Guide to the Human Genome
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Name: PDCD6IP Sequence: fasta or formatted (873aa) NCBI GI: 241982780
Description:

programmed cell death 6 interacting protein isoform 2

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Rho and Rac
ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [868aa] programmed cell death 6 interacting protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         89           3
 C cysteine            1.3         11           1
 D aspartate           5.0         44           1
 E glutamate           6.8         59           3
 F phenylalanine       3.7         32           2
 G glycine             4.5         39           2
 H histidine           1.3         11           1
 I isoleucine          4.0         35           2
 K lysine              7.2         63           2
 L leucine             9.5         83           2
 M methionine          1.6         14           1
 N asparagine          4.2         37           2
 P proline             8.4         73           4
 Q glutamine           7.0         61           2
 R arginine            3.9         34           2
 S serine              6.4         56           2
 T threonine           5.2         45           2
 V valine              5.7         50           2
 W tryptophan          0.2          2           1
 Y tyrosine            4.0         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   programmed cell death 6 interacting protein isoform... 
PDCD6IP               0.990   programmed cell death 6 interacting protein isoform ...
PTPN23                0.135   protein tyrosine phosphatase, non-receptor type 23 [...
LOC731884             0.124   PREDICTED: similar to programmed cell death 6 inter...
RHPN1                 0.041   rhophilin 1 
RHPN2                 0.037   rhophilin, Rho GTPase binding protein 2 
DIAPH1                0.029   diaphanous 1 isoform 2 
DIAPH1                0.029   diaphanous 1 isoform 1 
CPSF6                 0.026   cleavage and polyadenylation specific factor 6, 68 ...
WBP11                 0.025   WW domain binding protein 11 
SF3A2                 0.024   splicing factor 3a, subunit 2 
SFPQ                  0.024   splicing factor proline/glutamine rich (polypyrimidin...
RERE                  0.024   atrophin-1 like protein isoform b 
RERE                  0.024   atrophin-1 like protein isoform a 
RERE                  0.024   atrophin-1 like protein isoform a 
SF3B4                 0.024   splicing factor 3b, subunit 4 
SAMD1                 0.024   sterile alpha motif domain containing 1 
FMN2                  0.024   formin 2 
MAPK1IP1L             0.023   MAPK-interacting and spindle-stabilizing protein [Ho...
RAPH1                 0.023   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
SETD1B                0.023   SET domain containing 1B 
NACA                  0.023   nascent polypeptide-associated complex alpha subuni...
SYNJ1                 0.022   synaptojanin 1 isoform d 
PCLO                  0.022   piccolo isoform 2 
PCLO                  0.022   piccolo isoform 1 
FMN1                  0.022   formin 1 
WASL                  0.022   Wiskott-Aldrich syndrome gene-like protein 
WASF2                 0.022   WAS protein family, member 2 
BCORL1                0.022   BCL6 co-repressor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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