Guide to the Human Genome
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Name: LOC100292865 Sequence: fasta or formatted (322aa) NCBI GI: 239753114
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.1         52           2
 C cysteine            2.8          9           2
 D aspartate           1.2          4           1
 E glutamate           2.2          7           1
 F phenylalanine       1.9          6           1
 G glycine             9.9         32           2
 H histidine           2.2          7           1
 I isoleucine          2.2          7           1
 K lysine              3.1         10           2
 L leucine             9.3         30           1
 M methionine          0.9          3           1
 N asparagine          0.3          1           1
 P proline            12.7         41           6
 Q glutamine           5.0         16           2
 R arginine           13.7         44           2
 S serine              8.4         27           2
 T threonine           3.7         12           1
 V valine              2.8          9           1
 W tryptophan          0.6          2           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
TAF4                  0.054   TBP-associated factor 4 
LOC100130360          0.040   PREDICTED: hypothetical protein 
SCARF2                0.040   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.040   scavenger receptor class F, member 2 isoform 2 [Homo...
HCN3                  0.038   hyperpolarization activated cyclic nucleotide-gated ...
LOC100128440          0.035   PREDICTED: hypothetical protein 
LOC100128440          0.035   PREDICTED: hypothetical protein 
LOC100128440          0.035   PREDICTED: hypothetical protein 
KAT2A                 0.035   general control of amino acid synthesis 5-like 2 [H...
C17orf96              0.035   hypothetical protein LOC100170841 
ZNF469                0.035   zinc finger protein 469 
INF2                  0.035   inverted formin 2 isoform 2 
INF2                  0.035   inverted formin 2 isoform 1 
FMNL1                 0.035   formin-like 1 
LOC100288243          0.033   PREDICTED: hypothetical protein 
LOC100288243          0.033   PREDICTED: hypothetical protein XP_002342233 
LOC339742             0.033   PREDICTED: hypothetical protein 
NKX6-1                0.033   NK6 transcription factor related, locus 1 
WAS                   0.032   Wiskott-Aldrich syndrome protein 
LOC100133885          0.032   PREDICTED: hypothetical protein 
DNM2                  0.032   dynamin 2 isoform 4 
DNM2                  0.032   dynamin 2 isoform 2 
DNM2                  0.032   dynamin 2 isoform 1 
DNM2                  0.032   dynamin 2 isoform 3 
HCN2                  0.032   hyperpolarization activated cyclic nucleotide-gated...
LOC100134240          0.032   PREDICTED: hypothetical protein 
RGL3                  0.032   ral guanine nucleotide dissociation stimulator-like...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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