Search of human proteins with 239748788

Search of human proteins with 239748788

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748788 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 2 [Homo sapiens]
         (281 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748788 PREDICTED: similar to major histocompatibility comp...   572   e-163
gi|239740863 PREDICTED: similar to major histocompatibility comp...   569   e-163
gi|239513955 PREDICTED: similar to major histocompatibility comp...   569   e-163
gi|239758095 PREDICTED: similar to major histocompatibility comp...   566   e-162
gi|239740749 PREDICTED: similar to major histocompatibility comp...   566   e-162
gi|239740918 PREDICTED: similar to major histocompatibility comp...   532   e-151
gi|169168591 PREDICTED: similar to major histocompatibility comp...   493   e-140
gi|239740920 PREDICTED: similar to major histocompatibility comp...   488   e-138
gi|150418002 major histocompatibility complex, class II, DQ beta...   459   e-129
gi|18641375 major histocompatibility complex, class II, DR beta ...   344   6e-95
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   343   1e-94
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   341   4e-94
gi|155030211 major histocompatibility complex, class II, DR beta...   340   8e-94
gi|24797076 major histocompatibility complex, class II, DP beta ...   339   1e-93
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   338   2e-93
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   338   2e-93
gi|239740857 PREDICTED: similar to major histocompatibility comp...   337   9e-93
gi|239740859 PREDICTED: similar to major histocompatibility comp...   330   8e-91
gi|239740853 PREDICTED: similar to major histocompatibility comp...   329   2e-90
gi|52630344 major histocompatibility complex, class II, DR beta ...   328   2e-90
gi|17986005 major histocompatibility complex, class II, DR beta ...   327   9e-90
gi|239740855 PREDICTED: similar to major histocompatibility comp...   324   5e-89
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   317   7e-87
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   317   7e-87
gi|239758090 PREDICTED: major histocompatibility complex, class ...   306   1e-83
gi|4504403 major histocompatibility complex, class II, DO beta p...   301   6e-82
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   285   4e-77
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   249   2e-66
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   188   4e-48
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   128   6e-30

>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  572 bits (1474), Expect = e-163
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  569 bits (1467), Expect = e-163
 Identities = 279/281 (99%), Positives = 280/281 (99%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  569 bits (1467), Expect = e-163
 Identities = 279/281 (99%), Positives = 280/281 (99%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  567 bits (1460), Expect = e-162
 Identities = 278/281 (98%), Positives = 279/281 (99%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN QEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  567 bits (1460), Expect = e-162
 Identities = 278/281 (98%), Positives = 279/281 (99%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLR ATVTLML+MLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN QEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  532 bits (1371), Expect = e-151
 Identities = 261/281 (92%), Positives = 267/281 (95%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA +D VCRHNYQLELR
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWPVTQTLCSERSCL 281
           GLIFLGLGLIIHHRSQKGEEPQGKRGRW VTQTLCS RSCL
Sbjct: 241 GLIFLGLGLIIHHRSQKGEEPQGKRGRWAVTQTLCSGRSCL 281


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  493 bits (1270), Expect = e-140
 Identities = 243/258 (94%), Positives = 249/258 (96%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFV+QFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVT 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA+VD VCRHNYQLELR
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKG 258
           GLIFLGLGLIIHHRSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  488 bits (1256), Expect = e-138
 Identities = 240/258 (93%), Positives = 246/258 (95%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVR V+
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT LG PAAEYWNSQK++LER RA +D VCRHNYQLELR
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
           TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSGIGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKG 258
           GLIFLGLGLIIHHRSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  459 bits (1181), Expect = e-129
 Identities = 226/258 (87%), Positives = 237/258 (91%)

Query: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60
           MSWKKALRIPG LRVATVTLMLAMLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVRLV+
Sbjct: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60

Query: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120
           R IYNREE  RFDSDVG +RAVT  G P AEYWNSQK++LE  RA +D VCRHNY++  R
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120

Query: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240

Query: 241 GLIFLGLGLIIHHRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIRQRSQKG 258


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  344 bits (882), Expect = 6e-95
 Identities = 168/252 (66%), Positives = 200/252 (79%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERVR + R IYN+
Sbjct: 4   LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE +RFDSDVGE+RAVT LG P AEYWNSQKD LE +RAAVD  CRHNY +    T+QRR
Sbjct: 64  EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           VEP VT+ P+RT+ L HHNLLVCSV  FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ ++QKG
Sbjct: 244 AGLFIYFKNQKG 255


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  343 bits (880), Expect = 1e-94
 Identities = 169/260 (65%), Positives = 202/260 (77%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           LR+PGG  +A +T+ L +LS+P+A   D+   F+ + K  C+F NGTERVRL+ R  +N+
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE++RAAVD  CRHNY +    T+QRR
Sbjct: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKGEEPQGKRG 266
            GL I+ R+QKG      RG
Sbjct: 244 AGLFIYFRNQKGHSGLQPRG 263


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  341 bits (875), Expect = 4e-94
 Identities = 167/252 (66%), Positives = 200/252 (79%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERVR + R IYN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGIYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE VRFDSDVGE+RAVT LG P AE WNSQKD LER+RA VD VCRHNY +    T+QRR
Sbjct: 64  EENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  340 bits (872), Expect = 8e-94
 Identities = 166/252 (65%), Positives = 200/252 (79%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +  +T+ L +LS+P+A   D+   F++Q K  C+F NGTERVR + R  YN+
Sbjct: 4   LKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYFYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE VRFDSDVGEFRAVT LG P AEYWNSQKDILE+ RAAVD  CRHNY +    T+QRR
Sbjct: 64  EESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V+P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWF N QEE AG+VST LI+NGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  339 bits (870), Expect = 1e-93
 Identities = 166/251 (66%), Positives = 196/251 (78%), Gaps = 2/251 (0%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++    R   +T +L +L T V +GR +PE++++Q +  CY  NGT+R   + R IYNR
Sbjct: 4   LQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQR--FLERYIYNR 61

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE  RFDSDVGEFRAVT LG PAAEYWNSQKDILE KRA  DR+CRHNY+L    TLQRR
Sbjct: 62  EEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRR 121

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V+P V +SPS+   L HHNLLVC VTDFYP  I+VRWF N QEETAGVVST LIRNGDWT
Sbjct: 122 VQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWT 181

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQILVMLEMTPQ+GDVYTC VEH SL SP+TVEW+AQS+SA+SK L+G GGFVLGLI  G
Sbjct: 182 FQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICG 241

Query: 247 LGLIIHHRSQK 257
           +G+ +H RS+K
Sbjct: 242 VGIFMHRRSKK 252


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  338 bits (868), Expect = 2e-93
 Identities = 164/252 (65%), Positives = 199/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE VRFDSDVGE+RAVT LG P AE WNSQKDILE +R  VD VCRHNY +    T+QRR
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  338 bits (868), Expect = 2e-93
 Identities = 164/252 (65%), Positives = 199/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE VRFDSDVGE+RAVT LG P AE WNSQKDILE +R  VD VCRHNY +    T+QRR
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  337 bits (863), Expect = 9e-93
 Identities = 166/260 (63%), Positives = 197/260 (75%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           LR+PGG  +A +T+ L +LS+P+A   D+   F+      C+F NGTERVR + R  +N+
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKGEEPQGKRG 266
            GL I+ R+QKG      RG
Sbjct: 244 AGLFIYFRNQKGHSGLQPRG 263


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  330 bits (846), Expect = 8e-91
 Identities = 165/261 (63%), Positives = 197/261 (75%), Gaps = 1/261 (0%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDF-VYQFKGMCYFTNGTERVRLVSRSIYN 65
           LR+PGG  +A +T+ L +LS+P+A   D+     ++     C+F NGTERVR + R  +N
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63

Query: 66  REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125
           +EE VRFDSDVGEFRAVT LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QR
Sbjct: 64  QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123

Query: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
           RV P VT+ PS+T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE  GVVST LI NGDW
Sbjct: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183

Query: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243

Query: 246 GLGLIIHHRSQKGEEPQGKRG 266
           G GL I+ R+QKG      RG
Sbjct: 244 GAGLFIYFRNQKGHSGLQPRG 264


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  329 bits (843), Expect = 2e-90
 Identities = 159/252 (63%), Positives = 194/252 (76%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+ +A   D+   F+   K  C+F NGTERVR + R  +N+
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHFHNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE  RFDSDVGE+RAV  LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 64  EEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  328 bits (842), Expect = 2e-90
 Identities = 159/252 (63%), Positives = 198/252 (78%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + R IYN+
Sbjct: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE  R++SD+GE++AVT LG P AEYWNSQKD+LER+RA VD  CR+NY +    T+QRR
Sbjct: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V+P VT+ PS+T+ L HHNLLVCSV  FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TV+W A+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 TGLFIYFRNQKG 255


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  327 bits (837), Expect = 9e-90
 Identities = 159/252 (63%), Positives = 195/252 (77%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+ +A   D+   F+   K  C+F NGTERVR + R  +N+
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYFHNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE +RFDSDVGE+RAVT LG P AE WNSQKD+LE+KR  VD  CRHNY +    T+QRR
Sbjct: 64  EEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ S +TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  324 bits (831), Expect = 5e-89
 Identities = 158/253 (62%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSP-EDFVYQFKGMCYFTNGTERVRLVSRSIYN 65
           L++PGG  +A +T+ L +LS+ +A   D+  +  ++  K  C+F NGTERVR + R  +N
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63

Query: 66  REEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQR 125
           +EE  RFDSDVGE+RAV  LG P AEYWNSQKD+LE+KR  VD  CRHNY +    T+QR
Sbjct: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123

Query: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
           RV P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDW
Sbjct: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183

Query: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFL 245
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSG+GGFVLGL+FL
Sbjct: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243

Query: 246 GLGLIIHHRSQKG 258
           G GL I+ R+QKG
Sbjct: 244 GAGLFIYFRNQKG 256


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  317 bits (812), Expect = 7e-87
 Identities = 152/220 (69%), Positives = 178/220 (80%)

Query: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98
           F++Q K  C+F NGTERV+ + R  YN+EE VRFDSDVGE+RAVT LG P AE WNSQKD
Sbjct: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93

Query: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158
           ILE +R  VD VCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153

Query: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213

Query: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  317 bits (812), Expect = 7e-87
 Identities = 152/220 (69%), Positives = 178/220 (80%)

Query: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98
           F++Q K  C+F NGTERV+ + R  YN+EE VRFDSDVGE+RAVT LG P AE WNSQKD
Sbjct: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93

Query: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158
           ILE +R  VD VCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153

Query: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213

Query: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  306 bits (785), Expect = 1e-83
 Identities = 147/220 (66%), Positives = 177/220 (80%)

Query: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98
           F+ Q K  C+F NGTERV  + R IYN+EE  R++SD+GE++AVT LG P AEYWNSQKD
Sbjct: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107

Query: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158
           +LER+RA VD  CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167

Query: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227

Query: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  301 bits (770), Expect = 6e-82
 Identities = 150/244 (61%), Positives = 181/244 (74%)

Query: 15  VATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDS 74
           V  + + L  L + + +G DSPEDFV Q K  CYFTNGTE+V+ V R I+N EE VRFDS
Sbjct: 9   VVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDS 68

Query: 75  DVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTIS 134
           DVG F A+T LG P AE WNS+ D+LER R AVD VCRHNY+L    T+ R+V+P VT+ 
Sbjct: 69  DVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVY 128

Query: 135 PSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLE 194
           P RT  L+ HNLL CSVT FYP  IK++WF N QEE AGV+ST  IRNGDWTFQ +VMLE
Sbjct: 129 PERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLE 188

Query: 195 MTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHR 254
           MTP+ G VYTC V+H SL SP++VEWRAQSE +  KMLSGI  F+LGLIFL +G++I  R
Sbjct: 189 MTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLR 248

Query: 255 SQKG 258
           +QKG
Sbjct: 249 AQKG 252


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  285 bits (728), Expect = 4e-77
 Identities = 147/252 (58%), Positives = 181/252 (71%), Gaps = 13/252 (5%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE VRFDSDVGE+RAVT LG P AE    Q D+L       D      + L         
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----CLPDSFPLPCFLL--------- 110

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYP  I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 111 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 170

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSG+GGFVLGL+FLG
Sbjct: 171 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 230

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 231 AGLFIYFRNQKG 242


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  249 bits (635), Expect = 2e-66
 Identities = 120/179 (67%), Positives = 138/179 (77%)

Query: 36  PEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNS 95
           P  F+ Q K  C+F NGTERVR + R  Y++EE VRFDSDVGE+RAVT LG P AEYWNS
Sbjct: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104

Query: 96  QKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155
           QKD+LE+KRAAVD  CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164

Query: 156 PAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214
           P  I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  188 bits (478), Expect = 4e-48
 Identities = 88/132 (66%), Positives = 108/132 (81%)

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           ++P  T+ P++TE L+H N LVCSV+ FYP  I+VRWF+N QEE A VVS  LI+NGDWT
Sbjct: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSG+GGFVLGL+FLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218

Query: 247 LGLIIHHRSQKG 258
            GL I+ R+QKG
Sbjct: 219 TGLFIYFRNQKG 230


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  128 bits (321), Expect = 6e-30
 Identities = 64/120 (53%), Positives = 87/120 (72%)

Query: 7   LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
           L++PGG  +A +T+ L +LS+P+A   D+   F+ Q K  C+F NGTERV  + R IYN+
Sbjct: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63

Query: 67  EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
           EE  R++SD+GE++AVT LG P AEYWNSQKD+LER+RA VD  CR+NY +    T+QRR
Sbjct: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,622,640
Number of Sequences: 37866
Number of extensions: 445778
Number of successful extensions: 1514
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1394
Number of HSP's gapped (non-prelim): 119
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.