Guide to the Human Genome
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Name: LOC284648 Sequence: fasta or formatted (249aa) NCBI GI: 169162422
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {258aa} PREDICTED: hypothetical protein
alt prot {258aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         26           4
 C cysteine            5.6         14           2
 D aspartate           1.6          4           1
 E glutamate           4.8         12           1
 F phenylalanine       2.8          7           2
 G glycine             9.2         23           2
 H histidine           1.6          4           1
 I isoleucine          2.4          6           1
 K lysine              5.2         13           1
 L leucine            11.6         29           2
 M methionine          0.8          2           1
 N asparagine          1.2          3           1
 P proline             8.0         20           1
 Q glutamine           4.0         10           1
 R arginine            8.0         20           3
 S serine             12.0         30           2
 T threonine           4.0         10           1
 V valine              4.8         12           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC284648             0.797   PREDICTED: hypothetical protein 
LOC284648             0.797   PREDICTED: hypothetical protein 
LOC100127891          0.029   PREDICTED: hypothetical protein 
C10orf140             0.025   hypothetical protein LOC387640 
FOXD4L2               0.025   forkhead box D4-like 2 
FOXD4L5               0.025   forkhead box D4-like 5 
FOXD4L4               0.025   forkhead box D4-like 4 
C13orf23              0.023   hypothetical protein LOC80209 isoform 2 
C13orf23              0.023   hypothetical protein LOC80209 isoform 1 
NOS3                  0.021   nitric oxide synthase 3 isoform 4 
NOS3                  0.021   nitric oxide synthase 3 isoform 3 
NOS3                  0.021   nitric oxide synthase 3 isoform 2 
NOS3                  0.021   nitric oxide synthase 3 isoform 1 
PAWR                  0.019   PRKC, apoptosis, WT1, regulator 
AGRN                  0.017   agrin 
MDC1                  0.017   mediator of DNA-damage checkpoint 1 
LOC728800             0.017   PREDICTED: similar to FLJ00402 protein 
LOC643355             0.017   PREDICTED: hypothetical protein 
LOC728800             0.017   PREDICTED: similar to FLJ00402 protein 
LOC643355             0.017   PREDICTED: hypothetical protein 
PRR12                 0.017   proline rich 12 
PKD2                  0.015   polycystin 2 
LOC100133885          0.015   PREDICTED: hypothetical protein 
FIGN                  0.015   fidgetin 
KRTAP4-6              0.013   PREDICTED: keratin associated protein 4.6 
RGL2                  0.013   ral guanine nucleotide dissociation stimulator-like 2...
ZNF787                0.013   zinc finger protein 787 
WDR81                 0.013   PREDICTED: WD repeat domain 81 
KRTAP10-12            0.013   keratin associated protein 10-12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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