Guide to the Human Genome
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Search of human proteins with 239750937

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750937 PREDICTED: similar to FLJ00402 protein [Homo
sapiens]
         (166 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750937 PREDICTED: similar to FLJ00402 protein [Homo sapiens]    359   e-100
gi|239745331 PREDICTED: similar to FLJ00402 protein [Homo sapiens]    359   e-100
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            44   5e-05
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]        39   0.002
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ...    38   0.003
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]            38   0.003
gi|34304381 inversin isoform a [Homo sapiens]                          38   0.005
gi|34304379 inversin isoform b [Homo sapiens]                          38   0.005
gi|163965366 nascent polypeptide-associated complex alpha subuni...    38   0.005
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    37   0.006
gi|241982780 programmed cell death 6 interacting protein isoform...    36   0.013
gi|22027538 programmed cell death 6 interacting protein isoform ...    36   0.013
gi|146134388 YLP motif containing 1 [Homo sapiens]                     35   0.029
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    35   0.038
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom...    35   0.038
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap...    35   0.038
gi|55750053 atrophin-1 [Homo sapiens]                                  35   0.038
gi|55750041 atrophin-1 [Homo sapiens]                                  35   0.038
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]         34   0.050
gi|45120115 hypothetical protein LOC56905 [Homo sapiens]               34   0.050
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    34   0.066
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]               34   0.066
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ...    33   0.086
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ...    33   0.086
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ...    33   0.086
gi|81174549 hypothetical protein LOC84792 [Homo sapiens]               33   0.086
gi|154146199 sal-like 3 [Homo sapiens]                                 33   0.086
gi|169162422 PREDICTED: hypothetical protein [Homo sapiens]            33   0.11 
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              33   0.11 
gi|4506835 small inducible cytokine A21 precursor [Homo sapiens]       33   0.15 

>gi|239750937 PREDICTED: similar to FLJ00402 protein [Homo sapiens]
          Length = 166

 Score =  359 bits (921), Expect = e-100
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60
           MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT
Sbjct: 1   MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60

Query: 61  LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
           LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP
Sbjct: 61  LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120

Query: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166
           GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT
Sbjct: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166


>gi|239745331 PREDICTED: similar to FLJ00402 protein [Homo sapiens]
          Length = 166

 Score =  359 bits (921), Expect = e-100
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60
           MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT
Sbjct: 1   MAKREYSSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPT 60

Query: 61  LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
           LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP
Sbjct: 61  LIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120

Query: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166
           GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT
Sbjct: 121 GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTHT 166


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 46/145 (31%), Positives = 53/145 (36%), Gaps = 30/145 (20%)

Query: 21  VGEETVPGVRVSLVRT---MPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWGRFSHSHS 77
           VG    P V  SL R       RCHC    LP PP L P L +  PP        S + S
Sbjct: 151 VGSCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAPS 210

Query: 78  QTPAPRIWAQGPRSRDAGRG-PAPK--GRG------------------GRGSACCLPWGR 116
            +P PR   +      AG G P P+   RG                  GR   C L  G 
Sbjct: 211 LSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCAL--GS 268

Query: 117 SEVPGTPVRVPAA----AAREWAKR 137
             +P  P     A    AAR+W KR
Sbjct: 269 PPIPAGPAAPGRAGERRAARQWRKR 293



 Score = 30.4 bits (67), Expect = 0.73
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 79  TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPV-RVPAAAAREW 134
           TP PR  A G         P P+G    G A C P  R+  P  P  + P   AREW
Sbjct: 8   TPHPRTPAPGCPEV----APQPEGTDAPGPAVCSPTARAPPPILPAPQRPPTRAREW 60



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 92  RDAGRGPAPKGRGGRGSACCLPW-GRSEVPGTPVRVPAAAAREWAKREHA 140
           R+A  GPAP     RGS    P   R   P +  + PAAAAR    R+ +
Sbjct: 93  REASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRS 142


>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
          Length = 1488

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 32/77 (41%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 46   PILPNPPSLPPSLPTL--IPPPFLL---WGRFSHSHSQTPAPRIWAQGPRSRDAGR-GPA 99
            P LP PP  PP LP L  IPPP       G   H H+  P P     GP+    GR G A
Sbjct: 1288 PSLPPPPQQPPPLPQLGSIPPPPASAPPVGPHRHFHAHGPVP-----GPQHYTLGRPGRA 1342

Query: 100  PKGRGGRGSACCLPWGR 116
            P+ RG  G     P GR
Sbjct: 1343 PR-RGAGGHPQFAPHGR 1358


>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
           sapiens]
          Length = 239

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 12/87 (13%)

Query: 76  HSQTPAPRIWAQGPRSRDAGRGPAPKGRGGR---------GSACCLPWGRSEVPGTPVRV 126
           HS  P PR   Q  ++R  G GP+  G  GR         G+   LP G S +P  P  +
Sbjct: 96  HSWAPRPR---QASQTRGGGGGPSLPGPAGRPSGRSRSRVGARGRLPSGGSHLPQPPRSL 152

Query: 127 PAAAAREWAKREHACISKKPARSLDFP 153
            AA+A +   RE      +P  +  FP
Sbjct: 153 AAASAWQAVARELGLSGPRPTEAPPFP 179


>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 322

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 49/172 (28%), Positives = 59/172 (34%), Gaps = 47/172 (27%)

Query: 30  RVSLVRTMPSRCHCHSPILPNPP-----------SLP------------------PSLPT 60
           R SL   +P +CH H    P PP           S P                  P LP 
Sbjct: 160 RASLALGLPIQCHRHISTEPPPPPPAAPATGSAQSRPRPAPARAPLIAPGAHQSAPPLPV 219

Query: 61  L--IPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGR--GGRGSACCLP--- 113
           L  +P P  L  R   + +   AP     G +S  + RGP P+ +  G R  A C P   
Sbjct: 220 LGRLPAPLPLQLRAGGASTGLAAPSPGRGGKQSEISFRGPGPRAQHPGCRLRAGCEPSCG 279

Query: 114 -WGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPST 164
             GR      P R P AA            +  PA    F   AL PR P T
Sbjct: 280 RLGRGYQQRLPSRSPHAAP----------AAPAPALRSSFMFLALFPRKPGT 321


>gi|34304381 inversin isoform a [Homo sapiens]
          Length = 1065

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 52  PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACC 111
           P   P LP+    P     R S + S+ P     AQGP  RD+   P     G  G A  
Sbjct: 620 PQALPCLPSTQDVP----SRQSRAPSKQPPAGNVAQGPEPRDSRGSPG----GSLGGALQ 671

Query: 112 LPWG-RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPS 163
                 S++ GT  R P   ARE +K + AC+  +P    D    + HP  PS
Sbjct: 672 KEQHVSSDLQGTNSRRPNETAREHSKGQSACVHFRPNEGSD---GSRHPGVPS 721


>gi|34304379 inversin isoform b [Homo sapiens]
          Length = 895

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 52  PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACC 111
           P   P LP+    P     R S + S+ P     AQGP  RD+   P     G  G A  
Sbjct: 620 PQALPCLPSTQDVP----SRQSRAPSKQPPAGNVAQGPEPRDSRGSPG----GSLGGALQ 671

Query: 112 LPWG-RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPS 163
                 S++ GT  R P   ARE +K + AC+  +P    D    + HP  PS
Sbjct: 672 KEQHVSSDLQGTNSRRPNETAREHSKGQSACVHFRPNEGSD---GSRHPGVPS 721


>gi|163965366 nascent polypeptide-associated complex alpha subunit
           isoform a [Homo sapiens]
          Length = 2078

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 45  SPILPNPPSLPPS---LPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPK 101
           +P+ P   +LPP     P+++  PF   G  + +  Q PA  + +  P+   A   PAPK
Sbjct: 871 TPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARAT--PAPK 928

Query: 102 GRGGRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKP 146
           G     S    P   +  P +P   PA  + +WA    A     P
Sbjct: 929 GIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSP 973



 Score = 28.9 bits (63), Expect = 2.1
 Identities = 40/163 (24%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 8    STPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIP---- 63
            +TP P   P  P     +  G   +     PS     +P    PPS P   P   P    
Sbjct: 978  ATPSPKGAPTPPAATPPSPKGGPAT-----PSPKGAPTPPAVTPPS-PKGSPAATPFPKG 1031

Query: 64   ---PPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVP 120
               PP         S + TP P+    G  +  A   P+PKG     S    P   +  P
Sbjct: 1032 ASTPPAATPPSPKGSPAATPLPK----GAPTTPAATLPSPKGGPATPSLKGAPTPPAATP 1087

Query: 121  GTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPS 163
             +P   PA  + + A    A     P   L  P     P +P+
Sbjct: 1088 PSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPA 1130


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
            sapiens]
          Length = 1336

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 46   PILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGG 105
            P  P+PP+ P +  T + PP     R +      PAP  W +         GP   G GG
Sbjct: 1025 PGFPSPPAPPAAAATAVGPPLC---RLAFEDESPPAPARWPRSDPESQPLLGPGAGGAGG 1081

Query: 106  RGSA 109
             G A
Sbjct: 1082 TGGA 1085


>gi|241982780 programmed cell death 6 interacting protein isoform 2
           [Homo sapiens]
          Length = 873

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 23  EETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSL---PTLIPPPFLLWGRFSHSHSQT 79
           E + P +     ++ P+  H  +P  P P ++PP+    P   PPP L   R   + + +
Sbjct: 721 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPS 780

Query: 80  PAPRIWAQGPRSRDAGRGPAPKGRG 104
           P     A    S+  G  P P+ +G
Sbjct: 781 PVGAGTAAPAPSQTPGSAPPPQAQG 805


>gi|22027538 programmed cell death 6 interacting protein isoform 1
           [Homo sapiens]
          Length = 868

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 23  EETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSL---PTLIPPPFLLWGRFSHSHSQT 79
           E + P +     ++ P+  H  +P  P P ++PP+    P   PPP L   R   + + +
Sbjct: 716 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPS 775

Query: 80  PAPRIWAQGPRSRDAGRGPAPKGRG 104
           P     A    S+  G  P P+ +G
Sbjct: 776 PVGAGTAAPAPSQTPGSAPPPQAQG 800


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 35.0 bits (79), Expect = 0.029
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 6   YSSTPLPLDYPKQPEVGEETVPGVRV-SLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPP 64
           YS  P PL     P +     P V   +L  T+P       P +P PP +PPSLPT +PP
Sbjct: 523 YSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVPP------PGMP-PPVMPPSLPTSVPP 575

Query: 65  P 65
           P
Sbjct: 576 P 576



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 46  PILPNPPSLPPSLPTLIPPPFL 67
           P +P PP LPPSLP  + PP L
Sbjct: 531 PTMP-PPVLPPSLPPPVMPPAL 551


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 34.7 bits (78), Expect = 0.038
 Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 34/181 (18%)

Query: 10  PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLI-----PP 64
           PL L+ P  P +     P     ++  +       SP +P PP   P  P L      PP
Sbjct: 175 PLLLEPPPPPSMAPPPPP-----VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229

Query: 65  PFLLWGRFSHSHSQTPAPRIWAQGP------------RSRDAGRGPAPKGRGG-RGSAC- 110
           P       + +   T   R++  G             R  +A R   P+     +GSA  
Sbjct: 230 PVPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289

Query: 111 -------CLPWGRSEVPGTPVR---VPAAAAREWAKREHACISKKPARSLDFPVFALHPR 160
                    P      P TPVR   +P   A+E  ++E     K P+R    P F + P 
Sbjct: 290 PNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPA 349

Query: 161 S 161
           S
Sbjct: 350 S 350


>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 34.7 bits (78), Expect = 0.038
 Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 34/181 (18%)

Query: 10  PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLI-----PP 64
           PL L+ P  P +     P     ++  +       SP +P PP   P  P L      PP
Sbjct: 175 PLLLEPPPPPSMAPPPPP-----VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229

Query: 65  PFLLWGRFSHSHSQTPAPRIWAQGP------------RSRDAGRGPAPKGRGG-RGSAC- 110
           P       + +   T   R++  G             R  +A R   P+     +GSA  
Sbjct: 230 PVPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289

Query: 111 -------CLPWGRSEVPGTPVR---VPAAAAREWAKREHACISKKPARSLDFPVFALHPR 160
                    P      P TPVR   +P   A+E  ++E     K P+R    P F + P 
Sbjct: 290 PNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPA 349

Query: 161 S 161
           S
Sbjct: 350 S 350


>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
           sapiens]
          Length = 1188

 Score = 34.7 bits (78), Expect = 0.038
 Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 34/181 (18%)

Query: 10  PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLI-----PP 64
           PL L+ P  P +     P     ++  +       SP +P PP   P  P L      PP
Sbjct: 175 PLLLEPPPPPSMAPPPPP-----VLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPP 229

Query: 65  PFLLWGRFSHSHSQTPAPRIWAQGP------------RSRDAGRGPAPKGRGG-RGSAC- 110
           P       + +   T   R++  G             R  +A R   P+     +GSA  
Sbjct: 230 PVPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289

Query: 111 -------CLPWGRSEVPGTPVR---VPAAAAREWAKREHACISKKPARSLDFPVFALHPR 160
                    P      P TPVR   +P   A+E  ++E     K P+R    P F + P 
Sbjct: 290 PNPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPA 349

Query: 161 S 161
           S
Sbjct: 350 S 350


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 34.7 bits (78), Expect = 0.038
 Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 46  PILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQ-------GPRSRDAGRGP 98
           P  P P + P   P L PPP L   R  ++ S +P P + AQ        P +   G G 
Sbjct: 286 PSAPPPANFPHVTPNLPPPPAL---RPLNNASASP-PGLGAQPLPGHLPSPHAMGQGMGG 341

Query: 99  AP----KGRGGRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPV 154
            P    KG     S   LP   S  P  P+R P +++   +    +  S   + +  FP 
Sbjct: 342 LPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPA 401

Query: 155 FALHPRSP 162
               P  P
Sbjct: 402 SQALPSYP 409



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7   SSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPIL---PNPPSLPPSLPTLIP 63
           ++TP        P     T PG R +     P      SP +   P PP+ P  LP+L P
Sbjct: 651 TATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPP 710

Query: 64  PP 65
           PP
Sbjct: 711 PP 712


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 34.7 bits (78), Expect = 0.038
 Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 46  PILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQ-------GPRSRDAGRGP 98
           P  P P + P   P L PPP L   R  ++ S +P P + AQ        P +   G G 
Sbjct: 286 PSAPPPANFPHVTPNLPPPPAL---RPLNNASASP-PGLGAQPLPGHLPSPHAMGQGMGG 341

Query: 99  AP----KGRGGRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPV 154
            P    KG     S   LP   S  P  P+R P +++   +    +  S   + +  FP 
Sbjct: 342 LPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPA 401

Query: 155 FALHPRSP 162
               P  P
Sbjct: 402 SQALPSYP 409



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7   SSTPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPIL---PNPPSLPPSLPTLIP 63
           ++TP        P     T PG R +     P      SP +   P PP+ P  LP+L P
Sbjct: 651 TATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPP 710

Query: 64  PP 65
           PP
Sbjct: 711 PP 712


>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
          Length = 1805

 Score = 34.3 bits (77), Expect = 0.050
 Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 19/100 (19%)

Query: 42   HCHSPILPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPK 101
            H HS  LP   S   S+ +   PP  +W      H ++  P  WA G RSR   +G  P 
Sbjct: 1430 HSHSTTLPRDYSTLTSVSSHGLPP--IW-----EHGRSRLPLSWALGSRSRAQMKG-FPP 1481

Query: 102  GRGGR------GSACCLPWG-----RSEVPGTPVRVPAAA 130
             RG R      G      WG      + VP TP R+  +A
Sbjct: 1482 SRGPRDSIILAGRPAAPSWGPDSRLTAGVPDTPTRLVFSA 1521


>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
          Length = 1047

 Score = 34.3 bits (77), Expect = 0.050
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 8   STPLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFL 67
           STP     P QP     + P + + ++   P    C S  LP+PP++  + P   P P  
Sbjct: 669 STPTSAPAPTQPAPTPTSGP-IGLRILAQQPLSVTCFSLALPSPPAVAVASPAPAPAP-- 725

Query: 68  LWGRFSHSHSQTPAPRIWAQGPRS-RDAGRGPAP 100
                      +PAP   AQ P S RD    PAP
Sbjct: 726 -----------SPAP-ARAQAPASARDPAPAPAP 747


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
           sapiens]
          Length = 2715

 Score = 33.9 bits (76), Expect = 0.066
 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 49  PNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGP-APKGRGGRG 107
           P PP  PP LP+  PPP            ++P P + A   R R  GR P  P  R  R 
Sbjct: 432 PPPPVSPPPLPSPPPPP------AQEEQEESPPPVVPATCSRKR--GRPPLTPSQRAERE 483

Query: 108 SACCLPWGRSEVPGTP 123
           +A   P G S    TP
Sbjct: 484 AARAGPEGTSPPTPTP 499



 Score = 32.7 bits (73), Expect = 0.15
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 17/94 (18%)

Query: 11   LPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPPFLLWG 70
            L LD P +P  GEE+            P      SP+LP P   PP +P   PP  LL  
Sbjct: 2335 LDLDRPGEP-AGEES------------PGPLQERSPLLPLPEDGPPQVPD-GPPDLLLES 2380

Query: 71   RFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRG 104
            ++ H   +  +     + P S D     APK  G
Sbjct: 2381 QWHHYSGEASSSE---EEPPSPDDKENQAPKRTG 2411



 Score = 28.9 bits (63), Expect = 2.1
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 10  PLPLDYPKQPEVGEET---VPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIPPP 65
           P P+  P +      T   +P  R S++R    R    +  LP PP  PP  P   PPP
Sbjct: 577 PAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPPPAPPPPPAPSPPP 635



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 96  RGPAPKGRGGRGSACCLPWGR-SEVPGTPVRVPA 128
           RG AP+GRG +     LP  R ++V  TP + PA
Sbjct: 145 RGRAPRGRGRKHKTTPLPPPRLADVAPTPPKTPA 178



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 48  LPNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGG 105
           +P P   PP +P          G +       P P    +G +S   GRG   +GRGG
Sbjct: 247 IPKPEPPPPVVPVKHQT-----GSWKCKEGPGPGPGTPRRGGQSSRGGRGGRGRGRGG 299


>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
          Length = 464

 Score = 33.9 bits (76), Expect = 0.066
 Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 49  PNPPSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGS 108
           P PP LPP  P + PP  ++    S  H   PAP +    P       G  P   G    
Sbjct: 275 PGPPQLPPPAPGVHPPAPVVHPPASGVH--PPAPGVHPPAPGVHPPAPGVHPPTSGVHPP 332

Query: 109 ACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA-LHPRSPSTH 165
           A   P      PG  V  PA      A   H      PA  +  P  A +HP++P  H
Sbjct: 333 A---PGVHPPAPG--VHPPAPGVHPPAPGVH-----PPAPGVHPPPSAGVHPQAPGVH 380



 Score = 28.9 bits (63), Expect = 2.1
 Identities = 38/121 (31%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 49  PNPPSLPPSLPTL-IPPPFLLWG---RFSHSHSQTPAPRIWAQGPRSRDAGRGPAPKGRG 104
           P PPSLP   P +  PPP L+ G   R     S  P P      P       GPAP G  
Sbjct: 218 PAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPP--GGLPLPPMPPTGPAPSGPP 275

Query: 105 GRGSACCLPWGRSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPST 164
           G      LP      P   V  PA      A   H      PA  +  P   +HP +P  
Sbjct: 276 GPPQ---LP-----PPAPGVHPPAPVVHPPASGVH-----PPAPGVHPPAPGVHPPAPGV 322

Query: 165 H 165
           H
Sbjct: 323 H 323



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 43/162 (26%), Positives = 51/162 (31%), Gaps = 27/162 (16%)

Query: 10  PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSPILPNPPSLPPSLPTLIP-PPFLL 68
           P P   P  P       PGV+    R  P   +   P  P P SLPP  P  +P PP   
Sbjct: 218 PAPPSLPAGP-------PGVK----RPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPP 266

Query: 69  WGRFSHS-----HSQTPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTP 123
            G              PAP +    P       G  P   G    A   P      PG  
Sbjct: 267 TGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPA---PGVHPPAPG-- 321

Query: 124 VRVPAAAAREWAKREHACISKKPARSLDFPVFALHPRSPSTH 165
           V  P +     A   H      PA  +  P   +HP +P  H
Sbjct: 322 VHPPTSGVHPPAPGVH-----PPAPGVHPPAPGVHPPAPGVH 358



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 10  PLPLDYPKQPEVGEETVPGVRVSLVRTMPSRCHCHSP----------ILPNPPSLPPSLP 59
           P P  +P          PGV  +     P     H P          + P PP + PS P
Sbjct: 360 PAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAP 419

Query: 60  TLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPAP 100
            + P P  +       H  TP P +      S   G  P P
Sbjct: 420 GVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPP 460


>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
           sapiens]
          Length = 307

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 44  HSPILPNP----PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPA 99
           H P  P P    P LPP+ P   PP  L     S    Q    R  A+    R     P 
Sbjct: 39  HPPSSPPPLHITPVLPPTFPGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLR-----PP 93

Query: 100 PKGRGGRGSACCLPWG--RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA 156
            + RGG    C  P G   S  PG    +P+AAA   A++   C      RS++ P  A
Sbjct: 94  WEVRGGARGPCSAPVGSRASSGPG----LPSAAAARPARKTLTC----QPRSIESPATA 144



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 18/52 (34%), Positives = 21/52 (40%)

Query: 79  TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA 130
           TP PR      R R  G G    GRGGR +A  +    +       R  AAA
Sbjct: 241 TPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAASSSAAARGAAAA 292


>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
           sapiens]
          Length = 325

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 44  HSPILPNP----PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPA 99
           H P  P P    P LPP+ P   PP  L     S    Q    R  A+    R     P 
Sbjct: 57  HPPSSPPPLHITPVLPPTFPGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLR-----PP 111

Query: 100 PKGRGGRGSACCLPWG--RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA 156
            + RGG    C  P G   S  PG    +P+AAA   A++   C      RS++ P  A
Sbjct: 112 WEVRGGARGPCSAPVGSRASSGPG----LPSAAAARPARKTLTC----QPRSIESPATA 162



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 18/52 (34%), Positives = 21/52 (40%)

Query: 79  TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA 130
           TP PR      R R  G G    GRGGR +A  +    +       R  AAA
Sbjct: 259 TPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAASSSAAARGAAAA 310


>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
           sapiens]
          Length = 325

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 44  HSPILPNP----PSLPPSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRDAGRGPA 99
           H P  P P    P LPP+ P   PP  L     S    Q    R  A+    R     P 
Sbjct: 57  HPPSSPPPLHITPVLPPTFPGTQPPRALRLAEGSGEGKQEEGRRAQARPRPLR-----PP 111

Query: 100 PKGRGGRGSACCLPWG--RSEVPGTPVRVPAAAAREWAKREHACISKKPARSLDFPVFA 156
            + RGG    C  P G   S  PG    +P+AAA   A++   C      RS++ P  A
Sbjct: 112 WEVRGGARGPCSAPVGSRASSGPG----LPSAAAARPARKTLTC----QPRSIESPATA 162



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 18/52 (34%), Positives = 21/52 (40%)

Query: 79  TPAPRIWAQGPRSRDAGRGPAPKGRGGRGSACCLPWGRSEVPGTPVRVPAAA 130
           TP PR      R R  G G    GRGGR +A  +    +       R  AAA
Sbjct: 259 TPDPRRGHHRHRRRQRGGGRGGGGRGGREAAATVHGNAAASSSAAARGAAAA 310


>gi|81174549 hypothetical protein LOC84792 [Homo sapiens]
          Length = 259

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 35/118 (29%), Positives = 44/118 (37%), Gaps = 18/118 (15%)

Query: 3   KREYSSTPLPLDYPK---QPEVGEETVPGVRVSLVRTMPSRC----HCHSPILP------ 49
           K+     P P D P    +P V   +        +R  PS      H   P+LP      
Sbjct: 31  KKRMPEGPWPADAPSWMNKPVVDGNSQSEALSLEMRKDPSGAGLWLHSGGPVLPYVRESV 90

Query: 50  --NPPSL--PPSLPTLIPPPFLLWGRFSHSHSQTPAPRIW-AQGPRSRDAGRGPAPKG 102
             NP S   P +   L P P   + R S S  +    R W   GPR+ D  RG  PKG
Sbjct: 91  RRNPASAATPSTAVGLFPAPTECFARVSCSGVEALGRRDWLGGGPRATDGHRGQCPKG 148


>gi|154146199 sal-like 3 [Homo sapiens]
          Length = 1300

 Score = 33.5 bits (75), Expect = 0.086
 Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 30  RVSLVRTMPSRCHCHSPILPNPPSLPPS-LPTLIPPPFLLWGRFSHSHSQTPAPRIWAQG 88
           +V+L++  P R        P+ P   PS LP L   P           +  PA  I   G
Sbjct: 229 QVALMQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPL---------SAGAPAAAIAGSG 279

Query: 89  PRSRDAGRGPAPKGRGGRGSACCLPWGRSE--VPGTPVRVPAAAAREWAKREHACISKKP 146
           P +  A  G  P  R   G++   P G +E   P  P   PA AA   A    +  S +P
Sbjct: 280 PAAPAAFEGAQPLSRPESGAST--PGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQP 337

Query: 147 ARSLDFPVFA 156
             +   P  A
Sbjct: 338 QSASTPPALA 347


>gi|169162422 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 25/133 (18%)

Query: 25  TVP----GVRVSLVRTMPSRCH--CHSPI-----LPNPPSLPPSLPTLIPPPFLLWGRFS 73
           TVP    G  +SL++++ SR    C  P        + P L P    L  P   L     
Sbjct: 30  TVPEYGCGESLSLLKSLCSRTFPACQRPASSTSPCAHQPMLSPLCKPLPTPAITLLHSLK 89

Query: 74  HSHSQTP--------APRIWAQGPRSRDAGRGPAPKGRGGRGSA-CCLPWGRSEVPGTPV 124
           +  S+ P        AP     G R R   R P P+   GRG+A  CLP G+S      V
Sbjct: 90  YQSSKYPRLAAPGSVAPSAACAGHRRRLTRRSPRPRKSRGRGAANACLP-GKSSHQERGV 148

Query: 125 RV----PAAAARE 133
            V    PA +AR+
Sbjct: 149 LVGCPSPALSARD 161


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 36   TMPSRCHCHSPILPNPPSLP-PSLPTLIPPPFLLWGRFSHSHSQTPAPRIWAQGPRSRD- 93
            T P     H P LP  P  P P  PT   P  +  G  S  H + P P +   G   RD 
Sbjct: 1491 TAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDS 1550

Query: 94   AGRGPAPKGRGGR 106
            AG  P P  R  R
Sbjct: 1551 AGVSPFPPKRRER 1563


>gi|4506835 small inducible cytokine A21 precursor [Homo sapiens]
          Length = 134

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 16/85 (18%)

Query: 52  PSLPPSLPTLI------------PPPFLLWGRFSHSH-SQTPAPRIWAQGPRSRDAGRGP 98
           PSL  S+P ++              P  LW +    H  +TP+P+  AQG R     RG 
Sbjct: 53  PSLGCSIPAILFLPRKRSQAELCADPKELWVQQLMQHLDKTPSPQKPAQGCRK---DRGA 109

Query: 99  APKGRGGRGSACCLPWGRSEVPGTP 123
           +  G+ G+GS  C    RS+ P  P
Sbjct: 110 SKTGKKGKGSKGCKRTERSQTPKGP 134


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,758,146
Number of Sequences: 37866
Number of extensions: 648468
Number of successful extensions: 4460
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 3869
Number of HSP's gapped (non-prelim): 782
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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