Guide to the Human Genome
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Name: FAM109A Sequence: fasta or formatted (249aa) NCBI GI: 24432056
Description:

hypothetical protein LOC144717

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         35           2
 C cysteine            1.6          4           1
 D aspartate           2.4          6           1
 E glutamate           6.8         17           2
 F phenylalanine       4.4         11           1
 G glycine             6.8         17           4
 H histidine           1.6          4           1
 I isoleucine          1.2          3           2
 K lysine              2.0          5           2
 L leucine            10.4         26           1
 M methionine          2.0          5           1
 N asparagine          1.6          4           1
 P proline            12.9         32           6
 Q glutamine           3.6          9           2
 R arginine            9.2         23           3
 S serine              6.0         15           2
 T threonine           2.4          6           1
 V valine              6.4         16           2
 W tryptophan          1.6          4           1
 Y tyrosine            2.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC144717 
FAM109B               0.236   hypothetical protein LOC150368 
ARHGAP24              0.088   Rho GTPase activating protein 24 isoform 1 
PLEKHA6               0.084   phosphoinositol 3-phosphate-binding protein-3 
PLEKHA4               0.082   pleckstrin homology domain containing family A memb...
PLEKHA4               0.082   pleckstrin homology domain containing family A memb...
RASGRF2               0.074   Ras protein-specific guanine nucleotide-releasing fa...
ARHGAP22              0.066   Rho GTPase activating protein 2 
ARHGAP25              0.066   Rho GTPase activating protein 25 isoform a 
ARHGAP25              0.066   Rho GTPase activating protein 25 isoform b 
RASGRF1               0.064   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.064   Ras protein-specific guanine nucleotide-releasing fa...
FMN1                  0.062   formin 1 
CYTH4                 0.062   cytohesin 4 
CYTH1                 0.062   cytohesin 1 isoform 2 
CYTH2                 0.062   cytohesin 2 isoform 2 
CYTH3                 0.062   cytohesin 3 
SH3BP2                0.060   SH3-domain binding protein 2 isoform b 
SH3BP2                0.060   SH3-domain binding protein 2 isoform c 
SH3BP2                0.060   SH3-domain binding protein 2 isoform a 
SH3BP2                0.060   SH3-domain binding protein 2 isoform a 
RAPH1                 0.060   Ras association and pleckstrin homology domains 1 is...
PLEKHJ1               0.060   pleckstrin homology domain containing, family J membe...
PLEKHH2               0.057   pleckstrin homology domain containing, family H (wi...
PLEKHA5               0.055   pleckstrin homology domain containing, family A mem...
PLEKHA5               0.055   pleckstrin homology domain containing, family A memb...
FMNL1                 0.053   formin-like 1 
CYTH1                 0.051   cytohesin 1 isoform 1 
CYTH2                 0.051   cytohesin 2 isoform 1 
PLEKHH1               0.051   pleckstrin homology domain containing, family H (wit...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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