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Search of human proteins with 239752663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens] 395 e-110
gi|239741007 PREDICTED: hypothetical protein XP_002342063 [Homo ... 251 2e-67
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 41 5e-04
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 41 5e-04
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 40 0.001
gi|73476377 LBXCOR1 homolog [Homo sapiens] 40 0.002
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|12751477 forkhead box L2 [Homo sapiens] 39 0.003
gi|154146199 sal-like 3 [Homo sapiens] 39 0.003
gi|29893564 microspherule protein 1 isoform 1 [Homo sapiens] 36 0.017
gi|59799166 microspherule protein 1 isoform 2 [Homo sapiens] 36 0.017
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 36 0.017
gi|118402590 myosin XV [Homo sapiens] 36 0.023
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 36 0.023
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 35 0.039
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Ho... 35 0.051
gi|116292174 fidgetin-like 2 [Homo sapiens] 34 0.066
gi|54792092 ATM interactor [Homo sapiens] 34 0.066
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 34 0.087
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 34 0.087
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 34 0.087
gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens] 34 0.087
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.087
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 34 0.087
gi|171543895 ataxin 2 [Homo sapiens] 33 0.11
>gi|239752663 PREDICTED: similar to HSPC088 [Homo sapiens]
Length = 190
Score = 395 bits (1014), Expect = e-110
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MAAAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPA 60
MAAAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPA
Sbjct: 1 MAAAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPA 60
Query: 61 PGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPS 120
PGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPS
Sbjct: 61 PGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPS 120
Query: 121 VPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRSTSL 180
VPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRSTSL
Sbjct: 121 VPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRSTSL 180
Query: 181 FYESPSTFNV 190
FYESPSTFNV
Sbjct: 181 FYESPSTFNV 190
>gi|239741007 PREDICTED: hypothetical protein XP_002342063 [Homo
sapiens]
Length = 139
Score = 251 bits (642), Expect = 2e-67
Identities = 126/138 (91%), Positives = 128/138 (92%), Gaps = 1/138 (0%)
Query: 54 AANAAPAPGHPAPAPSV-TRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSL 112
AA A + AP+V TRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSL
Sbjct: 2 AAAVAGSGRRETTAPAVVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSL 61
Query: 113 GTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPA 172
GTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPA
Sbjct: 62 GTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPA 121
Query: 173 HTSRSTSLFYESPSTFNV 190
HTSRSTSLFYESPSTFNV
Sbjct: 122 HTSRSTSLFYESPSTFNV 139
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 41.2 bits (95), Expect = 5e-04
Identities = 52/169 (30%), Positives = 63/169 (37%), Gaps = 30/169 (17%)
Query: 14 GAGGVACGDCAAASPPTLGAGP---RTERRHWPSGALHSARPGAANAAPAPGHPAPAPSV 70
GAG + D A + P GAGP R RR W A + R GA P P PA +P
Sbjct: 709 GAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAA--ALRKGAPREQP-PASPAASPCQ 765
Query: 71 TRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPR-----PGVSSLGTILCVPSVPVGP 125
R E++ E PRL A PR PG S L + P+ G
Sbjct: 766 APRAPEKE------------TEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL 813
Query: 126 IVLTSATPESS---RFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAP 171
V + P S R AP EA LR + Y PP+P
Sbjct: 814 GVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGL----YPPPSP 858
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 41.2 bits (95), Expect = 5e-04
Identities = 52/169 (30%), Positives = 63/169 (37%), Gaps = 30/169 (17%)
Query: 14 GAGGVACGDCAAASPPTLGAGP---RTERRHWPSGALHSARPGAANAAPAPGHPAPAPSV 70
GAG + D A + P GAGP R RR W A + R GA P P PA +P
Sbjct: 377 GAGDFSEADLADRAFPVRGAGPIAGRRRRRGWTFAA--ALRKGAPREQP-PASPAASPCQ 433
Query: 71 TRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPR-----PGVSSLGTILCVPSVPVGP 125
R E++ E PRL A PR PG S L + P+ G
Sbjct: 434 APRAPEKE------------TEAPRLRGRATAVAPRPLPAAPGFSGLCVLQPFPARSRGL 481
Query: 126 IVLTSATPESS---RFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAP 171
V + P S R AP EA LR + Y PP+P
Sbjct: 482 GVPSQQGPTGSPGCRDRASAPRAGAEAGSMETFLRNGGL----YPPPSP 526
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 26/146 (17%)
Query: 45 GALHSARPGAANAAPAPG-----HPAPAPSVTRRRA-----EQQDVIRCRRRLW------ 88
GAL S PG+ N++P P H P P ++R A ++ RC LW
Sbjct: 156 GALSSGVPGSGNSSPLPSDFLIRHHGPKPVSSQRNAGTGSRKRVGTARCCGELWATGSKG 215
Query: 89 --ERCETPRLPEIALRALPRPGVSSLGTILCVPSVPVGPIVLTSATPESS--RFTRPAPS 144
ER T A R PG S G P + P +A S R +R AP
Sbjct: 216 QGERATTSGAERTAPRRNCLPGASGSG-----PELDSAPRTARTAPASGSAPRESRTAPE 270
Query: 145 TVPEAHRHSRILRLAPVPCR-CYRPP 169
P+ R + R +P R RPP
Sbjct: 271 PAPKRMRSRGLFRCRFLPQRPGPRPP 296
Score = 28.5 bits (62), Expect = 3.6
Identities = 34/123 (27%), Positives = 45/123 (36%), Gaps = 37/123 (30%)
Query: 20 CGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRRRAEQQD 79
C A+ S P L + PRT R SG +AP AP P+ R R+ +
Sbjct: 234 CLPGASGSGPELDSAPRTARTAPASG-----------SAPRESRTAPEPAPKRMRS--RG 280
Query: 80 VIRCRRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPSVPVGPIVLTSATPESSRFT 139
+ RCR LP+ R PRP P +P P + +RF
Sbjct: 281 LFRCR----------FLPQ---RPGPRP-----------PGLPARPEARKVTSANRARFR 316
Query: 140 RPA 142
R A
Sbjct: 317 RAA 319
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/61 (44%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 7 GSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHW---PSGALHSARPGAANAAPAPGH 63
GSG G GG A G A+ PP GAGP W PSGA A AA AA A +
Sbjct: 382 GSGGGGAGTGGGAGGPGASHLPPGAGAGPGGGAMFWGHQPSGAAKDAAAVAAAAAAATVY 441
Query: 64 P 64
P
Sbjct: 442 P 442
Score = 27.7 bits (60), Expect = 6.2
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 27 SPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAP 66
S P+ G GP E+ P A S G AN +P G P P
Sbjct: 637 SAPSAGGGPDGEQPTGPPSATSSGADGPAN-SPDGGSPRP 675
>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 12/132 (9%)
Query: 45 GALHSARPGAANA-APAPGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRA 103
GAL R G + A APAPG S RR + C R W + +
Sbjct: 885 GALPGDRSGVSKATAPAPGALCSERSRARRSIAPTPCLLCGDRSW----------VGMGI 934
Query: 104 LPRPGVSSLGTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPC 163
P PG G ++ + P L + R P P + + +AP P
Sbjct: 935 APTPGALLGGKSRKCRAIAITPGALRGGRSQKRRVVAPTPEAL-HGDGSWTYMAIAPTPG 993
Query: 164 RCYRPPAPAHTS 175
+ +PAHTS
Sbjct: 994 ALHGDSSPAHTS 1005
>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 12/132 (9%)
Query: 45 GALHSARPGAANA-APAPGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRA 103
GAL R G + A APAPG S RR + C R W + +
Sbjct: 885 GALPGDRSGVSKATAPAPGALCSERSRARRSIAPTPCLLCGDRSW----------VGMGI 934
Query: 104 LPRPGVSSLGTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPC 163
P PG G ++ + P L + R P P + + +AP P
Sbjct: 935 APTPGALLGGKSRKCRAIAITPGALRGGRSQKRRVVAPTPEAL-HGDGSWTYMAIAPTPG 993
Query: 164 RCYRPPAPAHTS 175
+ +PAHTS
Sbjct: 994 ALHGDSSPAHTS 1005
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 12/132 (9%)
Query: 45 GALHSARPGAANA-APAPGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRA 103
GAL R G + A APAPG S RR + C R W + +
Sbjct: 853 GALPGDRSGVSKATAPAPGALCSERSRARRSIAPTPCLLCGDRSW----------VGMGI 902
Query: 104 LPRPGVSSLGTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPC 163
P PG G ++ + P L + R P P + + +AP P
Sbjct: 903 APTPGALLGGKSRKCRAIAITPGALRGGRSQKRRVVAPTPEAL-HGDGSWTYMAIAPTPG 961
Query: 164 RCYRPPAPAHTS 175
+ +PAHTS
Sbjct: 962 ALHGDSSPAHTS 973
>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1934
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 12/132 (9%)
Query: 45 GALHSARPGAANA-APAPGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRA 103
GAL R G + A APAPG S RR + C R W + +
Sbjct: 759 GALPGDRSGVSKATAPAPGALCSERSRARRSIAPTPCLLCGDRSW----------VGMGI 808
Query: 104 LPRPGVSSLGTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPC 163
P PG G ++ + P L + R P P + + +AP P
Sbjct: 809 APTPGALLGGKSRKCRAIAITPGALRGGRSQKRRVVAPTPEAL-HGDGSWTYMAIAPTPG 867
Query: 164 RCYRPPAPAHTS 175
+ +PAHTS
Sbjct: 868 ALHGDSSPAHTS 879
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 20/162 (12%)
Query: 14 GAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRR 73
GAGG A G C A G G ++ SG L+ N+ P P P+P P + +
Sbjct: 168 GAGGAA-GGCGVAGAGADGYGYLAPPKYLQSGFLN-------NSWPLPQPPSPMPYASCQ 219
Query: 74 RAEQQDVIRCRRRLWERCETPRLPEIA--LRALPRPGVSSLGTILCVPSVPVGPIVLTSA 131
A P P A ++ L P +S G V S+ + P V+ S
Sbjct: 220 MAAAAAAAAAAAA----AAGPGSPGAAAVVKGLAGPA-ASYGPYTRVQSMALPPGVVNSY 274
Query: 132 TPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPAH 173
P P P H H+ L A P PPAP H
Sbjct: 275 NGLGGPPAAPPPPPHPHPHPHAHHLHAAAAP-----PPAPPH 311
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/68 (39%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 2 AAAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAP 61
AAA+AGSG A A S P GA P G + P A +AAPAP
Sbjct: 272 AAAIAGSGP----AAPAAFEGAQPLSRPESGAST-------PGGPAEPSAPAAPSAAPAP 320
Query: 62 GHPAPAPS 69
PAPAP+
Sbjct: 321 AAPAPAPA 328
>gi|29893564 microspherule protein 1 isoform 1 [Homo sapiens]
Length = 462
Score = 36.2 bits (82), Expect = 0.017
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 3 AAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPG 62
+++A S TR GA GV G C+ + P + +E++ + A + P P
Sbjct: 64 SSLAKSSTRAKGASGVEPGRCSGSEPSS------SEKK----------KVSKAPSTPVPP 107
Query: 63 HPAPAPSVTRRRAEQQDVIRCRRRL 87
PAPAP +T+R + + ++ + L
Sbjct: 108 SPAPAPGLTKRVKKSKQPLQVTKDL 132
>gi|59799166 microspherule protein 1 isoform 2 [Homo sapiens]
Length = 475
Score = 36.2 bits (82), Expect = 0.017
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 3 AAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPG 62
+++A S TR GA GV G C+ + P + +E++ + A + P P
Sbjct: 77 SSLAKSSTRAKGASGVEPGRCSGSEPSS------SEKK----------KVSKAPSTPVPP 120
Query: 63 HPAPAPSVTRRRAEQQDVIRCRRRL 87
PAPAP +T+R + + ++ + L
Sbjct: 121 SPAPAPGLTKRVKKSKQPLQVTKDL 145
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 36.2 bits (82), Expect = 0.017
Identities = 46/169 (27%), Positives = 61/169 (36%), Gaps = 17/169 (10%)
Query: 6 AGSGTRNDGAGGVACGDCAAASPPTLG---AGPRTERRHWPSGALHSARPGAANAAPAPG 62
+ GT +G G + A++PPTLG AG R P+G A PG
Sbjct: 75 SSKGTNKEGGG--SANTRGASTPPTLGDLFAGGFPVLR--PAGQRDVA---GGKTGQGPG 127
Query: 63 HPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPSVP 122
AP+P + + + RL T A A PRP V + P+ P
Sbjct: 128 SRAPSPRLPNKTISGPLIPPASPRLG---NTSEAHGAARTAPPRPNVPAPPP----PTPP 180
Query: 123 VGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAP 171
P L P SS P S + + + PVPC PP P
Sbjct: 181 PPPPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPP 229
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 35.8 bits (81), Expect = 0.023
Identities = 41/126 (32%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 59 PAPGHPAPAPSVTRRR------AEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSL 112
P G P P P+ + R +E++ + R R R P + E A + R G
Sbjct: 559 PEFGRPVPRPATSLARFLKKTLSEKKPIARLRGSQKARAGGPAVREAAYK---RFGYKLA 615
Query: 113 GTILCVPSVPVGPIVLTSATPE--SSRFTR--PAPSTVPEAHRHSRILRLAPVPCR---C 165
G P P PIVL A P SS R PAP P H L PVP R
Sbjct: 616 GMD---PEKPGTPIVLRRAQPRARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSS 672
Query: 166 YRPPAP 171
PPAP
Sbjct: 673 GPPPAP 678
Score = 28.1 bits (61), Expect = 4.8
Identities = 37/146 (25%), Positives = 50/146 (34%), Gaps = 48/146 (32%)
Query: 53 GAANAAPAPGHPAPAPSVTRRRAEQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSL 112
G+ A G P +P +RRRA W + P+ +LR+ P
Sbjct: 747 GSRRRGAAFGFPGASPRASRRRA------------WSPLAS---PQPSLRSSP------- 784
Query: 113 GTILCVPSVPVGPIVLTSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCY------ 166
G C P P P + P F PA R R L+ +P P R
Sbjct: 785 GLGYCSPLAPPSPQLSLRTGPFQPPFLPPA--------RRPRSLQESPAPRRAAGRLGPP 836
Query: 167 --------RPPAP----AHTSRSTSL 180
RPP+P H+ R +SL
Sbjct: 837 GSPLPGSPRPPSPPLGLCHSPRRSSL 862
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 35.8 bits (81), Expect = 0.023
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 24/146 (16%)
Query: 27 SPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRRRAEQQDVIRCRRR 86
+P +G PR R H G P A A P AP + D R R R
Sbjct: 111 APLQVGGAPR-RRAHLTGGPPRRRPPRLAAAHGLPASEAPGL--------RPDSARTRLR 161
Query: 87 LWERCETPRLPEIALRALPRPGVSSLGTILCVPSVPVGPIVLTSATPESSRFTRPAPSTV 146
L R + RLP L P G+ G P + P +L+ +S
Sbjct: 162 L--RLASARLPR-GLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQS----------- 207
Query: 147 PEAHRHSRILRL-APVPCRCYRPPAP 171
P H+R L L AP P C PPAP
Sbjct: 208 PGVELHARTLSLPAPSPAPCLPPPAP 233
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 35.0 bits (79), Expect = 0.039
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 21 GDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPG---HPAPAPSVTRRRAEQ 77
G A SPP + PRT RR G +R A+A+ G P+P+P +TR+ Q
Sbjct: 121 GMADANSPPKPLSKPRTPRRSKSDGEAKRSRDPPASASQVTGIRAEPSPSPRITRKSTRQ 180
Query: 78 QDV 80
+
Sbjct: 181 TTI 183
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 35.0 bits (79), Expect = 0.039
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 24 AAASPPTLGAGPRTE--RRHWPSGALHSARPGAANAAPAP--GHPAPAPSVTRRRAEQQD 79
AA SP L A P + R PSG P +A AAP P P P SVT R EQ+
Sbjct: 110 AAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGSVTAREQEQRP 169
Query: 80 VIRCRRR 86
R RRR
Sbjct: 170 --RSRRR 174
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 35.0 bits (79), Expect = 0.039
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 24 AAASPPTLGAGPRTE--RRHWPSGALHSARPGAANAAPAP--GHPAPAPSVTRRRAEQQD 79
AA SP L A P + R PSG P +A AAP P P P SVT R EQ+
Sbjct: 110 AAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGSVTAREQEQRP 169
Query: 80 VIRCRRR 86
R RRR
Sbjct: 170 --RSRRR 174
>gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Homo
sapiens]
Length = 722
Score = 34.7 bits (78), Expect = 0.051
Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 5/157 (3%)
Query: 22 DCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRRRAEQQDVI 81
D AAA P ER+H + H G P P + P RR A
Sbjct: 127 DAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLYQIPLPS--SQIPPQPRRAAPTTPPP 184
Query: 82 RCRRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPSVPVGPIVLTSATPESSRFTRP 141
+RR +R +P G +S+ + V S + + +S+ E P
Sbjct: 185 PVKRR--DREALMASGSGGHNTMPSGG-NSVSSGSSVSSTSLDTLYTSSSPSEPGSSCSP 241
Query: 142 APSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRST 178
P VP H+ + ++ P P + P PA +T
Sbjct: 242 TPPPVPRRGTHTTVSQVQPPPSKASAPEPPAEEEVAT 278
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 34.3 bits (77), Expect = 0.066
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 14 GAGGVACGDCAAAS--------------PPTLGAGPRTERRHWPSGALHSARPGAANAAP 59
G G +A G CA PP G GP ++P+G ++A+PG P
Sbjct: 163 GGGYLAPGYCAQTGAALPPPPPAALLQPPPPPGYGPSAPLYNYPAGG-YAAQPGYGALPP 221
Query: 60 APGHPAPAPSVT 71
PG P PAP +T
Sbjct: 222 PPG-PPPAPYLT 232
>gi|54792092 ATM interactor [Homo sapiens]
Length = 823
Score = 34.3 bits (77), Expect = 0.066
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 2 AAAVAGSGTRNDGAGGVAC---GDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAA 58
AAA AGS GA V G AAAS P + GPR L +RP A A
Sbjct: 6 AAAAAGSAALAAGARAVPAATTGAAAAASGPWVPPGPR----------LRGSRPRPAGAT 55
Query: 59 PAPGHPAP 66
P PAP
Sbjct: 56 QQPAVPAP 63
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 33.9 bits (76), Expect = 0.087
Identities = 48/181 (26%), Positives = 68/181 (37%), Gaps = 31/181 (17%)
Query: 21 GDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRRRAEQQDV 80
G A +PP G P+G A A + P P+P+PS+ RRRA
Sbjct: 80 GGVTAPAPPDAEVGSGR-----PAGLAARAAAAAPRSLRKPS-PSPSPSLRRRRARNSPG 133
Query: 81 IR---------------CRRRLWERC--ETPRLP--EIALRALPRPGVSSLGTILCVPSV 121
IR R W C +P LP + LR + S + C+ S
Sbjct: 134 IRPSPSPSPSPSPSPSPARGGRWTTCASSSPALPGTDGVLRRMSPVCPPSPVVLACLVSS 193
Query: 122 PVGPIVL----TSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRS 177
P P L T +PE + ++ +P T ++ R R+ L P P PA T +
Sbjct: 194 PHVPASLTPPPTRGSPEIAENSKRSPGTGKKS-RQGRLRSLHPSLLPSLHPD-PAQTFVT 251
Query: 178 T 178
T
Sbjct: 252 T 252
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 33.9 bits (76), Expect = 0.087
Identities = 48/181 (26%), Positives = 68/181 (37%), Gaps = 31/181 (17%)
Query: 21 GDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRRRAEQQDV 80
G A +PP G P+G A A + P P+P+PS+ RRRA
Sbjct: 80 GGVTAPAPPDAEVGSGR-----PAGLAARAAAAAPRSLRKPS-PSPSPSLRRRRARNSPG 133
Query: 81 IR---------------CRRRLWERC--ETPRLP--EIALRALPRPGVSSLGTILCVPSV 121
IR R W C +P LP + LR + S + C+ S
Sbjct: 134 IRPSPSPSPSPSPSPSPARGGRWTTCASSSPALPGTDGVLRRMSPVCPPSPVVLACLVSS 193
Query: 122 PVGPIVL----TSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRS 177
P P L T +PE + ++ +P T ++ R R+ L P P PA T +
Sbjct: 194 PHVPASLTPPPTRGSPEIAENSKRSPGTGKKS-RQGRLRSLHPSLLPSLHPD-PAQTFVT 251
Query: 178 T 178
T
Sbjct: 252 T 252
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 33.9 bits (76), Expect = 0.087
Identities = 48/181 (26%), Positives = 68/181 (37%), Gaps = 31/181 (17%)
Query: 21 GDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRRRAEQQDV 80
G A +PP G P+G A A + P P+P+PS+ RRRA
Sbjct: 80 GGVTAPAPPDAEVGSGR-----PAGLAARAAAAAPRSLRKPS-PSPSPSLRRRRARNSPG 133
Query: 81 IR---------------CRRRLWERC--ETPRLP--EIALRALPRPGVSSLGTILCVPSV 121
IR R W C +P LP + LR + S + C+ S
Sbjct: 134 IRPSPSPSPSPSPSPSPARGGRWTTCASSSPALPGTDGVLRRMSPVCPPSPVVLACLVSS 193
Query: 122 PVGPIVL----TSATPESSRFTRPAPSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRS 177
P P L T +PE + ++ +P T ++ R R+ L P P PA T +
Sbjct: 194 PHVPASLTPPPTRGSPEIAENSKRSPGTGKKS-RQGRLRSLHPSLLPSLHPD-PAQTFVT 251
Query: 178 T 178
T
Sbjct: 252 T 252
>gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens]
Length = 256
Score = 33.9 bits (76), Expect = 0.087
Identities = 47/142 (33%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 31 LGAGPRTERRHWPSGALHSARPGAANAAP-APGHPAPAPSV--TRRRAEQQDVIRC---- 83
LGAG + H S + A PG AP APG P P PS + Q + C
Sbjct: 77 LGAGGTWDLNHAGSWPVVQAVPGRCGRAPQAPGGP-PLPSCHPSWESPGQGGLEACPTCA 135
Query: 84 RRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPSVPVGPI-VLTSATP--ESSRFTR 140
+ LW LP L +LP SS + P P P+ L A P FT
Sbjct: 136 QGSLW-------LPSAGLCSLPACFPSSSWAL---PQHPPEPLPFLAPAWPGIPEDAFTS 185
Query: 141 PAPSTVPEAHRHSRILRLAPVP 162
PAP V HS +L L P+P
Sbjct: 186 PAPCLV---DHHSCLLLLCPLP 204
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 33.9 bits (76), Expect = 0.087
Identities = 37/155 (23%), Positives = 53/155 (34%), Gaps = 26/155 (16%)
Query: 27 SPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAPSVTRRRAEQQDVIRCRRR 86
+PP +GA P+ A P A A AP P PAP+ R
Sbjct: 240 TPPFVGAAAPPA----PAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGH--------- 286
Query: 87 LWERCETPRLPEIALRALPRPGVSSLGTILCVPSVPV----GPIVLTSATPESSRFTRPA 142
P P A A+P P + G P GP ++ + PA
Sbjct: 287 -------PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPA 339
Query: 143 PSTVPEAHRHSRILRLAPVPCRCYRPPAPAHTSRS 177
P E+ + R+++ AP + PA T+ S
Sbjct: 340 PGVKAESPK--RVVQAAPPAAQTLAASGPASTAAS 372
Score = 32.0 bits (71), Expect = 0.33
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 21 GDCAAASPPTLGAGPRTERRHWPSGALHSARPGAANAAPAPGHPAPAP 68
G AA P AG P+G PGAA AAPAPG A +P
Sbjct: 307 GSAGAAPAPAPAAGG-------PAGVSGQPGPGAAAAAPAPGVKAESP 347
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 33.9 bits (76), Expect = 0.087
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 2 AAAVAGSGTRNDGAGGVACGDCAAASPPTLGAGPRTERRHWPSGALHSARP-----GAAN 56
A+ SG + + + AA SPP+ G GPR R W +G+ +A P
Sbjct: 39 ASLCFSSGEESPPQSLASAAEGAATSPPSSG-GPRVVERQWEAGSAGAASPEELASPEER 97
Query: 57 AAP-APGHPAPAPSV 70
A P P P+P P V
Sbjct: 98 ACPEEPAAPSPEPRV 112
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 33.5 bits (75), Expect = 0.11
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 26 ASPPTLGAGPRTERRHWPSGALHSA-RPGAANAAPAPGHPAPA---------PSVTRRRA 75
ASP GA P R P GA S R G + A PAPG P PA S+ ++
Sbjct: 112 ASP---GAPPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQ 168
Query: 76 EQQDVIRCRRRLWERCETPRLPEIALRALPRPGVSSLGTILCVPSVPVGPIVLTSATPES 135
+QQ + +++ ++ + + P A G L + PS + +SAT S
Sbjct: 169 QQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPS 228
Query: 136 S 136
S
Sbjct: 229 S 229
Score = 30.4 bits (67), Expect = 0.96
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 14 GAGGVACGDCAAASPPTLGAGPRTERRHWPSGALH----------SARPGAANAAPAPGH 63
G GG A G +A+PP G GP R+ P A + RPG+ G
Sbjct: 41 GGGGAAPGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGP 100
Query: 64 PAP 66
P P
Sbjct: 101 PRP 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,346,824
Number of Sequences: 37866
Number of extensions: 657702
Number of successful extensions: 4794
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 301
Number of HSP's that attempted gapping in prelim test: 4362
Number of HSP's gapped (non-prelim): 698
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.