Guide to the Human Genome
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Name: FAM22F Sequence: fasta or formatted (756aa) NCBI GI: 148806874
Description:

hypothetical protein LOC54754

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         66           3
 C cysteine            1.5         11           1
 D aspartate           2.9         22           2
 E glutamate           7.1         54           3
 F phenylalanine       2.0         15           1
 G glycine             8.9         67           2
 H histidine           2.2         17           2
 I isoleucine          1.3         10           1
 K lysine              4.6         35           3
 L leucine             9.3         70           3
 M methionine          1.7         13           1
 N asparagine          0.9          7           1
 P proline            15.3        116           5
 Q glutamine           6.5         49           2
 R arginine            6.1         46           2
 S serine              8.1         61           2
 T threonine           4.4         33           1
 V valine              6.2         47           2
 W tryptophan          1.2          9           1
 Y tyrosine            1.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54754 
FAM22B                0.823   PREDICTED: hypothetical protein isoform 1 
FAM22A                0.821   hypothetical protein LOC728118 
FAM22E                0.820   PREDICTED: hypothetical protein 
FAM22G                0.618   hypothetical protein LOC441457 
FAM22D                0.564   hypothetical protein LOC728130 
FAM22E                0.562   PREDICTED: hypothetical protein isoform 1 
C15orf55              0.295   nuclear protein in testis 
MAP1A                 0.023   microtubule-associated protein 1A 
SAMD1                 0.022   sterile alpha motif domain containing 1 
MLL2                  0.022   myeloid/lymphoid or mixed-lineage leukemia 2 
MNT                   0.022   MAX binding protein 
PCLO                  0.021   piccolo isoform 2 
PCLO                  0.021   piccolo isoform 1 
PRR12                 0.021   proline rich 12 
NCOR2                 0.020   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.020   nuclear receptor co-repressor 2 isoform 1 
WASL                  0.019   Wiskott-Aldrich syndrome gene-like protein 
ENAH                  0.019   enabled homolog isoform a 
ENAH                  0.019   enabled homolog isoform b 
BRD4                  0.019   bromodomain-containing protein 4 isoform long 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
LOC100291797          0.018   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.018   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.018   PREDICTED: hypothetical protein XP_002342316 
DIAPH1                0.017   diaphanous 1 isoform 2 
DIAPH1                0.017   diaphanous 1 isoform 1 
PELP1                 0.017   proline, glutamic acid and leucine rich protein 1 [...
TTN                   0.016   titin isoform N2-A 
APBB1IP               0.016   amyloid beta (A4) precursor protein-binding, family ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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