Guide to the Human Genome
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Name: CLEC18A Sequence: fasta or formatted (446aa) NCBI GI: 209977023
Description:

secretory protein LOC348174

Referenced in:

Lectin Families
Protease Inhibitors

Other entries for this name:
alt mRNA [446aa] secretory protein LOC348174
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         45           2
 C cysteine            6.3         28           1
 D aspartate           3.4         15           1
 E glutamate           4.5         20           3
 F phenylalanine       4.3         19           1
 G glycine             8.3         37           2
 H histidine           3.6         16           1
 I isoleucine          2.5         11           1
 K lysine              2.9         13           2
 L leucine             8.7         39           3
 M methionine          1.6          7           1
 N asparagine          3.6         16           1
 P proline             4.3         19           2
 Q glutamine           5.8         26           1
 R arginine            6.7         30           2
 S serine              7.0         31           2
 T threonine           5.4         24           2
 V valine              5.2         23           2
 W tryptophan          3.4         15           1
 Y tyrosine            2.7         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secretory protein LOC348174 
CLEC18A               1.000   secretory protein LOC348174 
CLEC18C               0.995   mannose receptor-like 
CLEC18B               0.982   C-type lectin domain family 18, member B 
PI16                  0.077   protease inhibitor 16 precursor 
CRISPLD2              0.074   cysteine-rich secretory protein LCCL domain containi...
PI15                  0.073   protease inhibitor 15 preproprotein 
GLIPR1L1              0.072   GLI pathogenesis-related 1 like 1 
R3HDML                0.071   R3H domain containing-like 
CRISP3                0.071   cysteine-rich secretory protein 3 
CRISPLD1              0.066   cysteine-rich secretory protein LCCL domain containi...
CRISP2                0.063   cysteine-rich secretory protein 2 
CRISP2                0.063   cysteine-rich secretory protein 2 
CRISP2                0.063   cysteine-rich secretory protein 2 
CRISP2                0.063   cysteine-rich secretory protein 2 
CRISP2                0.063   cysteine-rich secretory protein 2 
GLIPR1                0.062   GLI pathogenesis-related 1 precursor 
CRISP1                0.059   acidic epididymal glycoprotein-like 1 isoform 1 prec...
NCAN                  0.049   chondroitin sulfate proteoglycan 3 
CRISP1                0.048   acidic epididymal glycoprotein-like 1 isoform 2 prec...
MRC1                  0.047   mannose receptor C type 1 precursor 
MRC1L1                0.047   mannose receptor, C type 1-like 1 
VCAN                  0.045   versican isoform 2 
VCAN                  0.044   versican isoform 1 
GLIPR1L2              0.044   GLI pathogenesis-related 1 like 2 
MEGF10                0.041   multiple EGF-like-domains 10 
DNER                  0.036   delta-notch-like EGF repeat-containing transmembran...
NOTCH1                0.036   notch1 preproprotein 
ACAN                  0.035   aggrecan isoform 2 precursor 
CLEC3B                0.035   C-type lectin domain family 3, member B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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