Guide to the Human Genome
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Name: LOC100130837 Sequence: fasta or formatted (378aa) NCBI GI: 239743976
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {378aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         43           2
 C cysteine            2.1          8           1
 D aspartate           4.5         17           2
 E glutamate           1.9          7           1
 F phenylalanine       1.3          5           1
 G glycine            10.3         39           2
 H histidine           1.1          4           1
 I isoleucine          0.3          1           1
 K lysine              1.6          6           1
 L leucine             8.5         32           2
 M methionine          0.8          3           1
 N asparagine          1.3          5           1
 P proline            16.4         62           6
 Q glutamine           4.2         16           1
 R arginine           13.5         51           2
 S serine              9.3         35           3
 T threonine           5.3         20           2
 V valine              3.4         13           1
 W tryptophan          2.1          8           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130837          1.000   PREDICTED: hypothetical protein 
PRB2                  0.042   proline-rich protein BstNI subfamily 2 
LOC100292723          0.036   PREDICTED: hypothetical protein 
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 
PRB3                  0.034   proline-rich protein BstNI subfamily 3 precursor [H...
PRB1                  0.032   proline-rich protein BstNI subfamily 1 isoform 2 pre...
COL27A1               0.032   collagen, type XXVII, alpha 1 
SYN1                  0.031   synapsin I isoform Ia 
CPSF6                 0.031   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
PRB4                  0.030   proline-rich protein BstNI subfamily 4 precursor [Ho...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: hypothetical protein LOC647024 
PRB1                  0.029   proline-rich protein BstNI subfamily 1 isoform 1 pre...
WASL                  0.029   Wiskott-Aldrich syndrome gene-like protein 
SYNPO                 0.029   synaptopodin isoform A 
SYN1                  0.029   synapsin I isoform Ib 
PCLO                  0.027   piccolo isoform 2 
PCLO                  0.027   piccolo isoform 1 
ZNF828                0.027   zinc finger protein 828 
WASF2                 0.026   WAS protein family, member 2 
SYNJ1                 0.026   synaptojanin 1 isoform c 
MYO15A                0.025   myosin XV 
WAS                   0.025   Wiskott-Aldrich syndrome protein 
LOC100288963          0.025   PREDICTED: hypothetical protein XP_002342546 
PRB1                  0.025   proline-rich protein BstNI subfamily 1 isoform 3 pre...
BCL7C                 0.025   B-cell CLL/lymphoma 7C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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