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Search of human proteins with 239748723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748723 PREDICTED: hypothetical protein XP_002346783 [Homo
sapiens]
(541 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748723 PREDICTED: hypothetical protein XP_002346783 [Homo ... 1094 0.0
gi|239754195 PREDICTED: hypothetical protein [Homo sapiens] 949 0.0
gi|239742758 PREDICTED: hypothetical protein XP_002342618 [Homo ... 949 0.0
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 46 1e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 1e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 41 0.003
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 37 0.046
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 37 0.060
gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] 36 0.078
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 36 0.078
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 36 0.10
gi|239756667 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|239751165 PREDICTED: hypothetical protein XP_002347739 [Homo ... 35 0.13
gi|239745650 PREDICTED: hypothetical protein XP_002344167 [Homo ... 35 0.13
gi|154146199 sal-like 3 [Homo sapiens] 35 0.13
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 35 0.17
gi|56549696 E1A binding protein p400 [Homo sapiens] 35 0.17
gi|239751655 PREDICTED: hypothetical protein XP_002347961 [Homo ... 35 0.23
gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1... 35 0.23
gi|153792074 proline rich 12 [Homo sapiens] 35 0.23
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 34 0.30
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 34 0.30
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens] 34 0.30
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 34 0.30
gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 34 0.39
gi|14149696 SEC31 homolog B [Homo sapiens] 34 0.39
gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit prec... 33 0.51
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 33 0.66
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens] 33 0.66
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens] 33 0.66
>gi|239748723 PREDICTED: hypothetical protein XP_002346783 [Homo
sapiens]
Length = 541
Score = 1094 bits (2830), Expect = 0.0
Identities = 541/541 (100%), Positives = 541/541 (100%)
Query: 1 MSSRPLWVTVAMGDGGRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVT 60
MSSRPLWVTVAMGDGGRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVT
Sbjct: 1 MSSRPLWVTVAMGDGGRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVT 60
Query: 61 PASQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALPG 120
PASQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALPG
Sbjct: 61 PASQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALPG 120
Query: 121 PGAAATHTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRIQVQLGNGLEEA 180
PGAAATHTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRIQVQLGNGLEEA
Sbjct: 121 PGAAATHTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRIQVQLGNGLEEA 180
Query: 181 WGRQVDTAAPELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIG 240
WGRQVDTAAPELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIG
Sbjct: 181 WGRQVDTAAPELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIG 240
Query: 241 PHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVPEGLWPLG 300
PHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVPEGLWPLG
Sbjct: 241 PHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVPEGLWPLG 300
Query: 301 LQLSPELGQQQPAQAREKVGAVEQLRPAGVHHLLLAVVIPGRDAPQGGVGLQQRIGGPKV 360
LQLSPELGQQQPAQAREKVGAVEQLRPAGVHHLLLAVVIPGRDAPQGGVGLQQRIGGPKV
Sbjct: 301 LQLSPELGQQQPAQAREKVGAVEQLRPAGVHHLLLAVVIPGRDAPQGGVGLQQRIGGPKV 360
Query: 361 LEEVRGHLQVILHHHGRGEAKLPEDLAQRPAVVARDLVVALELAVVRRHRNAAQVGLPDV 420
LEEVRGHLQVILHHHGRGEAKLPEDLAQRPAVVARDLVVALELAVVRRHRNAAQVGLPDV
Sbjct: 361 LEEVRGHLQVILHHHGRGEAKLPEDLAQRPAVVARDLVVALELAVVRRHRNAAQVGLPDV 420
Query: 421 RDRAAVGGDGLGRLLVPAVLANDDGEELSRGPIMQQLVQAAPNSAAVTGDDQDGNHRRRG 480
RDRAAVGGDGLGRLLVPAVLANDDGEELSRGPIMQQLVQAAPNSAAVTGDDQDGNHRRRG
Sbjct: 421 RDRAAVGGDGLGRLLVPAVLANDDGEELSRGPIMQQLVQAAPNSAAVTGDDQDGNHRRRG 480
Query: 481 GHRHTRLGGRGRGGHPPPLARQGIPDLLQQPTLPLQLHLGVLGQANHFPGEAGGVAIESA 540
GHRHTRLGGRGRGGHPPPLARQGIPDLLQQPTLPLQLHLGVLGQANHFPGEAGGVAIESA
Sbjct: 481 GHRHTRLGGRGRGGHPPPLARQGIPDLLQQPTLPLQLHLGVLGQANHFPGEAGGVAIESA 540
Query: 541 D 541
D
Sbjct: 541 D 541
>gi|239754195 PREDICTED: hypothetical protein [Homo sapiens]
Length = 631
Score = 949 bits (2454), Expect = 0.0
Identities = 478/512 (93%), Positives = 478/512 (93%), Gaps = 33/512 (6%)
Query: 63 SQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLP------ 116
S EEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLP
Sbjct: 120 SVEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPVNCQGP 179
Query: 117 ---------------------------ALPGPGAAATHTRMPPEQALMGEYQETPEGAPC 149
ALPGPGAAATHTRMPPEQALMGEYQETPEGAPC
Sbjct: 180 ECGCEEDVWKDTPPTRKHTLRERVQYVALPGPGAAATHTRMPPEQALMGEYQETPEGAPC 239
Query: 150 FRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRLKV 209
FRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRLKV
Sbjct: 240 FRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRLKV 299
Query: 210 IHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQ 269
IHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQ
Sbjct: 300 IHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQ 359
Query: 270 VQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQLRPAG 329
VQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQLRPAG
Sbjct: 360 VQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQLRPAG 419
Query: 330 VHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQR 389
VHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQR
Sbjct: 420 VHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQR 479
Query: 390 PAVVARDLVVALELAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELS 449
PAVVARDLVVALELAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELS
Sbjct: 480 PAVVARDLVVALELAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELS 539
Query: 450 RGPIMQQLVQAAPNSAAVTGDDQDGNHRRRGGHRHTRLGGRGRGGHPPPLARQGIPDLLQ 509
RGPIMQQLVQAAPNSAAVTGDDQDGNHRRRGGHRHTRLGGRGRGGHPPPLARQGIPDLLQ
Sbjct: 540 RGPIMQQLVQAAPNSAAVTGDDQDGNHRRRGGHRHTRLGGRGRGGHPPPLARQGIPDLLQ 599
Query: 510 QPTLPLQLHLGVLGQANHFPGEAGGVAIESAD 541
QPTLPLQLHLGVLGQANHFPGEAGGVAIESAD
Sbjct: 600 QPTLPLQLHLGVLGQANHFPGEAGGVAIESAD 631
>gi|239742758 PREDICTED: hypothetical protein XP_002342618 [Homo
sapiens]
Length = 631
Score = 949 bits (2454), Expect = 0.0
Identities = 478/512 (93%), Positives = 478/512 (93%), Gaps = 33/512 (6%)
Query: 63 SQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLP------ 116
S EEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLP
Sbjct: 120 SVEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPVNCQGP 179
Query: 117 ---------------------------ALPGPGAAATHTRMPPEQALMGEYQETPEGAPC 149
ALPGPGAAATHTRMPPEQALMGEYQETPEGAPC
Sbjct: 180 ECGCEEDVWKDTPPTRKHTLRERVQYVALPGPGAAATHTRMPPEQALMGEYQETPEGAPC 239
Query: 150 FRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRLKV 209
FRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRLKV
Sbjct: 240 FRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRLKV 299
Query: 210 IHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQ 269
IHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQ
Sbjct: 300 IHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQ 359
Query: 270 VQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQLRPAG 329
VQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQLRPAG
Sbjct: 360 VQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQLRPAG 419
Query: 330 VHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQR 389
VHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQR
Sbjct: 420 VHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQR 479
Query: 390 PAVVARDLVVALELAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELS 449
PAVVARDLVVALELAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELS
Sbjct: 480 PAVVARDLVVALELAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELS 539
Query: 450 RGPIMQQLVQAAPNSAAVTGDDQDGNHRRRGGHRHTRLGGRGRGGHPPPLARQGIPDLLQ 509
RGPIMQQLVQAAPNSAAVTGDDQDGNHRRRGGHRHTRLGGRGRGGHPPPLARQGIPDLLQ
Sbjct: 540 RGPIMQQLVQAAPNSAAVTGDDQDGNHRRRGGHRHTRLGGRGRGGHPPPLARQGIPDLLQ 599
Query: 510 QPTLPLQLHLGVLGQANHFPGEAGGVAIESAD 541
QPTLPLQLHLGVLGQANHFPGEAGGVAIESAD
Sbjct: 600 QPTLPLQLHLGVLGQANHFPGEAGGVAIESAD 631
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 45.8 bits (107), Expect = 1e-04
Identities = 72/313 (23%), Positives = 108/313 (34%), Gaps = 39/313 (12%)
Query: 11 AMGDGGRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEA--L 68
A G G R P + G + P A+ + P G+ ++ + E V EA
Sbjct: 96 ASGRGERAPPAKNTSPGP--VSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKR 153
Query: 69 AGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALPGPGAAATHT 128
+ +AG DT +GP G P P A+ AG E+G LP+ P P A
Sbjct: 154 SALSAGARRDT--SGPTPGTPSP-AMARRSRAAGT-EVG----LPR----PAPSARPRPP 201
Query: 129 RMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTA 188
P +++ + + P P R + G GL+ R + ++
Sbjct: 202 TEGPRKSVSSASEHSTT----------------EPSPAARRRPSAGGGLQRPASRSLSSS 245
Query: 189 APELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQL 248
A L S+R H +Q + L+A+ + P P +GP L
Sbjct: 246 ATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGP-LSSSPL 304
Query: 249 GSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELG 308
+ + S L L PLP L PP P P LQ P
Sbjct: 305 ATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLP-LAPPSPSAPP-----SLQTLPSPP 358
Query: 309 QQQPAQAREKVGA 321
P+QA +G+
Sbjct: 359 ATPPSQATTSLGS 371
Score = 40.0 bits (92), Expect = 0.005
Identities = 77/313 (24%), Positives = 109/313 (34%), Gaps = 38/313 (12%)
Query: 19 PLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEALAGRTAGPESD 78
PL + G A P + A Q P+G +++ VTP ++ A A GP S
Sbjct: 248 PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ---VTPPRKDAAPA---LGPLSS 301
Query: 79 TQVTGPEQGRP----RPTALYDIGHQAGL--QEIGPWCLLPKLPALPGPGAAATHTRMPP 132
+ + P P L H + L Q P L P P P A + +P
Sbjct: 302 SPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAP-----PSPSAPPSLQTLPS 356
Query: 133 EQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRI---QVQLGNGLEEAWGRQVDTAA 189
A T G+P ++ T SF+ PP+ L Q L A+
Sbjct: 357 PPATPPSQATTSLGSPTLQA--THSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPAS 414
Query: 190 PELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLG 249
P L TP S + P +H Q+ + P + P P P + P
Sbjct: 415 PPLSPLATP--SPQAPNALAVHLLQAPFSPPPSPPVQA--PFSPPASPPVSP-------S 463
Query: 250 STVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQ 309
+T + S+ PLQV A PP+ P P P L LQL+ Q
Sbjct: 464 ATPPSQAPPSLAAPPLQVPP-----SPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQ 518
Query: 310 QQPAQAREKVGAV 322
PA A + A+
Sbjct: 519 APPALATPPLQAL 531
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 45.4 bits (106), Expect = 1e-04
Identities = 80/349 (22%), Positives = 123/349 (35%), Gaps = 43/349 (12%)
Query: 11 AMGDGGRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEA--L 68
A G G R P + G + P A+ + P G+ ++ + E V EA
Sbjct: 96 ASGRGERAPPAKNTSPGP--VSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKR 153
Query: 69 AGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALPGPGAAATHT 128
+ +AG DT +GP G P P A+ AG E+G LP+ P P A
Sbjct: 154 SALSAGARRDT--SGPTPGTPSP-AMARRSRAAGT-EVG----LPR----PAPSARPRPP 201
Query: 129 RMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTA 188
P +++ + + P P R + G GL+ R + ++
Sbjct: 202 TEGPRKSVSSASEHSTT----------------EPSPAARRRPSAGGGLQRPASRSLSSS 245
Query: 189 APELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQL 248
A L S+R H +Q + L+A+ + P P +GP L
Sbjct: 246 ATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGP-LSSSPL 304
Query: 249 GSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPL--PL-LRPPHPVVPEGLWPLGLQLSP 305
+ +G + + P L PPL PL L PP P P L L +
Sbjct: 305 ATPSPSGTKARPVP-PPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPAT 363
Query: 306 ELGQQQPAQAREKVGA---VEQLRPAGVHHLLLAVVIPGRDAPQGGVGL 351
Q P+ + A ++ + P V H L + P AP + L
Sbjct: 364 PPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTS---PSLQAPPSPLAL 409
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 40.8 bits (94), Expect = 0.003
Identities = 53/233 (22%), Positives = 84/233 (36%), Gaps = 32/233 (13%)
Query: 11 AMGDGGRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEA--L 68
A G G R P + G + P A+ + P G+ ++ + E V EA
Sbjct: 87 ASGRGERAPPAKNTSPGP--VSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKR 144
Query: 69 AGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALPGPGAAATHT 128
+ +AG DT +GP G P P A+ AG E+G LP+ P P A
Sbjct: 145 SALSAGARRDT--SGPTPGTPSP-AMARRSRAAGT-EVG----LPR----PAPSARPRPP 192
Query: 129 RMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTA 188
P +++ + + P P R + G GL+ R + ++
Sbjct: 193 TEGPRKSVSSASEHSTT----------------EPSPAARRRPSAGGGLQRPASRSLSSS 236
Query: 189 APELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIGP 241
A L S+R H +Q + L+A+ + P P +GP
Sbjct: 237 ATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGP 289
Score = 39.7 bits (91), Expect = 0.007
Identities = 86/348 (24%), Positives = 119/348 (34%), Gaps = 62/348 (17%)
Query: 19 PLPRTLQQGAQAATQ---PHSAASVLQAPPQGRP--SVKTTTEGCVT---PASQEEALAG 70
P P ++ A T+ P A S PP P SV + +E T PA++ AG
Sbjct: 163 PSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAG 222
Query: 71 ------------RTAGPESDTQVTGPE-QGRPRPTALYDIGHQAGLQEIGPWCLLPK--- 114
+A P S +GP +G PR A GLQ + P + P
Sbjct: 223 GGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKD 282
Query: 115 -LPAL----------------PGPGAAATHTRMPPEQALMGEYQETPEGAPCFRSLRTQS 157
PAL P P A + +P A T G+P ++ T S
Sbjct: 283 AAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA--THS 340
Query: 158 FVLRPPVPGLRI---QVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRLKVIHDTQ 214
F+ PP+ L Q L A+P L TP S + P +H Q
Sbjct: 341 FLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATP--SPQAPNALAVHLLQ 398
Query: 215 SLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDL 274
+ + P + P P P + P +T + S+ PLQV
Sbjct: 399 APFSPPPSPPVQA--PFSPPASPPVSP-------SATPPSQAPPSLAAPPLQVPP----- 444
Query: 275 RAYAGPPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAV 322
A PP+ P P P L LQL+ Q PA A + A+
Sbjct: 445 SPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQAL 492
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 37.0 bits (84), Expect = 0.046
Identities = 59/267 (22%), Positives = 92/267 (34%), Gaps = 51/267 (19%)
Query: 30 AATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEALAGRTAGPESDTQVT------- 82
AA P +AA++ Q SV G + S EA+A RT GP QV
Sbjct: 401 AAASPATAATLPVGTGQNASSVGAQLMGASSQPS--EAMAPRT-GPAQGGQVAPCQPTGV 457
Query: 83 -------------GPE-QGRPRPTALYDIGHQAGLQEI--GPWCLLPKLPALPG------ 120
GP G+P+ +G L + GP ++P +P +P
Sbjct: 458 PPATVGGVVQPCLGPAGAGQPQSVPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAPS 517
Query: 121 -PGAAATHTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVPGLRIQVQLGNGLEE 179
P + T MP A + + Q+ P RS V P PG
Sbjct: 518 VPSVSTTSVTMPNVPAPLAQSQQLSSHTPVSRSSSIIQHVGLPLAPGT------------ 565
Query: 180 AWGRQVDTAAPELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVI 239
T+ P + D + + P + + DT+ E L P ++ + P + P +
Sbjct: 566 ---HSAPTSLP--QSDLSQFQTQTQPLVGQVDDTRRKSEPLPQPPLSLIAENKPVVKPPV 620
Query: 240 GPHFLH-LQLGSTVDAGEEISVIGLPL 265
+ LQL + I +P+
Sbjct: 621 ADSLANPLQLTPMNSLATSVFSIAIPV 647
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 36.6 bits (83), Expect = 0.060
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 26 QGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEALAGRTAGPESDTQVTGPE 85
Q A AA+ P A + AP Q P+V ++ + + +A P + V P
Sbjct: 440 QKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPP 499
Query: 86 QGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALPGPGAAATHTR--------MPPEQ--A 135
Q P P+ + + P K LP P A T PP
Sbjct: 500 QKTPPPSQKAPSVPTIPQKAVSPTAPKKKSLLLPAPSQKALPTSPTEYQMALSPPASRGK 559
Query: 136 LMGEYQETPEGAPCFRSL-RTQSFVLRPPVPGLRIQ 170
L G++ P G P L R+QS PV +R Q
Sbjct: 560 LPGDFDVLPTGIPGRAVLERSQSGGKPEPVVTVRTQ 595
>gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]
Length = 869
Score = 36.2 bits (82), Expect = 0.078
Identities = 67/281 (23%), Positives = 101/281 (35%), Gaps = 38/281 (13%)
Query: 64 QEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWC-LLPKLPALPGPG 122
Q ++ R AGP DTQ PTA + AG + W L K+P P
Sbjct: 602 QVDSSLRRDAGPPGDTQ-----PDCHAPTASWTSQDTAGCSQ---WLKALLKVPLAPPVW 653
Query: 123 AAAT--HTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLR-----------PPVPGLRI 169
A T H +M L E +E +++ +L+ PP P +
Sbjct: 654 TAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMARGQLLLQRDLGSLPAAEPPPAPESGL 713
Query: 170 QVQLGNGLEEAW-GRQVDTAAPELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPAR-I 227
+ +L L EAW GR + + P +R P+ + + S S P+
Sbjct: 714 EDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQTRRPKRRT-QLSSSFSLSGHVDPSEDT 772
Query: 228 LHPHLPQLLPVIGPHFLHLQLGSTVDAGEEIS----VIGLPLQVRQVQLDLRAYAGP--- 280
PH P+ P L L T +E++ G+P + RQ+ D A P
Sbjct: 773 SSPHSPEWPPADA-----LPLPPTTPPSQELTPDACAQGVPSEQRQMLRDYMAKLPPQRD 827
Query: 281 -PLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVG 320
P PPH Q +P L QP + + ++G
Sbjct: 828 TPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRMG 868
>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
Length = 775
Score = 36.2 bits (82), Expect = 0.078
Identities = 67/281 (23%), Positives = 101/281 (35%), Gaps = 38/281 (13%)
Query: 64 QEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWC-LLPKLPALPGPG 122
Q ++ R AGP DTQ PTA + AG + W L K+P P
Sbjct: 508 QVDSSLRRDAGPPGDTQ-----PDCHAPTASWTSQDTAGCSQ---WLKALLKVPLAPPVW 559
Query: 123 AAAT--HTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLR-----------PPVPGLRI 169
A T H +M L E +E +++ +L+ PP P +
Sbjct: 560 TAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMARGQLLLQRDLGSLPAAEPPPAPESGL 619
Query: 170 QVQLGNGLEEAW-GRQVDTAAPELEGDNTPVASSRNPRLKVIHDTQSLGESLEAVPAR-I 227
+ +L L EAW GR + + P +R P+ + + S S P+
Sbjct: 620 EDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQTRRPKRRT-QLSSSFSLSGHVDPSEDT 678
Query: 228 LHPHLPQLLPVIGPHFLHLQLGSTVDAGEEIS----VIGLPLQVRQVQLDLRAYAGP--- 280
PH P+ P L L T +E++ G+P + RQ+ D A P
Sbjct: 679 SSPHSPEWPPADA-----LPLPPTTPPSQELTPDACAQGVPSEQRQMLRDYMAKLPPQRD 733
Query: 281 -PLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVG 320
P PPH Q +P L QP + + ++G
Sbjct: 734 TPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRMG 774
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 35.8 bits (81), Expect = 0.10
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 280 PPLPLLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVE-QLRPAGVHHLLLAVV 338
PP P PP P P+ P+ LSP+ QQQ ++ E +RP G L V
Sbjct: 542 PPPPPPPPPPPGPPQMPMPVHEPLSPQQLQQQDMYNKKIPSLFEIVVRPTGQLAEKLGVR 601
Query: 339 IPGRDAPQGGVGLQQRIGGP 358
PG P G +G +G P
Sbjct: 602 FPGPGGPPGPMGPGPNMGPP 621
>gi|239756667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 484
Score = 35.4 bits (80), Expect = 0.13
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 346 QGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQRPAVVARDLVVALELAV 405
Q GVG + R+G K HL V L G L E AQ + ++++ + L V
Sbjct: 119 QCGVGARARLGLEKSGPRAEAHLAVQLDVLGEERVDLGERAAQAAGMHVQEVLDRVHLVV 178
Query: 406 VRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEE--LSRGPIMQQLVQAAPN 463
+ + ++ P RD GG L P G+E L ++ QL+Q
Sbjct: 179 LHKMLPILELPSPSSRDALHRGGP-----LPPPTHGRCSGDEVRLHEQDVLAQLLQTRRE 233
Query: 464 SAAVTGDD 471
A + D
Sbjct: 234 QAGLLSQD 241
>gi|239751165 PREDICTED: hypothetical protein XP_002347739 [Homo
sapiens]
Length = 484
Score = 35.4 bits (80), Expect = 0.13
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 346 QGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQRPAVVARDLVVALELAV 405
Q GVG + R+G K HL V L G L E AQ + ++++ + L V
Sbjct: 119 QCGVGARARLGLEKSGPRAEAHLAVQLDVLGEERVDLGERAAQAAGMHVQEVLDRVHLVV 178
Query: 406 VRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEE--LSRGPIMQQLVQAAPN 463
+ + ++ P RD GG L P G+E L ++ QL+Q
Sbjct: 179 LHKMLPILELPSPSSRDALHRGGP-----LPPPTHGRCSGDEVRLHEQDVLAQLLQTRRE 233
Query: 464 SAAVTGDD 471
A + D
Sbjct: 234 QAGLLSQD 241
>gi|239745650 PREDICTED: hypothetical protein XP_002344167 [Homo
sapiens]
Length = 484
Score = 35.4 bits (80), Expect = 0.13
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 346 QGGVGLQQRIGGPKVLEEVRGHLQVILHHHGRGEAKLPEDLAQRPAVVARDLVVALELAV 405
Q GVG + R+G K HL V L G L E AQ + ++++ + L V
Sbjct: 119 QCGVGARARLGLEKSGPRAEAHLAVQLDVLGEERVDLGERAAQAAGMHVQEVLDRVHLVV 178
Query: 406 VRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEE--LSRGPIMQQLVQAAPN 463
+ + ++ P RD GG L P G+E L ++ QL+Q
Sbjct: 179 LHKMLPILELPSPSSRDALHRGGP-----LPPPTHGRCSGDEVRLHEQDVLAQLLQTRRE 233
Query: 464 SAAVTGDD 471
A + D
Sbjct: 234 QAGLLSQD 241
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 35.4 bits (80), Expect = 0.13
Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 16/141 (11%)
Query: 16 GRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEALAGRTAGP 75
G GP +GAQ ++P S AS P + PS PA+ A A ++A
Sbjct: 277 GSGPAAPAAFEGAQPLSRPESGASTPGGPAE--PSAPAAPSAAPAPAAPAPAPAPQSAAS 334
Query: 76 ESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPA----LPGP--GAAATHTR 129
+ P P +G GL P LLP+ A P P AAT
Sbjct: 335 SQPQSASTPPALAPGSL----LGAAPGL----PSPLLPQTSASGVIFPNPLVSIAATANA 386
Query: 130 MPPEQALMGEYQETPEGAPCF 150
+ P ALM + P F
Sbjct: 387 LDPLSALMKHRKGKPPNVSVF 407
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 35.0 bits (79), Expect = 0.17
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 14 DGGRGPLPRTLQQGAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEALAGRTA 73
+G RGP R + GA+AA P SA P RPS + E + A A GR
Sbjct: 71 EGARGP--RAARGGARAAPMPSSAPRGPTEPALRRPS---SAERPLAQAPSSSASVGRAP 125
Query: 74 G----PESDTQVTGPEQGR 88
G P ++ TG +GR
Sbjct: 126 GAMASPSRSSEATGKPRGR 144
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 35.0 bits (79), Expect = 0.17
Identities = 49/173 (28%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 200 ASSRNPRLKVIHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFL--HLQLGSTVDAGEE 257
A +R P +V+ Q S+ +R+ P P L G F H QL + AG+
Sbjct: 1557 AQARLPSGEVVKIAQLA--SITGPQSRVAQPETPVTLQFQGSKFTLSHSQLRQ-LTAGQP 1613
Query: 258 ISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPHPVVPEGLWPLG-----LQLSPELGQQQP 312
+ + G LQ+ + P P LR P PVV + + G L P G P
Sbjct: 1614 LQLQGSVLQI---------VSAPGQPYLRAPGPVVMQTVSQAGAVHGALGSKPPAGGPSP 1664
Query: 313 AQAREKVGAVEQLRPAGVHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVR 365
A +VG P V LAV PG + IGGP E+ R
Sbjct: 1665 APLTPQVGV-----PGRVAVNALAVGEPGTASKPA-----SPIGGPTQEEKTR 1707
Score = 29.3 bits (64), Expect = 9.6
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 19 PLPRTLQQGAQAAT-----------QPHSAASVLQAPPQGRPSVKTTTEGCVTPASQEEA 67
PLP+ G+Q QP + +QAP + +P++ T V + + +
Sbjct: 2523 PLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQAPAKAQPAITTGGSAAVLAGTIKTS 2582
Query: 68 LAGRT--AGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLP-ALPGPGAA 124
+ G + G S + G P T Q I P P AL PG +
Sbjct: 2583 VTGTSMPTGAVSGNVIVNTIAGVPAAT----------FQSINKRLASPVAPGALTTPGGS 2632
Query: 125 A----THTRMPPEQALMGEYQETPE 145
A HT+ PP +A+ TP+
Sbjct: 2633 APAQVVHTQ-PPPRAVGSPATATPD 2656
>gi|239751655 PREDICTED: hypothetical protein XP_002347961 [Homo
sapiens]
Length = 642
Score = 34.7 bits (78), Expect = 0.23
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 44 PPQGRPSVKTTTEGCVTPASQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQ 100
P +GR + T+ C TP SQE +G A P D Q+ GP P L H+
Sbjct: 7 PSRGRKTEIPTSLWCKTPGSQE---SGNAASPSPDGQLAGPRPSAPDWMRLQSPSHR 60
>gi|38261971 cyclic AMP-regulated phosphoprotein, 21 kD isoform 1
[Homo sapiens]
Length = 812
Score = 34.7 bits (78), Expect = 0.23
Identities = 75/342 (21%), Positives = 123/342 (35%), Gaps = 44/342 (12%)
Query: 46 QGRPSVKTTTEGCVTPASQEEALAGRTAGPESDTQ--------VTGPEQGRPR--PTALY 95
+G + T + G ++ A E + + ++G S T V+G G P P
Sbjct: 392 RGDSTSSTRSTGKLSKAGSESSSSAGSSGSLSRTHPPLQSTPLVSGVAAGSPGCVPYPEN 451
Query: 96 DIGHQAGLQEIGPWCLLPKLPALPGPGAAATHTRMPPEQALM----GEYQETPEGAPCFR 151
IG Q + LLP A T +PP L+ G+ P+G P
Sbjct: 452 GIGGQVAPSSTS-YILLPLEAA----------TGIPPGSILLNPHTGQPFVNPDGTPAIY 500
Query: 152 SLRTQSFVLRPPVPGLRIQVQLGNGLEEAWGRQVDTAAPELEGDNTPVASSRNPRL---- 207
+ T LR + G Q +QV P++ G P+ + R+
Sbjct: 501 NPPTSQQPLRSAMVGQSQQQPPQQQPSPQPQQQVQPPQPQMAG---PLVTQRDDVATQFG 557
Query: 208 KVIHDTQSLGESLEAVPARILHPHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQV 267
++ QS GE+ E P+ ++P P P ++ G + G S G P+
Sbjct: 558 QMTLSRQSSGETPEP-PSGPVYPSSLMPQPAQQPSYVIASTGQQLPTGG-FSGSGPPISQ 615
Query: 268 RQVQLDLRAYAGPPLP---LLRPPHPVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQ 324
+ +Q PP P + +PP +P +P G + Q +P + Q
Sbjct: 616 QVLQ-------PPPSPQGFVQQPPPAQMPVYYYPSGQYPTSTTQQYRPMAPVQYNAQRSQ 668
Query: 325 LRPAGVHHLLLAVVIPGRDAPQGGVGLQQRIGGPKVLEEVRG 366
P V+ G+ QG +G+QQ V+ +G
Sbjct: 669 QMPQAAQQAGYQPVLSGQQGFQGLIGVQQPPQSQNVINNQQG 710
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 34.7 bits (78), Expect = 0.23
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 10/122 (8%)
Query: 230 PHLPQLLPVIGPHFLHLQLGSTVDAGEEISVIGLPLQVRQVQLDLRAYAGPPLPLLRPPH 289
P LP +LP P L L S +G+ L L+ G P P PP
Sbjct: 788 PDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHL------LEPATRDGAPQP---PPP 838
Query: 290 PVVPEGLWPLGLQLSPELGQQQPAQAREKVGAVEQLRPAGVHHLLLAVVIPGRDAP-QGG 348
P P PL L+ +PA ++ E L P G LL + P AP G
Sbjct: 839 PPPPPPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLGALEPLPPAPGDTG 898
Query: 349 VG 350
VG
Sbjct: 899 VG 900
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 34.3 bits (77), Expect = 0.30
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 60 TPASQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALP 119
+P SQE G G +D G R A L E+ PW +P+L
Sbjct: 18 SPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEV-----EGARLAEVPPW-----VPSLV 67
Query: 120 GPGAAATHTRMPPEQALMGEYQETPEGAP 148
PG+ A H R P +AL ++ P P
Sbjct: 68 PPGSGAAHRRAPSAEALPMSHRPAPRQKP 96
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 34.3 bits (77), Expect = 0.30
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 60 TPASQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALP 119
+P SQE G G +D G R A L E+ PW +P+L
Sbjct: 18 SPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEV-----EGARLAEVPPW-----VPSLV 67
Query: 120 GPGAAATHTRMPPEQALMGEYQETPEGAP 148
PG+ A H R P +AL ++ P P
Sbjct: 68 PPGSGAAHRRAPSAEALPMSHRPAPRQKP 96
>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 34.3 bits (77), Expect = 0.30
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 60 TPASQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPALP 119
+P SQE G G +D G R A L E+ PW +P+L
Sbjct: 18 SPRSQEALRVGGEVGSRADLWGGGRGYCGTRVEV-----EGARLAEVPPW-----VPSLV 67
Query: 120 GPGAAATHTRMPPEQALMGEYQETPEGAP 148
PG+ A H R P +AL ++ P P
Sbjct: 68 PPGSGAAHRRAPSAEALPMSHRPAPRQKP 96
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 34.3 bits (77), Expect = 0.30
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 71 RTAGPESDTQVTGPEQGRPRPTALYDI--GHQAG-LQEIGPWCLLPKLPALPGPGAAATH 127
R G ES+ V G E GR LY + G + G + +G + P P T
Sbjct: 2456 RVGGEESEVTVGGLEPGRKYKMHLYGLHEGRRVGPVSTVGVTAPQEDVDETPSPTEPGTE 2515
Query: 128 TRMPPEQALMGEYQET 143
PPE+ L+GE T
Sbjct: 2516 APGPPEEPLLGELTVT 2531
Score = 31.6 bits (70), Expect = 1.9
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 63 SQEEALAGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPK------LP 116
+Q + A AG E++ V G + R LY + G Q +GP ++ K +
Sbjct: 1298 AQGQPQAVPVAGDENEVTVPGLDPDRKYKMNLYGL---RGRQRVGPESVVAKTAPQEDVD 1354
Query: 117 ALPGPGAAATHTRMPPEQALMGEYQET---PEGAPCFRSLRTQSF 158
P P T PE+ L+GE T P+ F ++ SF
Sbjct: 1355 ETPSPTELGTEAPESPEEPLLGELTVTGSSPDSLSLFWTVPQGSF 1399
Score = 29.6 bits (65), Expect = 7.3
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 69 AGRTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPA---LPGPGAAA 125
A R G E ++G E LY G G Q +GP ++ A P P +
Sbjct: 2671 AVRVPGHEDGVTISGLEPDHKYKMNLY--GFHGG-QRVGPISVIGVTAAEEETPSPTELS 2727
Query: 126 THTRMPPEQALMGEYQET 143
T PPE+ L+GE T
Sbjct: 2728 TEAPEPPEEPLLGELTVT 2745
Score = 29.3 bits (64), Expect = 9.6
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 71 RTAGPESDTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKLPA---LPGPGAAATH 127
R G E ++G E LY G G Q +GP ++ A P P +T
Sbjct: 2887 RVPGHEDGVTISGLEPDHKYKMNLY--GFHGG-QRVGPISVIGVTAAEEETPAPTEPSTE 2943
Query: 128 TRMPPEQALMGEYQET 143
PPE+ L+GE T
Sbjct: 2944 APEPPEEPLLGELTVT 2959
>gi|4559408 colony stimulating factor 2 receptor, beta precursor
[Homo sapiens]
Length = 897
Score = 33.9 bits (76), Expect = 0.39
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 27 GAQAATQPHSAASVLQAPPQGRPSVKTTTEGCVT--PASQEEALAGRT--AGPESDTQVT 82
G + P + PP VK+ EG V P + R PE+ + V
Sbjct: 735 GLPSDQTPSLCPGLASGPPGAPGPVKSGFEGYVELPPIEGRSPRSPRNNPVPPEAKSPVL 794
Query: 83 GPEQGRPR---PTALYDIGHQAGLQEIGPWCLLPKL----------PALPGPGA------ 123
P + RP PT+ G LQ++G +C LP L P+ PGPG
Sbjct: 795 NPGE-RPADVSPTSPQPEGLLV-LQQVGDYCFLPGLGPGPLSLRSKPSSPGPGPEIKNLD 852
Query: 124 AATHTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPP 163
A + PP QA+ + P F++L+ Q ++ PP
Sbjct: 853 QAFQVKKPPGQAV----PQVPV-IQLFKALKQQDYLSLPP 887
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 33.9 bits (76), Expect = 0.39
Identities = 36/111 (32%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 59 VTPASQEEALAG--RTAGPES-DTQVTGPEQGRPRPTALYDIGHQAGLQEIGPWCLLPKL 115
V PAS + L G R P T P G P P A I L P L
Sbjct: 881 VRPASSQPQLLGGQRVQVPNPVGFPGTWPLPGSPLPMACPGIMRPGSTSLPETPRLFPLL 940
Query: 116 PALP-GPGAAATHTRMPPEQALMGEYQETPEGAPCFRSLRTQSFVLRPPVP 165
P P GPG +HT PP + Y GAPC L T + P P
Sbjct: 941 PLRPLGPGRMVSHTPAPP-ASFPVPYLPGDPGAPCSSVLPTTGILTPHPGP 990
>gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit
precursor [Homo sapiens]
Length = 627
Score = 33.5 bits (75), Expect = 0.51
Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 37/130 (28%)
Query: 101 AGLQEIGP----WCLLPKLPALPGPGAAATHTRMPPEQALMGEYQET-PEGAPCFRSLRT 155
+G Q + P +C+ +PA PGP + ++PP+Q L E P PC
Sbjct: 396 SGTQSLHPPSPSFCVPLDVPAEPGPSCKSPSDQLPPQQPLEAEKASPHPSPGPC------ 449
Query: 156 QSFVLRPP----VPGL----RIQVQLGNGLEEAWGRQV-------------DTAAPELEG 194
RPP PGL + VQ + EA V D AAPE +G
Sbjct: 450 -----RPPHGTQAPGLAKARSLSVQHMSSPGEAVEGGVRCRSRSIQYCVPRDDAAPEADG 504
Query: 195 DNTPVASSRN 204
+SRN
Sbjct: 505 QAAGALASRN 514
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.1 bits (74), Expect = 0.66
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 403 LAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELSRGPIMQQLVQAAP 462
L+ RR R + G + + A G V ++D EE Q V AAP
Sbjct: 41 LSPQRRTRRRERRGEREADEGEATSFPGPCAAHVAGAPEDEDDEE--------QAVAAAP 92
Query: 463 NSAAVTGDDQDGNHRRRGG-HRHTRLGGRGRGGHPPPLARQGIP 505
++ T G+ RR RH G GRG PP L R+ P
Sbjct: 93 HAHTATASPPPGSARRAAAVARHA--GSEGRGWRPPGLGREAGP 134
>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.1 bits (74), Expect = 0.66
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 403 LAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELSRGPIMQQLVQAAP 462
L+ RR R + G + + A G V ++D EE Q V AAP
Sbjct: 41 LSPQRRTRRRERRGEREADEGEATSFPGPCAAHVAGAPEDEDDEE--------QAVAAAP 92
Query: 463 NSAAVTGDDQDGNHRRRGG-HRHTRLGGRGRGGHPPPLARQGIP 505
++ T G+ RR RH G GRG PP L R+ P
Sbjct: 93 HAHTATASPPPGSARRAAAVARHA--GSEGRGWRPPGLGREAGP 134
>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.1 bits (74), Expect = 0.66
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 403 LAVVRRHRNAAQVGLPDVRDRAAVGGDGLGRLLVPAVLANDDGEELSRGPIMQQLVQAAP 462
L+ RR R + G + + A G V ++D EE Q V AAP
Sbjct: 41 LSPQRRTRRRERRGEREADEGEATSFPGPCAAHVAGAPEDEDDEE--------QAVAAAP 92
Query: 463 NSAAVTGDDQDGNHRRRGG-HRHTRLGGRGRGGHPPPLARQGIP 505
++ T G+ RR RH G GRG PP L R+ P
Sbjct: 93 HAHTATASPPPGSARRAAAVARHA--GSEGRGWRPPGLGREAGP 134
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,073,819
Number of Sequences: 37866
Number of extensions: 1552736
Number of successful extensions: 6207
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 5941
Number of HSP's gapped (non-prelim): 425
length of query: 541
length of database: 18,247,518
effective HSP length: 107
effective length of query: 434
effective length of database: 14,195,856
effective search space: 6161001504
effective search space used: 6161001504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.