Guide to the Human Genome
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Name: LOC100291755 Sequence: fasta or formatted (243aa) NCBI GI: 239752979
Description:

PREDICTED: hypothetical protein XP_002345320

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         10           2
 C cysteine            2.1          5           1
 D aspartate           7.4         18           2
 E glutamate           7.4         18           1
 F phenylalanine       2.1          5           1
 G glycine            11.9         29           2
 H histidine           7.0         17           1
 I isoleucine          1.2          3           1
 K lysine              1.2          3           1
 L leucine             7.0         17           1
 M methionine          1.6          4           1
 N asparagine          2.1          5           1
 P proline             7.8         19           2
 Q glutamine           5.3         13           2
 R arginine            6.6         16           1
 S serine             11.5         28           3
 T threonine           5.8         14           1
 V valine              6.6         16           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345320 
LOC100290314          0.532   PREDICTED: hypothetical protein XP_002347649 
LOC100289552          0.532   PREDICTED: hypothetical protein XP_002342199 
LOC100131909          0.139   PREDICTED: hypothetical protein 
LOC100131909          0.139   PREDICTED: hypothetical protein 
LOC100131909          0.139   PREDICTED: hypothetical protein 
HRC                   0.039   histidine rich calcium binding protein precursor [Hom...
LOC100292515          0.020   PREDICTED: hypothetical protein 
LOC100293596          0.020   PREDICTED: similar to mucin 
LOC100289910          0.020   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          0.020   PREDICTED: hypothetical protein XP_002343075 
C1orf183              0.020   hypothetical protein LOC55924 isoform 2 
C1orf183              0.020   hypothetical protein LOC55924 isoform 1 
C15orf2               0.020   hypothetical protein LOC23742 
NOTCH1                0.020   notch1 preproprotein 
CHGB                  0.020   chromogranin B precursor 
KIAA1310              0.018   hypothetical protein LOC55683 isoform a 
KIAA1310              0.018   hypothetical protein LOC55683 isoform b 
LOC645602             0.018   PREDICTED: hypothetical protein 
LOC645602             0.018   PREDICTED: hypothetical protein 
LOC645602             0.018   PREDICTED: hypothetical protein 
LOC728650             0.018   PREDICTED: hypothetical protein 
RPGR                  0.016   retinitis pigmentosa GTPase regulator isoform C [Hom...
HECW2                 0.016   HECT, C2 and WW domain containing E3 ubiquitin prote...
MUC6                  0.014   mucin 6, gastric 
TNIP1                 0.014   TNFAIP3 interacting protein 1 
HRG                   0.014   histidine-rich glycoprotein precursor 
GRID2IP               0.012   glutamate receptor, ionotropic, delta 2 (Grid2) int...
LOC100287311          0.010   PREDICTED: hypothetical protein XP_002343729 
LSP1                  0.010   lymphocyte-specific protein 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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