Guide to the Human Genome
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Name: LOC728800 Sequence: fasta or formatted (166aa) NCBI GI: 239745331
Description:

PREDICTED: similar to FLJ00402 protein

Not currently referenced in the text

Other entries for this name:
alt prot {169aa} PREDICTED: hypothetical protein
alt mRNA {166aa} PREDICTED: similar to FLJ00402 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         14           4
 C cysteine            3.0          5           2
 D aspartate           1.8          3           1
 E glutamate           4.2          7           2
 F phenylalanine       2.4          4           1
 G glycine             7.2         12           2
 H histidine           4.2          7           1
 I isoleucine          2.4          4           1
 K lysine              3.6          6           2
 L leucine             7.2         12           2
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline            17.5         29           3
 Q glutamine           1.8          3           1
 R arginine           10.2         17           1
 S serine             10.2         17           2
 T threonine           4.8          8           1
 V valine              5.4          9           1
 W tryptophan          2.4          4           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to FLJ00402 protein 
LOC728800             1.000   PREDICTED: similar to FLJ00402 protein 
LOC643355             0.057   PREDICTED: hypothetical protein 
IQSEC2                0.042   IQ motif and Sec7 domain 2 isoform1 
LOC100292124          0.039   PREDICTED: hypothetical protein XP_002346387 
LOC100292865          0.039   PREDICTED: hypothetical protein 
INVS                  0.039   inversin isoform a 
INVS                  0.039   inversin isoform b 
NACA                  0.039   nascent polypeptide-associated complex alpha subuni...
GRIN2D                0.036   N-methyl-D-aspartate receptor subunit 2D precursor ...
PDCD6IP               0.033   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.033   programmed cell death 6 interacting protein isoform ...
YLPM1                 0.030   YLP motif containing 1 
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: hypothetical protein LOC647024 
ATN1                  0.030   atrophin-1 
ATN1                  0.030   atrophin-1 
ITGB4                 0.027   integrin beta 4 isoform 2 precursor 
C15orf39              0.027   hypothetical protein LOC56905 
MLL4                  0.027   myeloid/lymphoid or mixed-lineage leukemia 4 
SF3A2                 0.027   splicing factor 3a, subunit 2 
LOC100292058          0.024   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.024   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.024   PREDICTED: hypothetical protein XP_002343287 
C7orf70               0.024   hypothetical protein LOC84792 
SALL3                 0.024   sal-like 3 
LOC284648             0.024   PREDICTED: hypothetical protein 
BAT2                  0.024   HLA-B associated transcript-2 
CCL21                 0.024   small inducible cytokine A21 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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