQSPG---GGQP 1139
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 48.9 bits (115), Expect = 7e-06
Identities = 99/369 (26%), Positives = 128/369 (34%), Gaps = 85/369 (23%)
Query: 20 GPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRR----- 74
G SA S +P P + G+ + + ++ RSP+ TRL R G +R
Sbjct: 2013 GSSAESALPRAGPRELGRGLHKAASVELPQRRSPSP-GATRLARGGLGEGEYAQRLQALR 2071
Query: 75 ----RACPGRGR-GGLPGAA--ALGAGAQQPRRRRLA--------QPPGSRAPLQV---- 115
R P G+ GL G +LG A+ PR R A QPP LQ
Sbjct: 2072 QRLLRGGPEDGKVSGLRGPLLESLGGRARDPRMARAASSEAAPHHQPPLENRGLQKSSSF 2131
Query: 116 --GGAPRRRAHLTGGPPRRRP------------PRLAA-AHGLPASEAPGLRPDSARTRL 160
G A R H G P P P L+A + P+S A P + +
Sbjct: 2132 SQGEAEPRGRHRRAGAPLEIPVARLGARRLQESPSLSALSEAQPSSPARPSAPKPSTPKS 2191
Query: 161 RLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQ---PPPMLSPGLA----------QS 207
A+ PPAP +A R P+ PPP LA QS
Sbjct: 2192 AEPSATTPSDAPQPPAPQPAQDKAPEPRPEPVRASKPAPPPQALQTLALPLTPYAQIIQS 2251
Query: 208 PGVELHARTLS----LPAPSPAP--------CLPPPAPPAARTPSAHSPAHTHFTLTLAE 255
+ HA+ S P P P PPP P R PSA P LAE
Sbjct: 2252 LQLSGHAQGPSQGPAAPPSEPKPHAAVFARVASPPPGAPEKRVPSAGGPP------VLAE 2305
Query: 256 AHTRALTPARGGGEGDPGPIVGGRPENEDSLA--------SQTSPPAPPAPVPSTARARS 307
P R PG + EN +S A S+ SP + + S +R+
Sbjct: 2306 KARVPTVPPR------PGSSLSSSIENLESEAVFEAKFKRSRESPLSLGLRLLSRSRSEE 2359
Query: 308 PGARRGARE 316
G RGA E
Sbjct: 2360 RGPFRGAEE 2368
Score = 35.4 bits (80), Expect = 0.083
Identities = 78/310 (25%), Positives = 104/310 (33%), Gaps = 41/310 (13%)
Query: 17 WALGPSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRA 76
W A S P+ WG P G + R+P ++ R +++ A + R R
Sbjct: 427 WVPLRKARSLEQPKSERGAPWGTP---GASQEELRAPGSVAERRRLFQQKAASLDERTRQ 483
Query: 77 CPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGS-RAPLQVGGAPRRRAHLTGGPPRRRPP 135
L A LG + R L + S RA LQ +PR PP
Sbjct: 484 RSPASDLELRFAQELGRIRRSTSREELVRSHESLRATLQRAPSPREPGE---------PP 534
Query: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQ 195
+ RP + +T + A+A+ PP+P++ + G RP
Sbjct: 535 LFS-------------RPSTPKTSRAVSPAAAQ-----PPSPSSAE-KPGDEPGRPRSRG 575
Query: 196 PPPMLSPGLAQSPGVELHARTLSLPAPSPA--PCLPPPAPPAARTPSAHSPAHTHFTLTL 253
P PG + P E+ R S A C P PPAA P A + A
Sbjct: 576 PAGRTEPG--EGPQQEVRRRDQFPLTRSRAIQECRSPVPPPAADPPEARTKAPPGRKREP 633
Query: 254 AEAHTRALTPARGGGEGDPGPIV----GGRPENEDSLASQTSPPAPPAPVPSTARARSPG 309
R L A G EG P PE E L P P ARS G
Sbjct: 634 PAQAVRFLPWATPGLEGAAVPQTLEKNRAGPEAEKRLRRGPEEDGPWGPWDRRG-ARSQG 692
Query: 310 ARRGARELAP 319
R AR +P
Sbjct: 693 KGRRARPTSP 702
Score = 35.0 bits (79), Expect = 0.11
Identities = 46/170 (27%), Positives = 56/170 (32%), Gaps = 31/170 (18%)
Query: 193 LLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLT 252
L + P L P LA R + P PS + LPPP+P + PA T T
Sbjct: 279 LRREEPDLQPQLASEA-----PRRPAQPPPSKSALLPPPSPRVGKRSPPGPPAQPAATPT 333
Query: 253 LAEAHTRALTPA----------RGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPST 302
H R P RG GP + G E S+ P A +
Sbjct: 334 --SPHRRTQEPVLPEDTTTEEKRGKKSKSSGPSLAGTAE------SRPQTPLSEASGRLS 385
Query: 303 ARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAW 352
A RSP RAG R + RR E+ D PA W
Sbjct: 386 ALGRSP--------RLVRAGSRILDKLQFFEERRRSLERSDSPPAPLRPW 427
Score = 33.9 bits (76), Expect = 0.24
Identities = 85/321 (26%), Positives = 107/321 (33%), Gaps = 74/321 (23%)
Query: 79 GRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLA 138
G G+ L A G G RRL PGS Q GA R HL G P R R
Sbjct: 189 GSGQTVLEQEAGSGGGT-----RRL---PGSPRQAQATGAGPR--HL-GVEPLVRASRAN 237
Query: 139 AAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPP 198
SE DS L ++ L RG + + ++G R P L P
Sbjct: 238 LVGASWGSE------DSLSVASDLYGSAFSLYRGRALSIHVSVPQSGLRREEPDL---QP 288
Query: 199 MLSPGLAQSPGVELHARTLSLPAPSP-APCLPPPAPPAARTPSAHSPAHTHFTLTLAEAH 257
L+ + P +++ LP PSP PP PPA + SP L E
Sbjct: 289 QLASEAPRRPAQPPPSKSALLPPPSPRVGKRSPPGPPAQPAATPTSPHRRTQEPVLPEDT 348
Query: 258 TRALTPARGGGEGDPGPIVGG----RP--------------------------------- 280
T RG GP + G RP
Sbjct: 349 TTE--EKRGKKSKSSGPSLAGTAESRPQTPLSEASGRLSALGRSPRLVRAGSRILDKLQF 406
Query: 281 --ENEDSLASQTSPPAPPAPVPSTARARS---PGARRGARELAPRAGRRR-QPSGRTSWR 334
E SL SPPAP P +ARS P + RGA P A + + G + R
Sbjct: 407 FEERRRSLERSDSPPAPLRPWVPLRKARSLEQPKSERGAPWGTPGASQEELRAPGSVAER 466
Query: 335 RRARREQ--------RDREPA 347
RR +++ R R PA
Sbjct: 467 RRLFQQKAASLDERTRQRSPA 487
Score = 32.7 bits (73), Expect = 0.54
Identities = 52/212 (24%), Positives = 77/212 (36%), Gaps = 30/212 (14%)
Query: 108 GSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASA 167
G++ V A + A +T P R RPP P S AP L P +A T + ++ +
Sbjct: 2770 GTQDSSAVPSAAHQEAPVTSRPARARPP------DSPTSLAPPLAP-AAPTPPSVTVSPS 2822
Query: 168 RLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSP----GLAQSPGVELHARTLSLPAPS 223
P PP+ A +A + PPP P GL + E + +
Sbjct: 2823 SPP--TPPSQALSSLKA---------VGPPPQTPPRRHRGLQAARPAEPTLPSTHVTPSE 2871
Query: 224 PAP-CLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGP------IV 276
P P L P A TP P + + + + A PA +P P +
Sbjct: 2872 PKPFVLDTGTPIPASTPQGVKPVSSSTPVYVVTSFVSA-PPAPEPPAPEPPPEPTKVTVQ 2930
Query: 277 GGRPENEDSLASQTSPPAPPAPVPSTARARSP 308
P E + +SP + P P +T R P
Sbjct: 2931 SLSPAKEVVSSPGSSPRSSPRPEGTTLRQGPP 2962
Score = 31.6 bits (70), Expect = 1.2
Identities = 52/224 (23%), Positives = 70/224 (31%), Gaps = 28/224 (12%)
Query: 97 QPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSA 156
+P R R P S AP AP + PP A + P P
Sbjct: 2790 RPARARPPDSPTSLAPPLAPAAPTPPSVTVSPSSPPTPPSQALSSLKAVGPPPQTPPRRH 2849
Query: 157 RTRLRLRLASARLPRG--LPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHA 214
R R A LP P P + G P+ P + P + +P + +
Sbjct: 2850 RGLQAARPAEPTLPSTHVTPSEPKPFVLDTGT----PIPASTPQGVKPVSSSTPVYVVTS 2905
Query: 215 RTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGP 274
+ PAP P PPP P + ++L+PA+ PG
Sbjct: 2906 FVSAPPAPEPPAPEPPPEP--------------------TKVTVQSLSPAK-EVVSSPGS 2944
Query: 275 IVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARELA 318
P E + Q P P + AR R G R RE A
Sbjct: 2945 SPRSSPRPEGTTLRQGPPQKPYTFLEEKARGRF-GVVRACRENA 2987
Score = 28.9 bits (63), Expect = 7.7
Identities = 62/254 (24%), Positives = 82/254 (32%), Gaps = 45/254 (17%)
Query: 110 RAPLQVGGAPRRRA-------HLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRL 162
RAP Q AP A G PRR R ++ S P P L
Sbjct: 1978 RAPSQDQEAPSPEALPSPGQEPAAGASPRRGELRRGSS---AESALPRAGPRELGRGLH- 2033
Query: 163 RLASARLPRGLPPAPAA----------GLWRAGCTRLRPLLLQPPP-------MLSPGLA 205
+ AS LP+ P+P A G + LR LL+ P + P L
Sbjct: 2034 KAASVELPQRRSPSPGATRLARGGLGEGEYAQRLQALRQRLLRGGPEDGKVSGLRGPLLE 2093
Query: 206 QSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPAR 265
G R + AP PP S+ + + EA R
Sbjct: 2094 SLGGRARDPRMARAASSEAAPHHQPPLENRGLQKSS--------SFSQGEAEPRGRHRRA 2145
Query: 266 GGGEGDPGPIVGGRPENED------SLASQTSPPAPPAPVPSTARARSPGARR---GARE 316
G P +G R E S A +SP P AP PST ++ P A +
Sbjct: 2146 GAPLEIPVARLGARRLQESPSLSALSEAQPSSPARPSAPKPSTPKSAEPSATTPSDAPQP 2205
Query: 317 LAPRAGRRRQPSGR 330
AP+ + + P R
Sbjct: 2206 PAPQPAQDKAPEPR 2219
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 48.5 bits (114), Expect = 9e-06
Identities = 76/331 (22%), Positives = 119/331 (35%), Gaps = 38/331 (11%)
Query: 40 PRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAG----- 94
P+ G+Q++ +RS + ++T RR R G+ RR R R + G+G
Sbjct: 1765 PKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRS 1824
Query: 95 ---------AQQPRRRRLAQPPGS--RAPLQVGGAPRRRAHLTGGP-----PRRRPPRLA 138
+ + RR R PP S R+ + AP +R+ P R R P ++
Sbjct: 1825 PARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS 1884
Query: 139 AAHGLPASEAPGLRPDSARTRLRLRLASARL---------PRGLPPAPAAGLWRAGCTRL 189
+ R +RT + R + +R R P R TR
Sbjct: 1885 RRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRR 1944
Query: 190 RPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHF 249
R PP +++P V R+ S +P P R S +
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPV-TRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTS---- 1999
Query: 250 TLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDS-LASQTSPPAPPAPVPSTARARSP 308
+T + +R R P + R + L + S P + +R+R+P
Sbjct: 2000 PVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTP 2059
Query: 309 GARRGAREL--APRAGRRRQPSGRTSWRRRA 337
RG R L +P A RRR SG +S R R+
Sbjct: 2060 RTARGKRSLTRSPPAIRRRSASGSSSDRSRS 2090
Score = 45.1 bits (105), Expect = 1e-04
Identities = 79/300 (26%), Positives = 103/300 (34%), Gaps = 77/300 (25%)
Query: 47 KAHTRSPAQYSQTRLR----RRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRR 102
++ +R+P + +R R RR + A GR R+ RGR P RR R
Sbjct: 494 RSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGR 553
Query: 103 LAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRL 162
SR+ + G R+ T G R R P A G S P AR R R
Sbjct: 554 ------SRSARR--GRSHSRSPATRGRSRSRTP---ARRGRSRSRTP------ARRRSRS 596
Query: 163 RLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAP 222
R + R R PA R G +R R +P +S RT S
Sbjct: 597 RTPTRRRSRSRTPA------RRGRSRSR----------TPARRRS-------RTRS---- 629
Query: 223 SPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPEN 282
P R + SPA +R+ TPAR G P GR +
Sbjct: 630 -----------PVRRRSRSRSPARR-------SGRSRSRTPARRGRSRSRTPARRGRSRS 671
Query: 283 EDSLASQTSPPAPPAPVPSTARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQR 342
PA +R+R+P R +R PR GR R S R +R QR
Sbjct: 672 RT-----------PARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQR 720
Score = 41.6 bits (96), Expect = 0.001
Identities = 80/329 (24%), Positives = 112/329 (34%), Gaps = 78/329 (23%)
Query: 46 QKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPG----RGRGGLPGAAALGAGAQQP--- 98
+++ +R+P R R A+ RRR+ G R R P A +G++ P
Sbjct: 2052 RRSRSRTPRTARGKRSLTRSPPAI---RRRSASGSSSDRSRSATPPATRNHSGSRTPPVA 2108
Query: 99 ----RRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLR-P 153
R ++P S PL +P L R P + G + PG R P
Sbjct: 2109 LNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSS---RTPMSVLQQAGGSMMDGPGPRIP 2165
Query: 154 DSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELH 213
D RT + A +R+ A L RP PP M + GLA
Sbjct: 2166 DHQRTSVPENHAQSRI--------ALALTAISLGTARP----PPSMSAAGLA-------- 2205
Query: 214 ARTLSLPAPSPAPCL--PPPAPPAARTPSAHSPAHTHFTLTLAEAHTRAL---------- 261
AR +PAP P L P A A+R P+A + A + LA A T A+
Sbjct: 2206 ARMSQVPAPVPLMSLRTAPAANLASRIPAASAAA-----MNLASARTPAIPTAVNLADSR 2260
Query: 262 TPARGGGEGDPGP-----------------------IVGGRPENEDSLASQTSPPAPPAP 298
TPA P + G R + S T PP
Sbjct: 2261 TPAAAAAMNLASPRTAVAPSAVNLADPRTPTAPAVNLAGARTPAALAALSLTGSGTPPTA 2320
Query: 299 VPSTARARSPGARRGARELAPRAGRRRQP 327
+ +R+P A A + PR+ P
Sbjct: 2321 ANYPSSSRTPQAPASANLVGPRSAHATAP 2349
Score = 40.4 bits (93), Expect = 0.003
Identities = 86/373 (23%), Positives = 123/373 (32%), Gaps = 48/373 (12%)
Query: 11 SSAFMTWALGPSAYSKIPPRLPIRMTW---------GIPRESGIQKAHTRSPA----QYS 57
S + W S + R P R W G R + ++H+RSPA S
Sbjct: 516 SRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRS 575
Query: 58 QTRLRRRRQGAVIVGRRRA-----CPGRGRGGLPGAAALGAGAQQPRRRRLAQPP----- 107
+T RR R + RRR+ R R P RRR + P
Sbjct: 576 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 635
Query: 108 GSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASA 167
SR+P + G R R G R R P A G S P R +R+R A
Sbjct: 636 RSRSPARRSGRSRSRTPARRGRSRSRTP---ARRGRSRSRTPARRSGRSRSR-----TPA 687
Query: 168 RLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPS-PAP 226
R R P G R+ R P S + +RT + S +P
Sbjct: 688 RRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSP 747
Query: 227 CLPPPAPPAARTPSAHSP---AHTHFTLTLAEAHT------RALTPARGGGEGDPGPIVG 277
+ + R+ S SP A + +L + + + ++ TP R G P
Sbjct: 748 EMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAK 807
Query: 278 GRPENEDSLASQTSPPAPPAPVPS----TARARSPGARRGARELAPRAGRRRQPSGRTSW 333
R S +S + PP + PS ++ + P + G PR G P
Sbjct: 808 SRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGT---PPRQGSITSPQANEQS 864
Query: 334 RRRARREQRDREP 346
RR + P
Sbjct: 865 VTPQRRSCFESSP 877
Score = 37.7 bits (86), Expect = 0.017
Identities = 78/308 (25%), Positives = 106/308 (34%), Gaps = 49/308 (15%)
Query: 99 RRRRLAQPPGSRAPLQVGGAP--RRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSA 156
RR R P +R + +P RRR+ P RR R + LP + P +
Sbjct: 1992 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSR-SRTPLLPRKRSRSRSPLAI 2050
Query: 157 RTRLRLRLA-SARLPRGLPPAPAAGLWRA--GCTRLRPLLLQPPPMLSPGLAQSPGVELH 213
R R R R +AR R L +P A R+ G + R PP + +++P V L+
Sbjct: 2051 RRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALN 2110
Query: 214 ARTLSL---PAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEG 270
+ +S P+ SP P R+P P L + L A G
Sbjct: 2111 SSRMSCFSRPSMSPTPL------DRCRSPGMLEP------LGSSRTPMSVLQQAGGSMMD 2158
Query: 271 DPGPIVGGR-----PENED-----------SLASQTSPPAP------------PAPVPST 302
PGP + PEN SL + PP+ PAPVP
Sbjct: 2159 GPGPRIPDHQRTSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLM 2218
Query: 303 ARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVCGAWPRGSHAAGAG 362
+ +P A +R A A S RT A R PA A S
Sbjct: 2219 SLRTAPAANLASRIPAASAAAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASPRTAVA 2278
Query: 363 WTAVAAGD 370
+AV D
Sbjct: 2279 PSAVNLAD 2286
Score = 37.0 bits (84), Expect = 0.028
Identities = 66/309 (21%), Positives = 114/309 (36%), Gaps = 23/309 (7%)
Query: 46 QKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQ 105
+ + +RSP + + +++ +G + P R R + ++ +R+ +
Sbjct: 176 ESSSSRSPTPKQKKKKKKKDRGR---RSESSSPRRERKKSSKKKKHRSESESKKRKHRSP 232
Query: 106 PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLA 165
P S+ + R R+ T P RR R +A +S+ R SA +
Sbjct: 233 TPKSKRKSKDKKRKRSRS-TTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTAL 291
Query: 166 SARLP------RGLPPAPAAGLWRAGCTRL-RPLLLQPPPMLSPGLAQSPGVELHARTLS 218
+ R P RG AP + G T RP + + + ++ +
Sbjct: 292 AGRSPSPASGRRGEGDAPFS---EPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSAT 348
Query: 219 LPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTP-ARGGGEGDPGPIVG 277
P+PSP P PPA A + L + P + D P
Sbjct: 349 RPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSP--- 405
Query: 278 GRPENEDSLA-SQTSPPAPPAPVPSTARARSPGARRGARELAPRAGRRRQ-PSGRTSWRR 335
P++ + L S +S +PP+P P T +R + + + AP G R+ S TS R
Sbjct: 406 --PKSPEKLPQSSSSESSPPSPQP-TKVSRHASSSPESPKPAPAPGSHREISSSPTSKNR 462
Query: 336 RARREQRDR 344
R +RD+
Sbjct: 463 SHGRAKRDK 471
Score = 35.4 bits (80), Expect = 0.083
Identities = 86/359 (23%), Positives = 119/359 (33%), Gaps = 72/359 (20%)
Query: 52 SPAQYSQTRL--RRRRQGAV--IVGRRRACPGRGRGGLPGAAALGAGAQQ--PRRRRLAQ 105
SP S++RL RR R G+ + + RA P R + G + A A + PRR R
Sbjct: 1582 SPEVDSKSRLSPRRSRSGSSPEVKDKPRAAP-RAQSGSDSSPEPKAPAPRALPRRSRSGS 1640
Query: 106 PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLA 165
R P G + T P P A G +S P + + R R +
Sbjct: 1641 SSKGRGPSPEGSSS------TESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSS 1694
Query: 166 -----SARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLP 220
ARL R A ++ R+ R P + P + SP A+ R+ S P
Sbjct: 1695 PELTRKARLSRRSRSASSSPETRS---RTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSP 1751
Query: 221 ----------APSPAP-----CLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRA---LT 262
+PSP P RT + + + + +R+ +T
Sbjct: 1752 RTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVT 1811
Query: 263 PARGGGEG----DPGPIVGGRPENEDSLASQTSPPAP---------PAPVPSTARARSPG 309
R GG G P R + +PP PAP + SP
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPA 1871
Query: 310 ARRGARELAPRAGRRRQPS-----------GRTSWRRR---------ARREQRDREPAV 348
R +R P RRR S RTS RR +RR R R P V
Sbjct: 1872 THRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPV 1930
Score = 34.7 bits (78), Expect = 0.14
Identities = 72/335 (21%), Positives = 117/335 (34%), Gaps = 34/335 (10%)
Query: 21 PSAYSKIPPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVG--RRRACP 78
P S+ PPR +++ SP + RL RR + A R R P
Sbjct: 1678 PKTKSRTPPR---------------RRSSRSSPELTRKARLSRRSRSASSSPETRSRTPP 1722
Query: 79 GRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPR------RRAHLTGGPPRR 132
R + ++ RRRR A P ++ + G +P +R+ +
Sbjct: 1723 RHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKT 1782
Query: 133 RPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPL 192
R R G S + + +R+R+ R PA R R R
Sbjct: 1783 RTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESS-RTSSRRRRGR 1841
Query: 193 LLQPPPMLSPGLAQ-SPGVELHARTLSLPAP-----SPAPCLPPPAPPAARTPSAHSPAH 246
PP ++ SP +R+ + PA S P + + +P + +
Sbjct: 1842 SRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901
Query: 247 THFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARAR 306
+ ++T + +RA +R P+ R + + S P +R+R
Sbjct: 1902 SRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSR 1961
Query: 307 SPG-ARRGARELAPRAGRRRQPSGRTS--WRRRAR 338
+P RR +R RRR S RTS RRR+R
Sbjct: 1962 TPPVTRRRSRSRTSPITRRRSRS-RTSPVTRRRSR 1995
Score = 34.3 bits (77), Expect = 0.18
Identities = 69/253 (27%), Positives = 95/253 (37%), Gaps = 56/253 (22%)
Query: 104 AQPPGSRAPLQVGGAPRRRAHLTGGPPR---RRPPRLAAAHGLPASEAPGLRPDSARTRL 160
A+PP S + G R + + P R P A +PA+ A + SART
Sbjct: 2193 ARPPPS---MSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTPA 2249
Query: 161 ---RLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELH-ART 216
+ LA +R P A AA + T + P + + P +P V L ART
Sbjct: 2250 IPTAVNLADSRTPA----AAAAMNLASPRTAVAPSAVN---LADPRTPTAPAVNLAGART 2302
Query: 217 LSLPAPSPAPCL-----PPPA---PPAARTPSAHSPA--------HTHFTLTLAEAHTRA 260
PA A L PP A P ++RTP A + A H + +A + T A
Sbjct: 2303 ---PAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAPVNIAGSRTAA 2359
Query: 261 -----------LTPARGGGEGDPGPI-------VGGR--PENEDSLASQTSPPAPPAPVP 300
+ PA G + V GR P D S+T P AP
Sbjct: 2360 ALAPASLTSARMAPALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRM 2419
Query: 301 STARARSPGARRG 313
++ RA SP +R G
Sbjct: 2420 TSERAPSPSSRMG 2432
Score = 33.9 bits (76), Expect = 0.24
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 36/153 (23%)
Query: 219 LPAPSPAPC------LPPPAPPAAR-----------TPSAHSPAHTHFTLTLAEAHTRAL 261
+P+P+PAP PP PA R + S+ S + + + + + + + +
Sbjct: 2579 VPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2638
Query: 262 TPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSP----GARRGAREL 317
+ + P P G +L SP PP P R+RSP + R +R L
Sbjct: 2639 SSSSSSSSSSPSPAKPG----PQALPKPASPKKPP---PGERRSRSPRKPIDSLRDSRSL 2691
Query: 318 APRAGRRRQPSGRTSWR--------RRARREQR 342
+ RR+PS + S R R +RR QR
Sbjct: 2692 SYSPVERRRPSPQPSPRDQQSSSSERGSRRGQR 2724
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 48.5 bits (114), Expect = 9e-06
Identities = 50/155 (32%), Positives = 52/155 (33%), Gaps = 59/155 (38%)
Query: 85 LPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLP 144
+PG LG P R PPG L G P G PP RPP +
Sbjct: 407 MPGPPPLGPPPAPPLR-----PPGPPTGLPPGPPP-------GAPPFLRPPGM------- 447
Query: 145 ASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGL 204
PGLR LPR LPP P G RP PPP PGL
Sbjct: 448 ----PGLR--------------GPLPRLLPPGPPPG---------RPP--GPPPGPPPGL 478
Query: 205 AQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTP 239
P P P P LPPPAPP P
Sbjct: 479 PPGP-----------PPRGPPPRLPPPAPPGIPPP 502
Score = 43.1 bits (100), Expect = 4e-04
Identities = 48/147 (32%), Positives = 51/147 (34%), Gaps = 51/147 (34%)
Query: 106 PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLA 165
PP S P Q+ P + G PP PP AP LRP
Sbjct: 393 PPQSVPPSQIQAPP-----MPGPPPLGPPP------------APPLRPPGP--------- 426
Query: 166 SARLPRGLPPAPAAG----LWRAGCTRLR---PLLLQPPPMLSPGLAQSPGVELHARTLS 218
P GLPP P G L G LR P LL P P PG + PG
Sbjct: 427 ----PTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGP--PPG--RPPG--------- 469
Query: 219 LPAPSPAPCLPPPAPPAARTPSAHSPA 245
P P P P LPP PP P PA
Sbjct: 470 -PPPGPPPGLPPGPPPRGPPPRLPPPA 495
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 48.5 bits (114), Expect = 9e-06
Identities = 73/248 (29%), Positives = 81/248 (32%), Gaps = 57/248 (22%)
Query: 129 PPRR-----RPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWR 183
PPRR PPR A G PA+ A P + A P PPAP A
Sbjct: 101 PPRRGATPPAPPR--APRGAPAAAAAAAPPPTP----------APPP---PPAPVAAAAP 145
Query: 184 AGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHS 243
A R PP SPG AQ PG R L AP PAP PP P A A
Sbjct: 146 ARAPRAAAAAATAPP--SPGPAQ-PGPRAQ-RAAPLAAPPPAPAAPPAVAPPAGPRRAPP 201
Query: 244 PAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTA 303
PA A L P P+ Q PP P P P
Sbjct: 202 PA--------VAAREPPLPPP---------------PQPPAPPQQQQPPPPQPQPPPEGG 238
Query: 304 RARSPGARR--GARELAPRAGRRRQPSGRTSWRR--------RARREQRDREPAVCGAWP 353
R+ GA R RE+ G GR + R A R + +R A P
Sbjct: 239 AVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALP 298
Query: 354 RGSHAAGA 361
RG A
Sbjct: 299 RGDRPGRA 306
Score = 43.5 bits (101), Expect = 3e-04
Identities = 74/294 (25%), Positives = 98/294 (33%), Gaps = 41/294 (13%)
Query: 28 PPRLPIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPG 87
P R + I + + ++ ++ S + + R++ R+GA P R G P
Sbjct: 66 PERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGAT-----PPAPPRAPRGAPA 120
Query: 88 AAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASE 147
AAA A PP + AP P A + P R P AAA P S
Sbjct: 121 AAAAAA------------PPPTPAP------PPPPAPVAAAAPARAPRAAAAAATAPPSP 162
Query: 148 APGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRP--LLLQPPPMLSPGLA 205
P A+ R A P P AP A AG R P + + PP+ P
Sbjct: 163 GPAQPGPRAQ-----RAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQP 217
Query: 206 QSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRA---LT 262
+P + P P P PPP A R A P + A LT
Sbjct: 218 PAPPQQQQP-----PPPQPQ---PPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLT 269
Query: 263 PARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARE 316
R G + GR E A P P A AR ++RG E
Sbjct: 270 RGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRAPPAASARPSRSKRGGEE 323
Score = 34.3 bits (77), Expect = 0.18
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 259 RALTPARGGGEGDPGPIVGGRPENEDSLASQTSP--PAPPAPVPSTARARSPGARRGARE 316
R P RG P G P + A +P P PPAPV + A AR+P A A
Sbjct: 98 RVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAAT 157
Query: 317 LAPRAG 322
P G
Sbjct: 158 APPSPG 163
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 48.1 bits (113), Expect = 1e-05
Identities = 58/249 (23%), Positives = 88/249 (35%), Gaps = 21/249 (8%)
Query: 101 RRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRL 160
++L P S G AP ++A PPR+ P A + PA AP + +
Sbjct: 420 QKLPAVPASSWKPPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPS 479
Query: 161 RLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVEL-----HAR 215
R A++ PR PA P PP +P + P + +
Sbjct: 480 RKASAASASPRKASAVPAP-----------PQKTPPPSQKAPSVPTIPQKAVSPTAPKKK 528
Query: 216 TLSLPAPS--PAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPG 273
+L LPAPS P P A P++ F + RA+ G G P
Sbjct: 529 SLLLPAPSQKALPTSPTEYQMALSPPASRGKLPGDFDVLPTGIPGRAVLERSQSG-GKPE 587
Query: 274 PIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGARRGARELAPRAGRRRQPSGRTSW 333
P+V R + D + T +P +P T + +E+ A R + W
Sbjct: 588 PVVTVRTQETDVVEMTTQAKSPESPFTVTKKESKDILISQTKEVTLEAFRGQ--GKLEDW 645
Query: 334 RRRARREQR 342
A+ E+R
Sbjct: 646 AHWAKLEER 654
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 76 ACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPP 135
+ P R +P + P ++ A P SR +PR+ + + PP++ PP
Sbjct: 446 SAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVP-APPQKTPP 504
Query: 136 RLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAP 177
A +P + P + + + L A ++ + LP +P
Sbjct: 505 PSQKAPSVPTIPQKAVSPTAPKKKSLLLPAPSQ--KALPTSP 544
>gi|169167057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 48.1 bits (113), Expect = 1e-05
Identities = 92/339 (27%), Positives = 115/339 (33%), Gaps = 76/339 (22%)
Query: 32 PIRMTWGIPRESGIQKAHTRSPAQYSQTRLRRRRQGAVIVGRRRACPGRGRGGLPGAAAL 91
P+ G +S I + H RSP GRR G LP L
Sbjct: 3 PLETNKGSIGQSAIPRFHLRSP------------------GRRGTA-----GNLPRRLPL 39
Query: 92 GAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAP-- 149
G+ PR R + S A + GA P P L + AS AP
Sbjct: 40 AQGS--PRCCRFCKGSVSTATVTSSGA---------SAPGSADPTLGSTAARRAS-APWA 87
Query: 150 --GLRPDSARTRL-RLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQ 206
R DS L RLR A+ L P R+ C PL + P LSP
Sbjct: 88 SLSTRADSGLRHLDRLRKAARLLFVNTPHV------RSPCPIRSPLPAREDPPLSPQHWG 141
Query: 207 SPGVELHARTLSLPAPSPA-------------PCLPPPAPPAARTP-----SAHSPAHTH 248
++ R + P PC PP PPA R+P AH
Sbjct: 142 GEILKFPPREKRASSAEPGHWEKRQDKRLETHPCRAPPLPPARRSPLPRAACAHPRRPRP 201
Query: 249 FTLTLAEAHTRALT---PARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARA 305
T R L+ P+ GG+ P P+V R + Q +P A V R
Sbjct: 202 LAGTTFCGGARVLSNPPPSGSGGDARPSPLVPRRCRATSASLPQETPFA--LSVVWAPRR 259
Query: 306 RSPGARRGARELAPRAGRRRQPSG-----RTSWRRRARR 339
RS G RG R P A +R P+G TSW +RR
Sbjct: 260 RSQGDARGRRTGVPCA--KRPPAGWLAAAVTSWSPASRR 296
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 48.1 bits (113), Expect = 1e-05
Identities = 53/166 (31%), Positives = 60/166 (36%), Gaps = 21/166 (12%)
Query: 143 LPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG------LWRAGCTRLRPLL--- 193
LP P L P +A + + LP PP P AG L AG L PL
Sbjct: 883 LPGMTVPTL-PSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAG 941
Query: 194 LQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAP-PAARTPSAHSPAHTHFTLT 252
+ PPP L PG A P L + LP P P +PPP P P A P
Sbjct: 942 IPPPPPL-PGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPP---------P 991
Query: 253 LAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAP 298
L A P G G P P+ G L PP PP P
Sbjct: 992 LPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1037
Score = 41.6 bits (96), Expect = 0.001
Identities = 60/222 (27%), Positives = 65/222 (29%), Gaps = 46/222 (20%)
Query: 78 PGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRL 137
PG G LP G P PP PL G P G P PP L
Sbjct: 927 PGAGILPLPPLPGAGIPPPPPLPGAAIPPP---PPLPGAGIPLPPPLPGAGIPP--PPPL 981
Query: 138 AAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPP 197
A P PG A +P PP P AG+ PP
Sbjct: 982 PGAGIPPPPPLPG----------------AGIPPP-PPLPGAGI--------------PP 1010
Query: 198 PMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAP-PAARTPSAHSPAHTHFTLTLAEA 256
P PG P L + P P P +PPP P P A P L A
Sbjct: 1011 PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP---------PLPGA 1061
Query: 257 HTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAP 298
P G G P P+ G L PP PP P
Sbjct: 1062 GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1103
Score = 39.7 bits (91), Expect = 0.004
Identities = 35/126 (27%), Positives = 40/126 (31%), Gaps = 24/126 (19%)
Query: 174 PPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAP 233
PP P AG+ PPP PG+ P L + P P P +PPP P
Sbjct: 1089 PPLPGAGI--------------PPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1134
Query: 234 -PAARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSP 292
P A P L P G G P P+ G L P
Sbjct: 1135 LPGAGIPPPP---------PLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIP 1185
Query: 293 PAPPAP 298
P PP P
Sbjct: 1186 PPPPLP 1191
Score = 37.7 bits (86), Expect = 0.017
Identities = 71/278 (25%), Positives = 88/278 (31%), Gaps = 49/278 (17%)
Query: 78 PGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRL 137
P G G P GAG P A P VG P G PP PP L
Sbjct: 1068 PLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPP---PPPL 1124
Query: 138 AAAHGLPASEAPG--LRPDSARTRLRLR----LASARLPRGLPPAPAAGLWRAGCTRLRP 191
A P PG + P R+ + L A +P PP P AG+
Sbjct: 1125 PGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPP-PPLPGAGI---------- 1173
Query: 192 LLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAP-PAARTPSAHSPAHTHFT 250
PPP PG+ P L + P P P +PPP P P P A +P
Sbjct: 1174 ----PPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGMGIPPAPAPP----- 1224
Query: 251 LTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAP-----PAPVPSTARA 305
P G G P + P + S T P P P+PS
Sbjct: 1225 -----------LPPPGTGIPPPPLLPVSGPPLLPQVGSSTLPTPQVCGFLPPPLPSGLFG 1273
Query: 306 RSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRD 343
+G+R+ R +P W R +RD
Sbjct: 1274 LGMNQDKGSRKQPIEPCRPMKP---LYWTRIQLHSKRD 1308
Score = 31.2 bits (69), Expect = 1.6
Identities = 48/179 (26%), Positives = 64/179 (35%), Gaps = 13/179 (7%)
Query: 132 RRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAG--LWRAGCT-- 187
R P + + GLP SEAP L + + P P AAG + AG T
Sbjct: 288 REPQQPPSPGGLPVSEAPSLPAAQPAAKDSPSSTAFPFPEAGPGEEAAGAPVRGAGDTDE 347
Query: 188 RLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHT 247
+ P SPG +P V A L P AP AA P + +P+
Sbjct: 348 EGEEDAFEDAPRGSPGEEWAPEVGEDA-PQRLGEEPEEEAQGPDAPAAASLPGSPAPSQR 406
Query: 248 HF------TLTLAEAHTRALTPARGGGEGDP--GPIVGGRPENEDSLASQTSPPAPPAP 298
F T + TR L+ P P + RPE S S+T+ + AP
Sbjct: 407 CFKPYPLITPCYIKTTTRQLSSPNHSPSQSPNQSPRIKRRPEPSLSRGSRTALASVAAP 465
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 48.1 bits (113), Expect = 1e-05
Identities = 44/133 (33%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 174 PPAPAAGLWR---AGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPP 230
PP P + + + A C P PPP L Q H ++ P P P P +P
Sbjct: 718 PPTPGSAMAQLKPAPCAPSLPQFSAPPPPLKIHQVQ------HITQVAPPTPPPPPPIPA 771
Query: 231 PAPP-AARTPSAHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLAS- 288
P PP A P PA T T T+A T+A P P P V + AS
Sbjct: 772 PLPPQAPPKPLVTIPAPTS-TKTVAPVVTQAAPPT-------PTPPVPPAKKQPAFPASY 823
Query: 289 -QTSPPAPPAPVP 300
SPP PP PVP
Sbjct: 824 IPPSPPTPPVPVP 836
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 187 TRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPA- 245
T L P L P +++P A P L P P P P PPP P+ PSA S A
Sbjct: 603 TSLVPPLSPQPKIVTPYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAP 662
Query: 246 -----HTHFTLTLAEAHTRAL-----TPARGGGEGDPGPIVGGRPENEDSLASQTSPPAP 295
T L A H+ AL P P +V P N PP P
Sbjct: 663 MFVKYSTITRLQNASQHSGALFKPPTPPVMQSQSVKPQILV---PPNG---VVPPPPPPP 716
Query: 296 PAPVPSTARAR 306
P P P +A A+
Sbjct: 717 PPPTPGSAMAQ 727
Score = 40.4 bits (93), Expect = 0.003
Identities = 52/223 (23%), Positives = 76/223 (34%), Gaps = 35/223 (15%)
Query: 106 PPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLA 165
PP P+ P++++ PP P + + + P P + ++ +
Sbjct: 828 PPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFPPPPTPPAMESQPLKPVP 887
Query: 166 SARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPA 225
+ P+ P A W+ + P PPP L P P PSP
Sbjct: 888 ANVAPQSPPAVKAKPKWQPSSIPV-PSPDFPPPPPESSLVFPP-----------PPPSPV 935
Query: 226 PCLPPPAPP-AARTP-SAHSPAHTHFTLTLAEAHTRALTPAR------GGGEGDPGPIVG 277
P PPP PP A+ TP + SP + TP R G P P
Sbjct: 936 PAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSGAEHPEP--- 992
Query: 278 GRPENEDSLASQTSPPA-----------PPAPVPSTARARSPG 309
+ + DSL S+ +PPA PPA P + G
Sbjct: 993 -KRPSVDSLVSKFTPPAESGSPSKETLPPPAAPPKPGKLNLSG 1034
Score = 35.4 bits (80), Expect = 0.083
Identities = 47/198 (23%), Positives = 68/198 (34%), Gaps = 39/198 (19%)
Query: 167 ARLPRGLPPAPAAGLWRAGCTR-LRPLLLQ-----PPPMLSPGLAQS--PGVELHARTLS 218
A LP PP P + T+ + P++ Q P P + P Q P + +
Sbjct: 771 APLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIPPSPPT 830
Query: 219 LPAPSPAPCLP--------PPAPPAARTPSAHSPAHTHFTL--TLAEAHTRALTPARGGG 268
P P P P LP PP P + PS + F T ++ L P
Sbjct: 831 PPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFPPPPTPPAMESQPLKPVPANV 890
Query: 269 EGDPGPIVGGRPENEDSL--------------ASQTSPPAPPAPVPSTARARSPGARRGA 314
P V +P+ + S +S PP PP+PVP+ P A
Sbjct: 891 APQSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTA---- 946
Query: 315 RELAPRAGRRRQPSGRTS 332
+P + P +TS
Sbjct: 947 ---SPTPDKSGSPGKKTS 961
Score = 34.7 bits (78), Expect = 0.14
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 193 LLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLT 252
L +PP +P + QS V+ + +P P PPP PP TP +
Sbjct: 683 LFKPP---TPPVMQSQSVKPQ---ILVPPNGVVP--PPPPPPPPPTPGS----------A 724
Query: 253 LAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARA 305
+A+ P+ P P+ + ++ +A T PP PP P P +A
Sbjct: 725 MAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPIPAPLPPQA 777
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,036,762
Number of Sequences: 37866
Number of extensions: 1534334
Number of successful extensions: 24434
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 1904
Number of HSP's that attempted gapping in prelim test: 13912
Number of HSP's gapped (non-prelim): 8362
length of query: 370
length of database: 18,247,518
effective HSP length: 104
effective length of query: 266
effective length of database: 14,309,454
effective search space: 3806314764
effective search space used: 3806314764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.