Guide to the Human Genome
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Name: LOC100291029 Sequence: fasta or formatted (80aa) NCBI GI: 239749704
Description:

PREDICTED: hypothetical protein XP_002347124

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         11           2
 C cysteine            1.2          1           1
 D aspartate           1.2          1           1
 E glutamate           3.8          3           1
 F phenylalanine       2.5          2           2
 G glycine             2.5          2           1
 H histidine           1.2          1           1
 I isoleucine          1.2          1           1
 K lysine              0.0          0           0
 L leucine            10.0          8           1
 M methionine          1.2          1           1
 N asparagine          6.2          5           1
 P proline            23.8         19           3
 Q glutamine           2.5          2           1
 R arginine           15.0         12           1
 S serine              6.2          5           1
 T threonine           6.2          5           1
 V valine              1.2          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347124 
PCDH15                0.104   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.104   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.104   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.104   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.104   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.104   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.104   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.104   protocadherin 15 isoform CD1-1 precursor 
LOC645529             0.097   PREDICTED: similar to Putative acrosin-like proteas...
ACR                   0.097   acrosin precursor 
ZFHX4                 0.090   zinc finger homeodomain 4 
SPEG                  0.090   SPEG complex locus 
PRR12                 0.090   proline rich 12 
MNT                   0.090   MAX binding protein 
WASL                  0.083   Wiskott-Aldrich syndrome gene-like protein 
BRSK1                 0.083   BR serine/threonine kinase 1 
FHOD1                 0.083   formin homology 2 domain containing 1 
SAMD1                 0.083   sterile alpha motif domain containing 1 
LOC100130360          0.083   PREDICTED: hypothetical protein 
TRRAP                 0.083   transformation/transcription domain-associated protei...
HOXD4                 0.076   homeobox D4 
LOC100130837          0.076   PREDICTED: hypothetical protein 
LOC100130837          0.076   PREDICTED: hypothetical protein 
BCORL1                0.076   BCL6 co-repressor-like 1 
CDKN1C                0.076   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.076   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.076   cyclin-dependent kinase inhibitor 1C isoform a 
LOC100292513          0.076   PREDICTED: hypothetical protein 
LOC100290082          0.076   PREDICTED: hypothetical protein XP_002347925 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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