Guide to the Human Genome
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Name: PRDM8 Sequence: fasta or formatted (689aa) NCBI GI: 150378439
Description:

PR domain containing 8

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [689aa] PR domain containing 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         81          12
 C cysteine            2.5         17           1
 D aspartate           3.6         25           1
 E glutamate           6.1         42           2
 F phenylalanine       3.5         24           1
 G glycine            13.4         92           7
 H histidine           2.5         17           2
 I isoleucine          1.9         13           1
 K lysine              4.8         33           2
 L leucine             8.9         61           4
 M methionine          1.0          7           1
 N asparagine          2.2         15           1
 P proline             7.5         52           2
 Q glutamine           4.6         32           6
 R arginine            5.4         37           3
 S serine             10.4         72           2
 T threonine           3.9         27           2
 V valine              3.2         22           1
 W tryptophan          0.7          5           1
 Y tyrosine            2.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PR domain containing 8 
PRDM8                 1.000   PR domain containing 8 
ZNF488                0.086   zinc finger protein 488 
PRDM13                0.038   PR domain containing 13 
NUP214                0.027   nucleoporin 214kDa 
ARID1B                0.025   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.024   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.024   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
PRR12                 0.024   proline rich 12 
SALL3                 0.024   sal-like 3 
C6orf174              0.023   hypothetical protein LOC387104 
COL2A1                0.022   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.022   collagen, type II, alpha 1 isoform 2 precursor [Hom...
MNX1                  0.022   homeo box HB9 
AHDC1                 0.022   AT hook, DNA binding motif, containing 1 
ARID1A                0.021   AT rich interactive domain 1A isoform a 
ARID1A                0.021   AT rich interactive domain 1A isoform b 
PRDM9                 0.021   PR domain containing 9 
AEBP2                 0.021   AE binding protein 2 isoform b 
AEBP2                 0.021   AE binding protein 2 isoform a 
SOX1                  0.020   SRY (sex determining region Y)-box 1 
PRDM7                 0.020   PR domain containing 7 isoform 1 
SNIP                  0.020   SNAP25-interacting protein 
ZNF503                0.020   zinc finger protein 503 
PRDM14                0.020   PR domain containing 14 
KLF16                 0.019   BTE-binding protein 4 
KLF14                 0.019   Kruppel-like factor 14 
COL1A2                0.019   alpha 2 type I collagen 
LBXCOR1               0.019   LBXCOR1 homolog 
PRDM4                 0.018   PR domain containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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