PRDM8 5029

Name: PRDM8	Sequence: fasta or formatted (689aa)		NCBI GI: 150378439
Description: PR domain containing 8		Referenced in: Kruppel-related Zinc Finger Proteins
Other entries for this name: alt mRNA [689aa] PR domain containing 8
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.8 81 12 C cysteine 2.5 17 1 D aspartate 3.6 25 1 E glutamate 6.1 42 2 F phenylalanine 3.5 24 1 G glycine 13.4 92 7 H histidine 2.5 17 2 I isoleucine 1.9 13 1 K lysine 4.8 33 2 L leucine 8.9 61 4 M methionine 1.0 7 1 N asparagine 2.2 15 1 P proline 7.5 52 2 Q glutamine 4.6 32 6 R arginine 5.4 37 3 S serine 10.4 72 2 T threonine 3.9 27 2 V valine 3.2 22 1 W tryptophan 0.7 5 1 Y tyrosine 2.2 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PR domain containing 8 PRDM8 1.000 PR domain containing 8 ZNF488 0.086 zinc finger protein 488 PRDM13 0.038 PR domain containing 13 NUP214 0.027 nucleoporin 214kDa ARID1B 0.025 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.024 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.024 AT rich interactive domain 1B (SWI1-like) isoform 3 ... PRR12 0.024 proline rich 12 SALL3 0.024 sal-like 3 C6orf174 0.023 hypothetical protein LOC387104 COL2A1 0.022 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.022 collagen, type II, alpha 1 isoform 2 precursor [Hom... MNX1 0.022 homeo box HB9 AHDC1 0.022 AT hook, DNA binding motif, containing 1 ARID1A 0.021 AT rich interactive domain 1A isoform a ARID1A 0.021 AT rich interactive domain 1A isoform b PRDM9 0.021 PR domain containing 9 AEBP2 0.021 AE binding protein 2 isoform b AEBP2 0.021 AE binding protein 2 isoform a SOX1 0.020 SRY (sex determining region Y)-box 1 PRDM7 0.020 PR domain containing 7 isoform 1 SNIP 0.020 SNAP25-interacting protein ZNF503 0.020 zinc finger protein 503 PRDM14 0.020 PR domain containing 14 KLF16 0.019 BTE-binding protein 4 KLF14 0.019 Kruppel-like factor 14 COL1A2 0.019 alpha 2 type I collagen LBXCOR1 0.019 LBXCOR1 homolog PRDM4 0.018 PR domain containing 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.