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Search of human proteins with 239748820
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 548 e-156
gi|239740857 PREDICTED: similar to major histocompatibility comp... 525 e-149
gi|239740859 PREDICTED: similar to major histocompatibility comp... 509 e-145
gi|155030211 major histocompatibility complex, class II, DR beta... 505 e-143
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 498 e-141
gi|239740853 PREDICTED: similar to major histocompatibility comp... 498 e-141
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 493 e-140
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 493 e-140
gi|17986005 major histocompatibility complex, class II, DR beta ... 491 e-139
gi|18641375 major histocompatibility complex, class II, DR beta ... 487 e-138
gi|239740855 PREDICTED: similar to major histocompatibility comp... 482 e-136
gi|52630344 major histocompatibility complex, class II, DR beta ... 477 e-135
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 431 e-121
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 431 e-121
gi|239758092 PREDICTED: similar to HLA class II histocompatibili... 423 e-119
gi|239758090 PREDICTED: major histocompatibility complex, class ... 417 e-117
gi|169217452 PREDICTED: similar to HLA class II histocompatibili... 347 8e-96
gi|239758095 PREDICTED: similar to major histocompatibility comp... 345 2e-95
gi|239740749 PREDICTED: similar to major histocompatibility comp... 345 2e-95
gi|239748788 PREDICTED: similar to major histocompatibility comp... 343 9e-95
gi|239740863 PREDICTED: similar to major histocompatibility comp... 342 2e-94
gi|239513955 PREDICTED: similar to major histocompatibility comp... 342 2e-94
gi|169168591 PREDICTED: similar to major histocompatibility comp... 335 2e-92
gi|150418002 major histocompatibility complex, class II, DQ beta... 334 5e-92
gi|239740918 PREDICTED: similar to major histocompatibility comp... 333 7e-92
gi|239740920 PREDICTED: similar to major histocompatibility comp... 332 2e-91
gi|24797076 major histocompatibility complex, class II, DP beta ... 318 4e-87
gi|4504403 major histocompatibility complex, class II, DO beta p... 288 3e-78
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa... 255 2e-68
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa... 206 2e-53
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 548 bits (1412), Expect = e-156
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV
Sbjct: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
>gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 525 bits (1351), Expect = e-149
Identities = 255/266 (95%), Positives = 257/266 (96%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLE ECHFFNGTERVR L+RYF
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQ+R VD YCRHNYGV ESFTV
Sbjct: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
>gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 509 bits (1311), Expect = e-145
Identities = 251/267 (94%), Positives = 254/267 (95%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKF-ECHFFNGTERVRLLERY 59
MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTR + V ECHFFNGTERVR L+RY
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
Query: 60 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFT 119
FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQ+R VD YCRHNYGV ESFT
Sbjct: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
Query: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN
Sbjct: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
Query: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
LFLGAGLFIYFRNQKGHSGLQPRGFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
>gi|155030211 major histocompatibility complex, class II, DR beta 1
precursor [Homo sapiens]
Length = 266
Score = 505 bits (1300), Expect = e-143
Identities = 245/266 (92%), Positives = 253/266 (95%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGSCM LTVTLMVLSSPLAL+GDTRPRFL + K ECHFFNGTERVR L+RYF
Sbjct: 1 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEE+VRFDSDVGEFRAVTELGRPDAEYWNSQKD+LEQ RAAVDTYCRHNYGV ESFTV
Sbjct: 61 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRV PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWF NGQEEK G+VSTGLI NG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 498 bits (1281), Expect = e-141
Identities = 242/266 (90%), Positives = 251/266 (94%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL++ KFECHFFNGTERVR L R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGI 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEENVRFDSDVGE+RAVTELGRP AE WNSQKD LE+RRA VDT CRHNYGVGESFTV
Sbjct: 61 YNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 498 bits (1281), Expect = e-141
Identities = 241/266 (90%), Positives = 249/266 (93%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGS +A LTVTLMVLSS LA AGDTRPRFLE +K ECHFFNGTERVR LER+F
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
HNQEE RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQ+R VD YCRHNYGVGESFTV
Sbjct: 61 HNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 493 bits (1268), Expect = e-140
Identities = 239/266 (89%), Positives = 250/266 (93%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL + K++CHFFNGTERV+ LER F
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE RR VDT CRHNYGVGESFTV
Sbjct: 61 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 493 bits (1268), Expect = e-140
Identities = 239/266 (89%), Positives = 250/266 (93%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL + K++CHFFNGTERV+ LER F
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+LE RR VDT CRHNYGVGESFTV
Sbjct: 61 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 491 bits (1264), Expect = e-139
Identities = 240/266 (90%), Positives = 248/266 (93%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGS +A LTVTLMVLSS LA AGDTRPRFLE K ECHFFNGTERVR L+RYF
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
HNQEE +RFDSDVGE+RAVTELGRP AE WNSQKDLLEQ+R VD YCRHNYGVGESFTV
Sbjct: 61 HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTS LTVEWRARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|18641375 major histocompatibility complex, class II, DR beta 5
precursor [Homo sapiens]
Length = 266
Score = 487 bits (1254), Expect = e-138
Identities = 235/266 (88%), Positives = 249/266 (93%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGS MA LTVTLMVLSSPLALAGDTRPRFL++ K+ECHFFNGTERVR L R
Sbjct: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEE++RFDSDVGE+RAVTELGRPDAEYWNSQKD LE RRAAVDTYCRHNYGVGESFTV
Sbjct: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRV PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEK GVVSTGLI NG
Sbjct: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLGAGLFIYF+NQKGHSGL P G +S
Sbjct: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 482 bits (1241), Expect = e-136
Identities = 237/267 (88%), Positives = 246/267 (92%), Gaps = 1/267 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRF-LEEVKFECHFFNGTERVRLLERY 59
MVCL+LPGGS +A LTVTLMVLSS LA AGDTR + L +K ECHFFNGTERVR LER+
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
Query: 60 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFT 119
FHNQEE RFDSDVGE+RAV ELGRPDAEYWNSQKDLLEQ+R VD YCRHNYGVGESFT
Sbjct: 61 FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
Query: 120 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 179
VQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI N
Sbjct: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 239
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW ARSESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
Query: 240 LFLGAGLFIYFRNQKGHSGLQPRGFLS 266
LFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
>gi|52630344 major histocompatibility complex, class II, DR beta 4
precursor [Homo sapiens]
Length = 266
Score = 477 bits (1227), Expect = e-135
Identities = 231/266 (86%), Positives = 245/266 (92%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE+ K ECHF NGTERV L RY
Sbjct: 1 MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEE R++SD+GE++AVTELGRPDAEYWNSQKDLLE+RRA VDTYCR+NYGV ESFTV
Sbjct: 61 YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPGSIEVRWFRNGQEEK GVVSTGLI NG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+W ARSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
FLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 241 FLGTGLFIYFRNQKGHSGLQPTGLLS 266
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 431 bits (1108), Expect = e-121
Identities = 208/232 (89%), Positives = 217/232 (93%)
Query: 35 RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
RFL + K++CHFFNGTERV+ LER F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 33 RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
Query: 95 DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
D+LE RR VDT CRHNYGVGESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 93 DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 431 bits (1108), Expect = e-121
Identities = 208/232 (89%), Positives = 217/232 (93%)
Query: 35 RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
RFL + K++CHFFNGTERV+ LER F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 33 RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
Query: 95 DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
D+LE RR VDT CRHNYGVGESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 93 DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain [Homo sapiens]
Length = 253
Score = 423 bits (1087), Expect = e-119
Identities = 217/268 (80%), Positives = 230/268 (85%), Gaps = 17/268 (6%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGSCMA LTVTLMVLSSPLALAGDT+PRFL + K++CHFFNGTERV+ LER F
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEE VRFDSDVGE+RAVTELGRP AE Q DLL C + +SF +
Sbjct: 61 YNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------C-----LPDSFPL 105
Query: 121 Q--RRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIH 178
VHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEK GVVSTGLI
Sbjct: 106 PCFLLVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ 165
Query: 179 NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLG 238
NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRARSESAQSKMLSGVGGFVLG
Sbjct: 166 NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLG 225
Query: 239 LLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
LLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 226 LLFLGAGLFIYFRNQKGHSGLQPTGFLS 253
>gi|239758090 PREDICTED: major histocompatibility complex, class II,
DR beta 4 [Homo sapiens]
Length = 278
Score = 417 bits (1073), Expect = e-117
Identities = 201/232 (86%), Positives = 213/232 (91%)
Query: 35 RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
RFLE+ K ECHF NGTERV L RY +NQEE R++SD+GE++AVTELGRPDAEYWNSQK
Sbjct: 47 RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
Query: 95 DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
DLLE+RRA VDTYCR+NYGV ESFTVQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPG
Sbjct: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
Query: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266
V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-4 beta chain, partial [Homo sapiens]
Length = 223
Score = 347 bits (889), Expect = 8e-96
Identities = 162/177 (91%), Positives = 173/177 (97%)
Query: 35 RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94
RFLE+VK ECHFFNGTERVR L+RYF++QEE VRFDSDVGE+RAVTELGRPDAEYWNSQK
Sbjct: 47 RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
Query: 95 DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154
DLLEQ+RAAVDTYCRHNYGVGESFTVQRRV+P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
Query: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211
SIEVRWFRNGQEEKTGVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
>gi|239758095 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 345 bits (885), Expect = 2e-95
Identities = 170/260 (65%), Positives = 202/260 (77%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG A +T+ L +LS+P+A D+ F+ + K C+F NGTERVRL+ R +N+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRNGQEE GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKGHSGLQPRG 263
GL I+ R+QKG RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266
>gi|239740749 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 345 bits (885), Expect = 2e-95
Identities = 170/260 (65%), Positives = 202/260 (77%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG A +T+ L +LS+P+A D+ F+ + K C+F NGTERVRL+ R +N+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRNGQEE GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKGHSGLQPRG 263
GL I+ R+QKG RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266
>gi|239748788 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 2 [Homo sapiens]
Length = 281
Score = 343 bits (880), Expect = 9e-95
Identities = 169/260 (65%), Positives = 202/260 (77%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG +A +T+ L +LS+P+A D+ F+ + K C+F NGTERVRL+ R +N+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKGHSGLQPRG 263
GL I+ R+QKG RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266
>gi|239740863 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 342 bits (878), Expect = 2e-94
Identities = 169/260 (65%), Positives = 201/260 (77%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG A +T+ L +LS+P+A D+ F+ + K C+F NGTERVRL+ R +N+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKGHSGLQPRG 263
GL I+ R+QKG RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266
>gi|239513955 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 342 bits (878), Expect = 2e-94
Identities = 169/260 (65%), Positives = 201/260 (77%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG A +T+ L +LS+P+A D+ F+ + K C+F NGTERVRL+ R +N+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKGHSGLQPRG 263
GL I+ R+QKG RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266
>gi|169168591 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 1 [Homo sapiens]
Length = 261
Score = 335 bits (859), Expect = 2e-92
Identities = 163/252 (64%), Positives = 198/252 (78%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG +A +T+ L +LS+P+A D+ F+ + K C+F NGTERVR + RY +N+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVTRYIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA+VDT CRHNY + T+QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKG 255
GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|150418002 major histocompatibility complex, class II, DQ beta 1
precursor [Homo sapiens]
Length = 261
Score = 334 bits (856), Expect = 5e-92
Identities = 166/252 (65%), Positives = 195/252 (77%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PG +A +T+ L +LSS LA D+ F+ + K C+F NGTERVRL+ RY +N+
Sbjct: 7 LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG +RAVT GRPDAEYWNSQK++LE RA +DT CRHNY V +QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE GVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKG 255
GL I R+QKG
Sbjct: 247 LGLIIRQRSQKG 258
>gi|239740918 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
Length = 281
Score = 333 bits (855), Expect = 7e-92
Identities = 163/260 (62%), Positives = 199/260 (76%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG +A +T+ L +LS+P+A D+ F+ + K C+F NGTERVR + RY +N+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA +DT CRHNY + T+QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKGHSGLQPRG 263
GL I+ R+QKG RG
Sbjct: 247 LGLIIHHRSQKGEEPQGKRG 266
>gi|239740920 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
Length = 261
Score = 332 bits (851), Expect = 2e-91
Identities = 161/252 (63%), Positives = 197/252 (78%)
Query: 4 LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63
LR+PGG +A +T+ L +LS+P+A D+ F+ + K C+F NGTERVR + RY +N+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
Query: 64 EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG +RAVT LG P AEYWNSQK++LE+ RA +DT CRHNY + T+QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
V P VT+ PS+T+ L HHNLLVCSV+ FYP I+VRWFRN QEE TGVVST LI NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ +P+ VEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFRNQKG 255
GL I+ R+QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 318 bits (814), Expect = 4e-87
Identities = 156/258 (60%), Positives = 191/258 (74%), Gaps = 2/258 (0%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
M+ L++ LT LMVL + + T +L + + EC+ FNGT+R LERY
Sbjct: 1 MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQR--FLERYI 58
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+N+EE RFDSDVGEFRAVTELGRP AEYWNSQKD+LE++RA D CRHNY +G T+
Sbjct: 59 YNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTL 118
Query: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
QRRV P+V V PSK PLQHHNLLVC V+ FYPGSI+VRWF NGQEE GVVST LI NG
Sbjct: 119 QRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNG 178
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
DWTFQ LVMLE P+ G+VYTCQVEH S+ SP+TVEW+A+S+SA+SK L+G GGFVLGL+
Sbjct: 179 DWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLI 238
Query: 241 FLGAGLFIYFRNQKGHSG 258
G G+F++ R++K G
Sbjct: 239 ICGVGIFMHRRSKKVQRG 256
>gi|4504403 major histocompatibility complex, class II, DO beta
precursor [Homo sapiens]
Length = 273
Score = 288 bits (738), Expect = 3e-78
Identities = 141/252 (55%), Positives = 179/252 (71%)
Query: 12 MAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDS 71
+ L V L L S + D+ F+ + K +C+F NGTE+V+ + R+ N EE VRFDS
Sbjct: 9 VVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDS 68
Query: 72 DVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVY 131
DVG F A+T+LG+PDAE WNS+ DLLE+ R AVD CRHNY +G FTV R+V P+VTVY
Sbjct: 69 DVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVY 128
Query: 132 PSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLE 191
P +T L HNLL CSV+GFYPG I+++WF NGQEE+ GV+STG I NGDWTFQT+VMLE
Sbjct: 129 PERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLE 188
Query: 192 TVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
P G VYTC V+H S+ SP++VEWRA+SE + KMLSG+ F+LGL+FL G+ I R
Sbjct: 189 MTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLR 248
Query: 252 NQKGHSGLQPRG 263
QKG+ Q G
Sbjct: 249 AQKGYVRTQMSG 260
>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 241
Score = 255 bits (652), Expect = 2e-68
Identities = 122/140 (87%), Positives = 128/140 (91%)
Query: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183
+ PK T+YP+KT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEK VVS GLI NGDWT
Sbjct: 99 LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243
FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
Query: 244 AGLFIYFRNQKGHSGLQPRG 263
GLFIYFRNQKGHSGLQP G
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238
>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 140
Score = 206 bits (524), Expect = 2e-53
Identities = 99/123 (80%), Positives = 110/123 (89%)
Query: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
MVCL+LPGGSCMA LTVTL VLSSPLALAGDT+PRFLE+ K ECHF NGTERV L RY
Sbjct: 1 MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
Query: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
+NQEE R++SD+GE++AVTELGRPDAEYWNSQKDLLE+RRA VDTYCR+NYGV ESFTV
Sbjct: 61 YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
Query: 121 QRR 123
QRR
Sbjct: 121 QRR 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,732,172
Number of Sequences: 37866
Number of extensions: 467561
Number of successful extensions: 1118
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 172
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.