Guide to the Human Genome
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Name: ATMIN Sequence: fasta or formatted (823aa) NCBI GI: 54792092
Description:

ATM interactor

Referenced in:

DNases, Recombination, and DNA Repair
Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         65           5
 C cysteine            2.3         19           2
 D aspartate           5.0         41           2
 E glutamate           5.6         46           2
 F phenylalanine       3.9         32           2
 G glycine             5.3         44           2
 H histidine           2.2         18           1
 I isoleucine          4.3         35           2
 K lysine              4.1         34           2
 L leucine             8.6         71           3
 M methionine          2.2         18           1
 N asparagine          4.9         40           2
 P proline             7.5         62           2
 Q glutamine           6.2         51           2
 R arginine            2.8         23           1
 S serine             12.4        102           2
 T threonine           8.6         71           2
 V valine              4.7         39           2
 W tryptophan          0.5          4           1
 Y tyrosine            1.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATM interactor 
ZNF362                0.015   zinc finger protein 362 
KLF10                 0.015   Kruppel-like factor 10 isoform b 
KLF10                 0.015   Kruppel-like factor 10 isoform a 
LOC654254             0.015   zinc finger protein LOC654254 
ZNF445                0.015   zinc finger protein 445 
ZEB1                  0.015   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.015   zinc finger E-box binding homeobox 1 isoform b [Hom...
MUC17                 0.015   mucin 17 
DSPP                  0.014   dentin sialophosphoprotein preproprotein 
ZNF691                0.014   zinc finger protein 691 
LOC100292052          0.014   PREDICTED: similar to hCG1773661 
LOC100287226          0.014   PREDICTED: similar to hCG1773661 
LOC100287226          0.014   PREDICTED: hypothetical protein XP_002343677 
ZNF384                0.013   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.013   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.013   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.013   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.013   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.013   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.013   nuclear matrix transcription factor 4 isoform d [Ho...
ZNF676                0.013   zinc finger protein 676 
ZNF83                 0.012   zinc finger protein 83 isoform b 
ZNF83                 0.012   zinc finger protein 83 isoform b 
ZNF83                 0.012   zinc finger protein 83 isoform a 
ZNF83                 0.012   zinc finger protein 83 isoform a 
ZNF83                 0.012   zinc finger protein 83 isoform a 
ZNF83                 0.012   zinc finger protein 83 isoform a 
ZNF83                 0.012   zinc finger protein 83 isoform a 
ZNF99                 0.012   zinc finger protein 99 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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