Guide to the Human Genome
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Name: LOC728163 Sequence: fasta or formatted (107aa) NCBI GI: 169209134
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         11           2
 C cysteine            0.9          1           1
 D aspartate           2.8          3           1
 E glutamate           2.8          3           1
 F phenylalanine       0.9          1           1
 G glycine            13.1         14           3
 H histidine           0.9          1           1
 I isoleucine          0.9          1           1
 K lysine              2.8          3           1
 L leucine             6.5          7           1
 M methionine          0.9          1           1
 N asparagine          2.8          3           1
 P proline            21.5         23           3
 Q glutamine           4.7          5           1
 R arginine           11.2         12           2
 S serine              8.4          9           2
 T threonine           3.7          4           1
 V valine              3.7          4           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
HCN2                  0.137   hyperpolarization activated cyclic nucleotide-gated...
EMID2                 0.113   EMI domain containing 2 
WIPF1                 0.088   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.088   WAS/WASL interacting protein family, member 1 
MXRA7                 0.083   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.083   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.083   transmembrane anchor protein 1 isoform 1 
RXRB                  0.083   retinoid X receptor, beta 
LOC100127891          0.083   PREDICTED: similar to hCG2042508 
LOC100127891          0.083   PREDICTED: similar to hCG2042508 
LOC100127891          0.083   PREDICTED: similar to hCG2042508 
SYNJ1                 0.078   synaptojanin 1 isoform c 
LOC100129852          0.078   PREDICTED: hypothetical protein 
LOC100129852          0.078   PREDICTED: hypothetical protein 
LOC100129852          0.078   PREDICTED: hypothetical protein 
MLL4                  0.078   myeloid/lymphoid or mixed-lineage leukemia 4 
ZIC5                  0.078   zinc finger protein of the cerebellum 5 
HOXA3                 0.078   homeobox A3 isoform a 
HOXA3                 0.078   homeobox A3 isoform a 
C9orf75               0.074   hypothetical protein LOC286262 isoform 2 
C9orf75               0.074   hypothetical protein LOC286262 isoform 1 
MAPK1IP1L             0.074   MAPK-interacting and spindle-stabilizing protein [Ho...
PDE4D                 0.074   phosphodiesterase 4D isoform 1 
PRB2                  0.074   proline-rich protein BstNI subfamily 2 
FAM71E2               0.069   hypothetical protein LOC284418 
TAF4                  0.069   TBP-associated factor 4 
LOC100127891          0.069   PREDICTED: hypothetical protein 
COL18A1               0.069   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.069   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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