Guide to the Human Genome
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Name: LOC100128025 Sequence: fasta or formatted (254aa) NCBI GI: 239753710
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {254aa} PREDICTED: hypothetical protein
alt mRNA {254aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         33           4
 C cysteine            6.3         16           3
 D aspartate           2.8          7           1
 E glutamate           7.9         20           2
 F phenylalanine       3.1          8           2
 G glycine             9.4         24           3
 H histidine           0.8          2           1
 I isoleucine          2.0          5           1
 K lysine              5.1         13           3
 L leucine             6.3         16           2
 M methionine          3.1          8           1
 N asparagine          0.8          2           1
 P proline             9.4         24           2
 Q glutamine           0.8          2           1
 R arginine            8.3         21           2
 S serine              8.3         21           2
 T threonine           4.7         12           2
 V valine              3.9         10           1
 W tryptophan          3.1          8           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128025          1.000   PREDICTED: hypothetical protein 
LOC100128025          1.000   PREDICTED: hypothetical protein 
HOXB3                 0.019   homeobox B3 
DGKQ                  0.017   diacylglycerol kinase, theta 
FCN2                  0.015   ficolin 2 isoform a precursor 
PRAGMIN               0.015   pragmin 
FOXA1                 0.014   forkhead box A1 
ADAMTS10              0.014   ADAM metallopeptidase with thrombospondin type 1 mot...
LOC100131738          0.014   PREDICTED: hypothetical protein 
HS6ST3                0.012   PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...
HS6ST3                0.012   heparan sulfate 6-O-sulfotransferase 3 
IL6ST                 0.010   interleukin 6 signal transducer isoform 1 precursor ...
C9orf150              0.010   hypothetical protein LOC286343 
LOC100293327          0.010   PREDICTED: hypothetical protein 
LOC100131851          0.010   PREDICTED: hypothetical protein 
LOC100291252          0.010   PREDICTED: hypothetical protein XP_002347634 
LOC100130751          0.010   PREDICTED: hypothetical protein 
LOC100288243          0.010   PREDICTED: hypothetical protein 
LOC100287254          0.010   PREDICTED: hypothetical protein XP_002343484 
LOC100131851          0.010   PREDICTED: hypothetical protein 
LOC100288243          0.010   PREDICTED: hypothetical protein XP_002342233 
C2orf27B              0.010   hypothetical protein LOC408029 
C2orf27A              0.010   hypothetical protein LOC29798 
DRD4                  0.010   dopamine receptor D4 
LOC100288796          0.010   PREDICTED: hypothetical protein 
LOC100288796          0.010   PREDICTED: hypothetical protein XP_002343710 
MAST4                 0.010   microtubule associated serine/threonine kinase famil...
SLC2A4RG              0.010   SLC2A4 regulator 
CRB2                  0.010   crumbs homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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