Guide to the Human Genome
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Name: LOC100292629 Sequence: fasta or formatted (165aa) NCBI GI: 239754361
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         18           3
 C cysteine            1.2          2           1
 D aspartate           1.8          3           1
 E glutamate           3.6          6           3
 F phenylalanine       1.2          2           1
 G glycine             8.5         14           1
 H histidine           4.8          8           1
 I isoleucine          4.2          7           1
 K lysine              4.8          8           1
 L leucine             7.3         12           2
 M methionine          1.2          2           1
 N asparagine          2.4          4           1
 P proline            13.3         22           2
 Q glutamine           2.4          4           1
 R arginine           13.9         23           3
 S serine              9.1         15           2
 T threonine           2.4          4           1
 V valine              4.2          7           1
 W tryptophan          2.4          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289960          1.000   PREDICTED: hypothetical protein XP_002346853 
LOC100286905          1.000   PREDICTED: hypothetical protein XP_002342691 
LOC100127891          0.053   PREDICTED: similar to hCG2042508 
LOC100127891          0.053   PREDICTED: similar to hCG2042508 
LOC100127891          0.053   PREDICTED: similar to hCG2042508 
LOC100131102          0.053   PREDICTED: hypothetical protein 
LRRC38                0.050   PREDICTED: leucine rich repeat containing 38 
LOC100131102          0.050   PREDICTED: hypothetical protein 
LRRC38                0.050   PREDICTED: leucine rich repeat containing 38 
KRTAP4-6              0.047   PREDICTED: keratin associated protein 4.6 
LOC100130360          0.043   PREDICTED: hypothetical protein 
ZNF828                0.043   zinc finger protein 828 
TEX2                  0.040   testis expressed sequence 2 
C9orf86               0.037   Rab-like GTP-binding protein 1 isoform 1 
ATXN2                 0.037   ataxin 2 
TTBK1                 0.037   tau tubulin kinase 1 
RALGDS                0.037   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.037   ral guanine nucleotide dissociation stimulator isof...
LOC100290551          0.037   PREDICTED: hypothetical protein XP_002346417 
LOC100287437          0.037   PREDICTED: hypothetical protein XP_002342117 
GNAS                  0.037   GNAS complex locus XLas 
CROCC                 0.034   ciliary rootlet coiled-coil 
LOC100292488          0.034   PREDICTED: hypothetical protein 
LOC100289965          0.034   PREDICTED: hypothetical protein XP_002347141 
KRTAP4-9              0.034   PREDICTED: keratin associated protein 4-9 
LOC100289007          0.034   PREDICTED: hypothetical protein XP_002342994 
ANKRD33B              0.031   PREDICTED: ankyrin repeat domain 33B 
TAF4                  0.031   TBP-associated factor 4 
SALL3                 0.031   sal-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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