Guide to the Human Genome
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Name: LOC728317 Sequence: fasta or formatted (2061aa) NCBI GI: 113430659
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {2028aa} PREDICTED: hypothetical protein
alt prot {2061aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4        276           3
 C cysteine            1.9         40           1
 D aspartate           4.9        100           3
 E glutamate           2.8         57           3
 F phenylalanine       1.0         21           1
 G glycine             9.3        191           3
 H histidine           2.7         56           2
 I isoleucine          4.9        101           2
 K lysine              4.4         91           2
 L leucine             7.3        151           3
 M methionine          1.1         22           1
 N asparagine          1.2         24           1
 P proline             9.9        205           2
 Q glutamine           2.1         43           1
 R arginine           11.0        226           2
 S serine              9.3        191           3
 T threonine           7.5        155           2
 V valine              3.1         63           2
 W tryptophan          1.2         25           1
 Y tyrosine            1.1         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728317             0.998   PREDICTED: hypothetical protein 
LOC728317             0.871   PREDICTED: hypothetical protein 
LOC728307             0.760   PREDICTED: hypothetical protein 
MUM1                  0.075   melanoma ubiquitous mutated protein 
MUM1L1                0.071   melanoma associated antigen (mutated) 1-like 1 [Homo...
SRRM2                 0.021   splicing coactivator subunit SRm300 
NACA                  0.016   nascent polypeptide-associated complex alpha subuni...
LOC100133756          0.014   PREDICTED: hypothetical protein, partial 
MUC12                 0.012   PREDICTED: mucin 12 
MUC5B                 0.011   mucin 5, subtype B, tracheobronchial 
LOC100130716          0.010   PREDICTED: similar to mucin 11 
SRCAP                 0.009   Snf2-related CBP activator protein 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
COL3A1                0.009   collagen type III alpha 1 preproprotein 
IRS2                  0.009   insulin receptor substrate 2 
MUC5AC                0.009   mucin 5AC 
LOC100133714          0.009   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.008   PREDICTED: mucin 12 
MUC6                  0.008   mucin 6, gastric 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
LOC100293409          0.007   PREDICTED: similar to Mucin-19 
LOC100291118          0.007   PREDICTED: hypothetical protein XP_002347351 
COL27A1               0.007   collagen, type XXVII, alpha 1 
LOC100287737          0.007   PREDICTED: hypothetical protein XP_002343203 
LOC100130716          0.007   PREDICTED: similar to Mucin-12 
TPRX1                 0.007   tetra-peptide repeat homeobox 
MUC12                 0.007   PREDICTED: mucin 12, cell surface associated 
COL1A1                0.007   alpha 1 type I collagen preproprotein 
LOC100294420          0.007   PREDICTED: similar to mucin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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