Guide to the Human Genome
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Name: LOC100288313 Sequence: fasta or formatted (139aa) NCBI GI: 239741007
Description:

PREDICTED: hypothetical protein XP_002342063

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         15           3
 C cysteine            3.6          5           1
 D aspartate           0.7          1           1
 E glutamate           5.8          8           1
 F phenylalanine       2.2          3           1
 G glycine             3.6          5           1
 H histidine           2.2          3           1
 I isoleucine          3.6          5           1
 K lysine              0.0          0           0
 L leucine             7.2         10           1
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline            12.9         18           2
 Q glutamine           1.4          2           2
 R arginine           15.1         21           3
 S serine             10.1         14           2
 T threonine           8.6         12           2
 V valine              8.6         12           2
 W tryptophan          0.7          1           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342063 
LOC100293608          0.876   PREDICTED: similar to HSPC088 
KIAA1522              0.027   hypothetical protein LOC57648 
C2orf71               0.027   hypothetical protein LOC388939 
MYO15A                0.023   myosin XV 
NCKIPSD               0.023   NCK interacting protein with SH3 domain isoform 1 [Ho...
NCKIPSD               0.023   NCK interacting protein with SH3 domain isoform 2 [H...
MAPK7                 0.019   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.019   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.019   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.019   mitogen-activated protein kinase 7 isoform 2 
BTBD2                 0.019   BTB (POZ) domain containing 2 
LOC100292934          0.019   PREDICTED: hypothetical protein 
SPAG5                 0.016   sperm associated antigen 5 
ANGPTL6               0.016   angiopoietin-like 6 
MUC6                  0.016   mucin 6, gastric 
WIPF2                 0.016   WIRE protein 
BAT2D1                0.016   HBxAg transactivated protein 2 
FOXL2                 0.016   forkhead box L2 
ADAM12                0.016   ADAM metallopeptidase domain 12 isoform 1 preproprot...
ASCL1                 0.012   achaete-scute complex homolog 1 
TBC1D1                0.012   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
MDGA1                 0.012   MAM domain containing glycosylphosphatidylinositol a...
ITPKB                 0.012   1D-myo-inositol-trisphosphate 3-kinase B 
SRCAP                 0.012   Snf2-related CBP activator protein 
C17orf96              0.012   hypothetical protein LOC100170841 
IGSF9B                0.012   immunoglobulin superfamily, member 9B 
PER2                  0.012   period 2 
GDF15                 0.012   growth differentiation factor 15 
MUC2                  0.012   mucin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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