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Search of human proteins with 239750706
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750706 PREDICTED: hypothetical protein XP_002347489 [Homo
sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750706 PREDICTED: hypothetical protein XP_002347489 [Homo ... 282 6e-77
gi|169209134 PREDICTED: hypothetical protein [Homo sapiens] 34 0.039
gi|188536004 zinc finger protein 469 [Homo sapiens] 32 0.19
gi|99028883 tubulin tyrosine ligase-like family, member 2 [Homo ... 30 0.43
gi|110347463 human immunodeficiency virus type I enhancer bindin... 30 0.74
gi|24432056 hypothetical protein LOC144717 [Homo sapiens] 30 0.74
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens] 29 0.97
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ... 29 0.97
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ... 29 0.97
gi|56549117 dynamin 1 isoform 2 [Homo sapiens] 29 0.97
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 29 0.97
gi|149274646 hypothetical protein LOC57710 [Homo sapiens] 28 2.2
gi|124378039 SEC16 homolog A [Homo sapiens] 28 2.8
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 27 3.7
gi|110347429 mediator complex subunit 12 [Homo sapiens] 27 3.7
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 27 3.7
gi|122937249 glutamate receptor interacting protein 2 [Homo sapi... 27 3.7
gi|151301137 AT-hook transcription factor [Homo sapiens] 27 4.8
gi|145309320 forkhead box Q1 [Homo sapiens] 27 6.3
gi|239753710 PREDICTED: hypothetical protein [Homo sapiens] 27 6.3
gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo ... 27 6.3
gi|239748266 PREDICTED: hypothetical protein [Homo sapiens] 27 6.3
gi|239742167 PREDICTED: hypothetical protein [Homo sapiens] 27 6.3
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 27 6.3
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 26 8.2
gi|150378478 PR domain containing 8 [Homo sapiens] 26 8.2
gi|150378439 PR domain containing 8 [Homo sapiens] 26 8.2
gi|62241036 hypothetical protein LOC541565 [Homo sapiens] 26 8.2
>gi|239750706 PREDICTED: hypothetical protein XP_002347489 [Homo
sapiens]
Length = 133
Score = 282 bits (721), Expect = 6e-77
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MIPSLRIIQYWRSNYPGLRLAQWQLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQE 60
MIPSLRIIQYWRSNYPGLRLAQWQLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQE
Sbjct: 1 MIPSLRIIQYWRSNYPGLRLAQWQLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQE 60
Query: 61 QDAHVGPRLEEAWIQIPPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGR 120
QDAHVGPRLEEAWIQIPPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGR
Sbjct: 61 QDAHVGPRLEEAWIQIPPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGR 120
Query: 121 EGPTWAPHRSEFL 133
EGPTWAPHRSEFL
Sbjct: 121 EGPTWAPHRSEFL 133
>gi|169209134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 33.9 bits (76), Expect = 0.039
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 47 QAGGAGQDQTQGQEQDAHVGPRLEEAWIQIPPV----PSTRR---ARKAISHLRKPGAVL 99
Q GG + + D V P E PP PS RR A +A +H + L
Sbjct: 8 QGGGVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPSNRRGLAALRAPTHKSQNFPQL 67
Query: 100 SPLTCELQEKLPGKPKFRAGREGPTW 125
L+C L +LPG P+ GP+W
Sbjct: 68 RQLSCALTVRLPGLPR------GPSW 87
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 31.6 bits (70), Expect = 0.19
Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 36 AVPTHTCQVQ--GQAGG-----AGQDQTQGQE-----QDAHVGPRLEEAWIQIPPVPSTR 83
A P+H Q G+AGG AG+ +G E + PR EAW+ PVPS
Sbjct: 1797 ASPSHAAQGHSAGRAGGHLHPTAGRPGFEGNEFAPAGASSLTAPRGREAWLV--PVPSPA 1854
Query: 84 RARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAG 119
R LSP +LQ PG K + G
Sbjct: 1855 CVSNTHPSRRSQDPALSPPIRQLQLPGPGVAKSKDG 1890
>gi|99028883 tubulin tyrosine ligase-like family, member 2 [Homo
sapiens]
Length = 592
Score = 30.4 bits (67), Expect = 0.43
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 59 QEQDAHVGPRLEEAWIQIPP---VPSTRRARKAISHL----RKPGAVLSPLTCELQEKLP 111
++ A +G RL+EA + IPP P+ +K HL GA+L PL + E P
Sbjct: 37 EQPPAGLGARLQEAGVSIPPRRGRPTPTLEKKKKPHLMAEDEPSGALLKPLVFRVDETTP 96
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 29.6 bits (65), Expect = 0.74
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 24 QLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQDAHVGPRL-EEAWIQIPPVPST 82
+ CDS+ +P++ ++GG Q Q+Q H PRL + IQ+P + T
Sbjct: 835 ETCDSEISEAPVSPEWAPPGDGAESGGKPSPSQQVQQQSYHTQPRLVRQHNIQVPEIRVT 894
Query: 83 RRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGREGPTWAPHRSEFL 133
K E Q K P KP E W P RSE L
Sbjct: 895 EEPDKPEKEK------------EAQSKEPEKPV-----EEFQW-PQRSETL 927
>gi|24432056 hypothetical protein LOC144717 [Homo sapiens]
Length = 249
Score = 29.6 bits (65), Expect = 0.74
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 43 QVQGQAGGAGQDQTQGQEQDAHVGPRLEEAWIQIPPVPSTRRARKAISHLRKPGAVLSPL 102
Q+ GG G Q Q Q + P L A +P +PS A+ R+P A L P
Sbjct: 126 QLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSA-LPPK 184
Query: 103 T--CELQEKLPGKPKFRAGREGPTWAPHR 129
C + + FR G E P P R
Sbjct: 185 ENGCAVWST---EATFRPGPEPPPPPPRR 210
>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 29.3 bits (64), Expect = 0.97
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 15 YPGLR--------LAQW--QLCD--SQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQD 62
+PGLR L+ W +LC+ S + SS VP C AGG + G+++
Sbjct: 39 HPGLRGKVSAGPQLSAWGRELCEWCSPSPSSASYVPEDLCAGAWGAGGGDKHSHFGKQER 98
Query: 63 AHVGPRLEEAWIQIPPVPSTRRARKA 88
H + W P + R R+A
Sbjct: 99 PHAREKGGRGWGWSTPTANPRLCREA 124
>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
sapiens]
Length = 329
Score = 29.3 bits (64), Expect = 0.97
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 15 YPGLR--------LAQW--QLCD--SQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQD 62
+PGLR L+ W +LC+ S + SS VP C AGG + G+++
Sbjct: 39 HPGLRGKVSAGPQLSAWGRELCEWCSPSPSSASYVPEDLCAGAWGAGGGDKHSHFGKQER 98
Query: 63 AHVGPRLEEAWIQIPPVPSTRRARKA 88
H + W P + R R+A
Sbjct: 99 PHAREKGGRGWGWSTPTANPRLCREA 124
>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
sapiens]
Length = 329
Score = 29.3 bits (64), Expect = 0.97
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 15 YPGLR--------LAQW--QLCD--SQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQD 62
+PGLR L+ W +LC+ S + SS VP C AGG + G+++
Sbjct: 39 HPGLRGKVSAGPQLSAWGRELCEWCSPSPSSASYVPEDLCAGAWGAGGGDKHSHFGKQER 98
Query: 63 AHVGPRLEEAWIQIPPVPSTRRARKA 88
H + W P + R R+A
Sbjct: 99 PHAREKGGRGWGWSTPTANPRLCREA 124
>gi|56549117 dynamin 1 isoform 2 [Homo sapiens]
Length = 851
Score = 29.3 bits (64), Expect = 0.97
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 67 PRLEEAWIQIPPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGREGPTWA 126
P ++++W+Q+ VP+ RR+ P + +P Q + P P R G GP
Sbjct: 756 PPVDDSWLQVQSVPAGRRS---------PTSSPTP-----QRRAPAVPPARPGSRGPAPG 801
Query: 127 P 127
P
Sbjct: 802 P 802
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 29.3 bits (64), Expect = 0.97
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 14/61 (22%)
Query: 67 PRLEEAWIQIPPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGREGPTWA 126
P ++++W+Q+ VP+ RR+ P + +P Q + P P R G GP
Sbjct: 756 PPVDDSWLQVQSVPAGRRS---------PTSSPTP-----QRRAPAVPPARPGSRGPAPG 801
Query: 127 P 127
P
Sbjct: 802 P 802
>gi|149274646 hypothetical protein LOC57710 [Homo sapiens]
Length = 1190
Score = 28.1 bits (61), Expect = 2.2
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 67 PRLEEAWIQIPPVPSTR-RARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGREGPTW 125
PR+ +Q P V ++ RA K + K G +SP + + P KP+ R G+ G
Sbjct: 70 PRVWGVQLQGPSVLESKVRALKEKMTVAKQG--VSPCSASQEWSSPKKPQCRRGKAGRAG 127
Query: 126 APHRSEFL 133
P FL
Sbjct: 128 TPSEGSFL 135
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 27.7 bits (60), Expect = 2.8
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 16 PGLRLAQWQLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQDAHVGPR---LEEA 72
PGL AQ +L Q +SP +P + + QGQ Q++ P L +A
Sbjct: 1052 PGLERAQQELVPPQQQASPPQLPK---AMFSELSNPESLPAQGQAQNSAQSPASLVLVDA 1108
Query: 73 WIQIPPVPSTRRARKAISHLRKPGAVLS--PLTCELQEKLPGKP 114
Q+PP P + +S AV S P + PG P
Sbjct: 1109 GQQLPPRPPQSSSVSLVSSGSGQAAVPSEQPWPQPVPALAPGPP 1152
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 27.3 bits (59), Expect = 3.7
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 43 QVQGQAGGAGQDQTQGQEQDAHVGPRLEEAWIQIPPVPST----RRARKA----ISHLRK 94
Q G A + + Q E P E + PP+PST RR +A + H R
Sbjct: 128 QAAGPAPAGKEHRKQDAETPPPPDPPAPETLLAPPPLPSTPDPPRRELRAPSPPVEHPRL 187
Query: 95 PGAVLSPLTC--ELQEKLPGK------PKFRAGREGPTWAP 127
+V +PL ++ E++ G FR GR G P
Sbjct: 188 LRSVPTPLVMAQKISERMAGNEALSPTSPFREGRPGEWRTP 228
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 27.3 bits (59), Expect = 3.7
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 22 QWQLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQDAHVGPRLEEAWIQIPPVPS 81
Q Q Q A P Q Q Q G QTQ Q+Q A + +L++ P PS
Sbjct: 2111 QQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPS 2170
Query: 82 T 82
T
Sbjct: 2171 T 2171
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 27.3 bits (59), Expect = 3.7
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 46 GQAGGAGQDQTQGQEQDAHVGPRLEEAWIQIPPVPSTRRARKAISHLRKPGAVLSPLTCE 105
G+ G G D +G D GP+ + + +P +P + R H+ +PG E
Sbjct: 527 GKMGRPGADGARGLPGDT--GPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGP--PGEDGE 582
Query: 106 LQEKLPGKPKFRAGREGP 123
+ P P +AG GP
Sbjct: 583 RGAEGPPGPTGQAGEPGP 600
>gi|122937249 glutamate receptor interacting protein 2 [Homo
sapiens]
Length = 1141
Score = 27.3 bits (59), Expect = 3.7
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 3 PSLRIIQYWRSNYPGLRLAQWQLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQD 62
P ++++ RS +L +W C HS P H C++ A AGQDQ++
Sbjct: 437 PQRQVVKVQRSE----QLHRWDPCVPSCHSPR---PGH-CRMPTWATPAGQDQSRSLSST 488
Query: 63 AHVGPRLEEAW 73
P L A+
Sbjct: 489 PFSSPTLNHAF 499
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 26.9 bits (58), Expect = 4.8
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 66 GPRLEEAWIQIPPV-------------PSTRRARKAISHLRKPGAVLSPLTCELQEKLPG 112
GP LEE W+ P P T+ +SH+ G + P +
Sbjct: 909 GPHLEETWMASPETDSGFVGSETSRVSPLTQTPEHRLSHISTAGTLAQPFAASVPRDGAS 968
Query: 113 KPKFR 117
PK R
Sbjct: 969 YPKAR 973
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 26.6 bits (57), Expect = 6.3
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 42 CQVQGQAGGAGQDQTQGQ-EQDAHVGPRLEEA 72
C A G G TQG EQ A GP EEA
Sbjct: 46 CAANSPAAGGGARDTQGDGEQSAGGGPGAEEA 77
>gi|239753710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 77 PPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGREGPTWAPHRSE 131
PP S+ RA S LRKP + C + + P G TWA +E
Sbjct: 189 PPERSSARANSTTSRLRKPEEPGALEWCRMSARAPA---------GTTWAGSEAE 234
>gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo
sapiens]
Length = 243
Score = 26.6 bits (57), Expect = 6.3
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 3 PSLRIIQYWRSNYPGLRLAQ-WQLCDSQAHSSPLAVPTHTCQVQGQAGGAGQDQ--TQGQ 59
P+ R + W S+ P A + DS V H+ QGQ G G+D+ T
Sbjct: 109 PAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALGEDEDRTGNH 168
Query: 60 EQDAHVG--PRLEE 71
E VG P ++E
Sbjct: 169 EAGVEVGLWPNVDE 182
>gi|239748266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 77 PPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGREGPTWAPHRSE 131
PP S+ RA S LRKP + C + + P G TWA +E
Sbjct: 189 PPERSSARANSTTSRLRKPEEPGALEWCRMSARAPA---------GTTWAGSEAE 234
>gi|239742167 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 77 PPVPSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKPKFRAGREGPTWAPHRSE 131
PP S+ RA S LRKP + C + + P G TWA +E
Sbjct: 189 PPERSSARANSTTSRLRKPEEPGALEWCRMSARAPA---------GTTWAGSEAE 234
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 26.6 bits (57), Expect = 6.3
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 61 QDAHVGPRLEEAWIQIPPVPSTRRARKAISHLRK--PGAVLSPLTCEL------------ 106
Q H+ P+LE + + P P T + K I H+ G V++P+ L
Sbjct: 357 QGMHMPPQLETPRMMMTPPPVTPQQPKNI-HINPHFKGTVVTPVQVPLLPVPSQPRPAVG 415
Query: 107 QEKLPGKPKFRAGREGP 123
++ PG P+F GP
Sbjct: 416 PQRFPGPPEFPQHTPGP 432
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 26.2 bits (56), Expect = 8.2
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 43 QVQGQAGGAGQDQTQGQEQDAHVGPR 68
Q QGQ G GQ Q QGQ Q G R
Sbjct: 182 QGQGQGQGQGQGQGQGQGQGQGQGRR 207
>gi|150378478 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 46 GQAGGAGQDQTQGQEQDAHVGP 67
G GG G+DQ Q Q+Q+A +GP
Sbjct: 203 GGGGGGGKDQQQ-QQQEAPLGP 223
>gi|150378439 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 46 GQAGGAGQDQTQGQEQDAHVGP 67
G GG G+DQ Q Q+Q+A +GP
Sbjct: 203 GGGGGGGKDQQQ-QQQEAPLGP 223
>gi|62241036 hypothetical protein LOC541565 [Homo sapiens]
Length = 365
Score = 26.2 bits (56), Expect = 8.2
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 22/128 (17%)
Query: 27 DSQAHSSPLAVPTHTCQVQGQAGGAGQDQTQGQEQDAHVGPRLEEAWIQIP-----PV-- 79
+ ++ +PL P HT +GQ QT+ A P++E P PV
Sbjct: 223 EEESTRAPLPSPLHTPGNRGQGPWELLSQTEHTGAKAASPPKVEVPSANPPRLPETPVEP 282
Query: 80 ----PSTRRARKAISHLRKPGAVLSPLTCELQEKLPGKP----------KFRAGREGPTW 125
PS++ ++ ISH K +L+ + C P P + R E P
Sbjct: 283 TYHLPSSQGHKRDISHWDKVKVLLNRI-CRRSHHHPEPPAPPDGSDPRIESRDLPERPQC 341
Query: 126 APHRSEFL 133
PHR F+
Sbjct: 342 RPHRKTFM 349
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,827,435
Number of Sequences: 37866
Number of extensions: 333434
Number of successful extensions: 981
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 40
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.