Guide to the Human Genome
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Name: LOC729580 Sequence: fasta or formatted (278aa) NCBI GI: 239757467
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {278aa} PREDICTED: hypothetical protein
alt mRNA {278aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         31           5
 C cysteine            1.8          5           1
 D aspartate           1.4          4           1
 E glutamate           2.9          8           1
 F phenylalanine       1.1          3           1
 G glycine            10.8         30           3
 H histidine           1.1          3           1
 I isoleucine          1.4          4           1
 K lysine              1.4          4           2
 L leucine             8.6         24           2
 M methionine          0.7          2           1
 N asparagine          1.1          3           1
 P proline            16.2         45           3
 Q glutamine           1.8          5           1
 R arginine           12.2         34           4
 S serine             13.7         38           3
 T threonine           4.0         11           2
 V valine              6.1         17           2
 W tryptophan          2.5          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729580             1.000   PREDICTED: hypothetical protein 
LOC729580             0.995   PREDICTED: hypothetical protein 
SAMD1                 0.062   sterile alpha motif domain containing 1 
SRRM1                 0.058   serine/arginine repetitive matrix 1 
TTBK1                 0.051   tau tubulin kinase 1 
WIPF2                 0.051   WIRE protein 
TAF4                  0.049   TBP-associated factor 4 
SRCAP                 0.049   Snf2-related CBP activator protein 
NACA                  0.049   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.049   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.047   PREDICTED: hypothetical protein FLJ22184 
ZIC5                  0.047   zinc finger protein of the cerebellum 5 
LOC643355             0.046   PREDICTED: hypothetical protein 
LOC643355             0.046   PREDICTED: hypothetical protein 
DIAPH1                0.044   diaphanous 1 isoform 2 
DIAPH1                0.044   diaphanous 1 isoform 1 
CDKN1C                0.044   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.044   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.044   cyclin-dependent kinase inhibitor 1C isoform a 
SEC24C                0.044   SEC24-related protein C 
SEC24C                0.044   SEC24-related protein C 
LOC100134147          0.042   PREDICTED: hypothetical protein 
BCORL1                0.042   BCL6 co-repressor-like 1 
OGFR                  0.040   opioid growth factor receptor 
FMNL1                 0.040   formin-like 1 
LOC100128719          0.040   PREDICTED: hypothetical protein, partial 
LOC100128719          0.040   PREDICTED: hypothetical protein, partial 
FBRSL1                0.040   fibrosin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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