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Search of human proteins with 239751341
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751341 PREDICTED: hypothetical protein XP_002347812 [Homo
sapiens]
(137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751341 PREDICTED: hypothetical protein XP_002347812 [Homo ... 287 2e-78
gi|239745840 PREDICTED: hypothetical protein XP_002343602 [Homo ... 287 2e-78
gi|239756853 PREDICTED: similar to hCG2042405 [Homo sapiens] 269 6e-73
gi|17017976 wingless-type MMTV integration site family, member 9... 130 4e-31
gi|15082261 wingless-type MMTV integration site family, member 9... 73 8e-14
gi|17402916 wingless-type MMTV integration site family, member 1... 51 3e-07
gi|17402914 wingless-type MMTV integration site family, member 1... 51 3e-07
gi|16507239 wingless-type MMTV integration site family, member 6... 42 2e-04
gi|16936520 wingless-type MMTV integration site family, member 1... 40 6e-04
gi|16936522 wingless-type MMTV integration site family, member 1... 39 0.002
gi|17505191 wingless-type MMTV integration site family, member 7... 38 0.002
gi|13518017 wingless-type MMTV integration site family, member 2... 38 0.002
gi|13518021 wingless-type MMTV integration site family, member 2... 38 0.002
gi|40806205 wingless-type MMTV integration site family, member 5... 38 0.003
gi|17402922 wingless-type MMTV integration site family, member 4... 37 0.005
gi|239752226 PREDICTED: hypothetical protein XP_002348164 [Homo ... 36 0.009
gi|17505193 wingless-type MMTV integration site family, member 7... 36 0.009
gi|4507927 wingless-type MMTV integration site family member 2 p... 35 0.025
gi|4885655 wingless-type MMTV integration site family, member 1 ... 33 0.073
gi|151301137 AT-hook transcription factor [Homo sapiens] 30 0.48
gi|14249180 wingless-type MMTV integration site family, member 5... 29 1.1
gi|17402919 wingless-type MMTV integration site family, member 5... 29 1.1
gi|17999524 proacrosin binding protein sp32 precursor [Homo sapi... 28 1.8
gi|13540477 wingless-type MMTV integration site family, member 3... 28 1.8
gi|14916475 wingless-type MMTV integration site family, member 3... 28 2.4
gi|227497624 secretory protein LOC348174 [Homo sapiens] 28 2.4
gi|209977023 secretory protein LOC348174 [Homo sapiens] 28 2.4
gi|9506663 ring finger protein 186 [Homo sapiens] 28 2.4
gi|239754361 PREDICTED: hypothetical protein [Homo sapiens] 27 4.0
gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo ... 27 4.0
>gi|239751341 PREDICTED: hypothetical protein XP_002347812 [Homo
sapiens]
Length = 137
Score = 287 bits (734), Expect = 2e-78
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MLPFSLNFRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAET 60
MLPFSLNFRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAET
Sbjct: 1 MLPFSLNFRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAET 60
Query: 61 LWDAMHLGLECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIK 120
LWDAMHLGLECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIK
Sbjct: 61 LWDAMHLGLECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIK 120
Query: 121 KYLGKLFNSSSGPWMQP 137
KYLGKLFNSSSGPWMQP
Sbjct: 121 KYLGKLFNSSSGPWMQP 137
>gi|239745840 PREDICTED: hypothetical protein XP_002343602 [Homo
sapiens]
Length = 137
Score = 287 bits (734), Expect = 2e-78
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MLPFSLNFRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAET 60
MLPFSLNFRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAET
Sbjct: 1 MLPFSLNFRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAET 60
Query: 61 LWDAMHLGLECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIK 120
LWDAMHLGLECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIK
Sbjct: 61 LWDAMHLGLECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIK 120
Query: 121 KYLGKLFNSSSGPWMQP 137
KYLGKLFNSSSGPWMQP
Sbjct: 121 KYLGKLFNSSSGPWMQP 137
>gi|239756853 PREDICTED: similar to hCG2042405 [Homo sapiens]
Length = 144
Score = 269 bits (687), Expect = 6e-73
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 10 LTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAETLWDAMHLGL 69
LTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAETLWDAMHLGL
Sbjct: 17 LTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAETLWDAMHLGL 76
Query: 70 ECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIKKYLGKLFNS 129
ECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIKKYLGKLFNS
Sbjct: 77 ECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASWLNLGSIKKYLGKLFNS 136
Query: 130 SSGPWMQP 137
SSGPWMQP
Sbjct: 137 SSGPWMQP 144
>gi|17017976 wingless-type MMTV integration site family, member 9B
precursor [Homo sapiens]
Length = 357
Score = 130 bits (326), Expect = 4e-31
Identities = 69/86 (80%), Positives = 71/86 (82%), Gaps = 2/86 (2%)
Query: 8 FRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAETLWDAMHL 67
F LT EVL PFPGLGTA APAQG AHLKQCDLLKLSR+QKQLC REP LAETL DA HL
Sbjct: 25 FGLTGREVLTPFPGLGTAAAPAQGGAHLKQCDLLKLSRRQKQLCRREPGLAETLRDAAHL 84
Query: 68 G-LECQFQFRHERWNYSLEAGLVSLL 92
G LECQFQFRHERWN SLE G + LL
Sbjct: 85 GLLECQFQFRHERWNCSLE-GRMGLL 109
>gi|15082261 wingless-type MMTV integration site family, member 9A
[Homo sapiens]
Length = 365
Score = 72.8 bits (177), Expect = 8e-14
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 3 PFSLNFRLTRWEVLMPFPGLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAETLW 62
P + F LT E L P T A +AH K CD LKL R+Q+++C R+P +AETL
Sbjct: 26 PSAAYFGLTGSEPLTILPL--TLEPEAAAQAHYKACDRLKLERKQRRMCRRDPGVAETLV 83
Query: 63 DAMHL-GLECQFQFRHERWNYSLE 85
+A+ + LECQFQFR ERWN +LE
Sbjct: 84 EAVSMSALECQFQFRFERWNCTLE 107
>gi|17402916 wingless-type MMTV integration site family, member 16
isoform 1 precursor [Homo sapiens]
Length = 365
Score = 50.8 bits (120), Expect = 3e-07
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 38 CDLLKLSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYSLEAGLVSLLMQPE 96
C L L+ +QK+LC R+P L ++ + LG+ EC QFRHERWN + A + M
Sbjct: 47 CANLPLNSRQKELCKRKPYLLPSIREGARLGIQECGSQFRHERWNCMITAAATTAPMGAS 106
Query: 97 GALGEEL 103
G EL
Sbjct: 107 PLFGYEL 113
>gi|17402914 wingless-type MMTV integration site family, member 16
isoform 2 [Homo sapiens]
Length = 355
Score = 50.8 bits (120), Expect = 3e-07
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 38 CDLLKLSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYSLEAGLVSLLMQPE 96
C L L+ +QK+LC R+P L ++ + LG+ EC QFRHERWN + A + M
Sbjct: 37 CANLPLNSRQKELCKRKPYLLPSIREGARLGIQECGSQFRHERWNCMITAAATTAPMGAS 96
Query: 97 GALGEEL 103
G EL
Sbjct: 97 PLFGYEL 103
>gi|16507239 wingless-type MMTV integration site family, member 6
precursor [Homo sapiens]
Length = 365
Score = 42.0 bits (97), Expect = 2e-04
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 42 KLSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYSLEAGLVSLLMQPE 96
+L+ +Q +LC EP + L LG+ ECQFQFR RWN S + ++Q +
Sbjct: 46 RLAGRQAELCQAEPEVVAELARGARLGVRECQFQFRFRRWNCSSHSKAFGRILQQD 101
>gi|16936520 wingless-type MMTV integration site family, member 10A
precursor [Homo sapiens]
Length = 417
Score = 40.0 bits (92), Expect = 6e-04
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYS 83
LSR+Q ++C R P +A + + + + ECQ QFR +RWN S
Sbjct: 67 LSRRQMEVCVRHPDVAASAIQGIQIAIHECQHQFRDQRWNCS 108
>gi|16936522 wingless-type MMTV integration site family, member 10B
precursor [Homo sapiens]
Length = 389
Score = 38.5 bits (88), Expect = 0.002
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYS-LEAG 87
LS++Q LC R P + + +H+ + ECQ Q R +RWN S LE G
Sbjct: 54 LSKRQLGLCLRNPDVTASALQGLHIAVHECQHQLRDQRWNCSALEGG 100
>gi|17505191 wingless-type MMTV integration site family, member 7A
precursor [Homo sapiens]
Length = 349
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYSLEAGLVSLLMQPEGALGE 101
L+ +Q+ +C P + + +GL ECQFQFR+ RWN S + G+
Sbjct: 44 LAPRQRAICQSRPDAIIVIGEGSQMGLDECQFQFRNGRWNCS--------ALGERTVFGK 95
Query: 102 ELQVPQPRAA 111
EL+V AA
Sbjct: 96 ELKVGSREAA 105
>gi|13518017 wingless-type MMTV integration site family, member 2B
isoform WNT-2B1 [Homo sapiens]
Length = 372
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 38 CDLLK-LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWN 81
CD + L +Q+QLC R P + ++ + + ECQ QFRH RWN
Sbjct: 53 CDNIPGLVSRQRQLCQRYPDIMRSVGEGAREWIRECQHQFRHHRWN 98
>gi|13518021 wingless-type MMTV integration site family, member 2B
isoform WNT-2B2 [Homo sapiens]
Length = 391
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 38 CDLLK-LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWN 81
CD + L +Q+QLC R P + ++ + + ECQ QFRH RWN
Sbjct: 72 CDNIPGLVSRQRQLCQRYPDIMRSVGEGAREWIRECQHQFRHHRWN 117
>gi|40806205 wingless-type MMTV integration site family, member 5A
precursor [Homo sapiens]
Length = 380
Score = 37.7 bits (86), Expect = 0.003
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 40 LLKLSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYS 83
L LS+ QK+LC + + + G+ ECQ+QFRH RWN S
Sbjct: 72 LAGLSQGQKKLCHLYQDHMQYIGEGAKTGIKECQYQFRHRRWNCS 116
>gi|17402922 wingless-type MMTV integration site family, member 4
precursor [Homo sapiens]
Length = 351
Score = 37.0 bits (84), Expect = 0.005
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 38 CDLLK-LSRQQKQLCGREPSLAETLWDAMHLGLE-CQFQFRHERWNYS 83
C+ LK L ++Q Q+C R + +++ L +E CQ+QFR+ RWN S
Sbjct: 43 CEKLKGLIQRQVQMCKRNLEVMDSVRRGAQLAIEECQYQFRNRRWNCS 90
>gi|239752226 PREDICTED: hypothetical protein XP_002348164 [Homo
sapiens]
Length = 661
Score = 36.2 bits (82), Expect = 0.009
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYSLEAGLVSLLMQPEGALGE 101
L+ +Q+ +C P + + +G+ ECQ+QFR RWN S + + G+
Sbjct: 43 LAPRQRAICQSRPDAIIVIGEGAQMGINECQYQFRFGRWNCS--------ALGEKTVFGQ 94
Query: 102 ELQVPQPRAA 111
EL+V AA
Sbjct: 95 ELRVGSREAA 104
>gi|17505193 wingless-type MMTV integration site family, member 7B
precursor [Homo sapiens]
Length = 349
Score = 36.2 bits (82), Expect = 0.009
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYSLEAGLVSLLMQPEGALGE 101
L+ +Q+ +C P + + +G+ ECQ+QFR RWN S + + G+
Sbjct: 44 LAPRQRAICQSRPDAIIVIGEGAQMGINECQYQFRFGRWNCS--------ALGEKTVFGQ 95
Query: 102 ELQVPQPRAA 111
EL+V AA
Sbjct: 96 ELRVGSREAA 105
>gi|4507927 wingless-type MMTV integration site family member 2
precursor [Homo sapiens]
Length = 360
Score = 34.7 bits (78), Expect = 0.025
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 29 AQGRAHLKQCDLLK-LSRQQKQLCGREPSLAETLWDAM-HLGLECQFQFRHERWN 81
A G + CD + L Q+QLC R P + + + ECQ QFR RWN
Sbjct: 32 ATGGSSRVMCDNVPGLVSSQRQLCHRHPDVMRAISQGVAEWTAECQHQFRQHRWN 86
>gi|4885655 wingless-type MMTV integration site family, member 1
precursor [Homo sapiens]
Length = 370
Score = 33.1 bits (74), Expect = 0.073
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWN 81
LSR+Q++L + P + ++ + + EC++QFR+ RWN
Sbjct: 64 LSRKQRRLIRQNPGILHSVSGGLQSAVRECKWQFRNRRWN 103
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 30.4 bits (67), Expect = 0.48
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 58 AETLWDAMHLGLECQFQFRHERWNYSLEAGLVSLLMQPEGALGEELQVPQPRAASW 113
AE D + LG + + N+S+ G+V P+G +PQPR+A W
Sbjct: 460 AENTIDQLRLGAKVNLFSDPPQPNHSIHTGMV-----PQGTKVLSFTIPQPRSAEW 510
>gi|14249180 wingless-type MMTV integration site family, member 5B
precursor [Homo sapiens]
Length = 359
Score = 29.3 bits (64), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYS 83
LS Q++LC + + G+ ECQ QFR RWN S
Sbjct: 54 LSPGQRKLCQLYQEHMAYIGEGAKTGIKECQHQFRQRRWNCS 95
>gi|17402919 wingless-type MMTV integration site family, member 5B
precursor [Homo sapiens]
Length = 359
Score = 29.3 bits (64), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 43 LSRQQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWNYS 83
LS Q++LC + + G+ ECQ QFR RWN S
Sbjct: 54 LSPGQRKLCQLYQEHMAYIGEGAKTGIKECQHQFRQRRWNCS 95
>gi|17999524 proacrosin binding protein sp32 precursor [Homo
sapiens]
Length = 543
Score = 28.5 bits (62), Expect = 1.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 21 GLGTAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSLAETLWDAMH 66
G G +V + GR H+ C L + + C E SL D H
Sbjct: 355 GFGKSVCDSLGRRHMSTCALCDFCSLKLEQCHSEASLQRQQCDTSH 400
>gi|13540477 wingless-type MMTV integration site family, member 3
[Homo sapiens]
Length = 355
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 46 QQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWN 81
+Q + C + ++ + + LG+ ECQ QFR RWN
Sbjct: 54 KQLRFCRNYIEIMPSVAEGVKLGIQECQHQFRGRRWN 90
>gi|14916475 wingless-type MMTV integration site family, member 3A
[Homo sapiens]
Length = 352
Score = 28.1 bits (61), Expect = 2.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 46 QQKQLCGREPSLAETLWDAMHLGL-ECQFQFRHERWN 81
+Q + C + ++ + + +G+ ECQ QFR RWN
Sbjct: 51 KQLRFCRNYVEIMPSVAEGIKIGIQECQHQFRGRRWN 87
>gi|227497624 secretory protein LOC348174 [Homo sapiens]
Length = 446
Score = 28.1 bits (61), Expect = 2.4
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 28 PAQGRAHLKQCD-LLKLSRQQKQLCGRE-PSLAETLWDAMHLGLECQFQFRHERWNYS-L 84
PA L D L +L++ + LCG PSLA LW + +G WN L
Sbjct: 65 PAADMRRLDWSDSLAQLAQARAALCGTPTPSLASGLWRTLQVG-----------WNMQLL 113
Query: 85 EAGLVSLL 92
AGLVS +
Sbjct: 114 PAGLVSFV 121
>gi|209977023 secretory protein LOC348174 [Homo sapiens]
Length = 446
Score = 28.1 bits (61), Expect = 2.4
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 28 PAQGRAHLKQCD-LLKLSRQQKQLCGRE-PSLAETLWDAMHLGLECQFQFRHERWNYS-L 84
PA L D L +L++ + LCG PSLA LW + +G WN L
Sbjct: 65 PAADMRRLDWSDSLAQLAQARAALCGTPTPSLASGLWRTLQVG-----------WNMQLL 113
Query: 85 EAGLVSLL 92
AGLVS +
Sbjct: 114 PAGLVSFV 121
>gi|9506663 ring finger protein 186 [Homo sapiens]
Length = 227
Score = 28.1 bits (61), Expect = 2.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 24 TAVAPAQGRAHLKQCDLLKLSRQQKQLCGREPSL 57
TAVAPA G + +CDL L ++ C R P L
Sbjct: 22 TAVAPAGGHSGSTECDLECLVCREPYSCPRLPKL 55
>gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 27.3 bits (59), Expect = 4.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 11 TRWEVLMPFPGLGTAVAPAQGRA 33
+RW + P PG AVAPA G A
Sbjct: 61 SRWPLPRPVPGSPAAVAPAPGAA 83
>gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo
sapiens]
Length = 165
Score = 27.3 bits (59), Expect = 4.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 11 TRWEVLMPFPGLGTAVAPAQGRA 33
+RW + P PG AVAPA G A
Sbjct: 61 SRWPLPRPVPGSPAAVAPAPGAA 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,980,054
Number of Sequences: 37866
Number of extensions: 254870
Number of successful extensions: 492
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 40
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.