Guide to the Human Genome
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Name: LOC100288369 Sequence: fasta or formatted (329aa) NCBI GI: 239745844
Description:

PREDICTED: hypothetical protein XP_002343563

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         38           2
 C cysteine            3.0         10           1
 D aspartate           1.8          6           1
 E glutamate           5.2         17           2
 F phenylalanine       1.8          6           1
 G glycine            16.7         55           3
 H histidine           1.8          6           1
 I isoleucine          0.3          1           1
 K lysine              3.3         11           1
 L leucine             7.3         24           1
 M methionine          0.9          3           1
 N asparagine          1.2          4           1
 P proline            11.2         37           2
 Q glutamine           4.6         15           2
 R arginine            6.7         22           1
 S serine              9.7         32           3
 T threonine           3.3         11           1
 V valine              4.3         14           1
 W tryptophan          4.6         15           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343563 
LOC100293337          1.000   PREDICTED: hypothetical protein 
LOC100290919          1.000   PREDICTED: hypothetical protein XP_002347810 
LOC728046             0.029   PREDICTED: hypothetical protein 
WTIP                  0.028   Wilms tumor 1 interacting protein 
LOC100292088          0.028   PREDICTED: hypothetical protein XP_002346321 
LOC100130465          0.025   PREDICTED: hypothetical protein 
LOC100130465          0.025   PREDICTED: hypothetical protein 
LOC100130465          0.025   PREDICTED: hypothetical protein 
FLJ31945              0.025   PREDICTED: hypothetical protein 
SMAD6                 0.022   SMAD family member 6 isoform 1 
LOC100292378          0.022   PREDICTED: hypothetical protein 
LOC388079             0.022   PREDICTED: similar to hCG2042704 
NOTCH3                0.020   Notch homolog 3 
COL8A2                0.020   collagen, type VIII, alpha 2 
LOC100293055          0.019   PREDICTED: similar to COL22A1 protein 
LOC399829             0.019   PREDICTED: FLJ43861 protein 
SAPS2                 0.019   SAPS domain family, member 2 
LMTK3                 0.019   lemur tyrosine kinase 3 
ZNF219                0.019   zinc finger protein 219 
ZNF219                0.019   zinc finger protein 219 
ZNF219                0.019   zinc finger protein 219 
WNK1                  0.018   WNK lysine deficient protein kinase 1 
HCN2                  0.018   hyperpolarization activated cyclic nucleotide-gated...
LOC100289316          0.018   PREDICTED: hypothetical protein 
LOC100289316          0.018   PREDICTED: hypothetical protein XP_002343619 
FLJ31945              0.018   PREDICTED: hypothetical protein 
FLJ31945              0.018   PREDICTED: hypothetical protein 
MAPK7                 0.018   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.018   mitogen-activated protein kinase 7 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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