Guide to the Human Genome
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Name: LOC100292927 Sequence: fasta or formatted (631aa) NCBI GI: 239754195
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         49           3
 C cysteine            1.1          7           1
 D aspartate           4.4         28           2
 E glutamate           6.5         41           2
 F phenylalanine       1.1          7           1
 G glycine            10.6         67           2
 H histidine           4.8         30           3
 I isoleucine          3.0         19           1
 K lysine              1.9         12           1
 L leucine            11.9         75           3
 M methionine          1.1          7           1
 N asparagine          2.4         15           1
 P proline            10.3         65           3
 Q glutamine           7.4         47           3
 R arginine            7.6         48           3
 S serine              3.8         24           2
 T threonine           4.3         27           1
 V valine              8.4         53           2
 W tryptophan          0.8          5           1
 Y tyrosine            0.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289003          0.998   PREDICTED: hypothetical protein XP_002342618 
LOC100290264          0.730   PREDICTED: hypothetical protein XP_002346783 
ZC3H4                 0.009   zinc finger CCCH-type containing 4 
LOC100293709          0.008   PREDICTED: hypothetical protein 
LOC100290329          0.008   PREDICTED: hypothetical protein XP_002347739 
LOC100289615          0.008   PREDICTED: hypothetical protein XP_002344167 
ARPP-21               0.008   cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...
EP400                 0.008   E1A binding protein p400 
PRR12                 0.008   proline rich 12 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
LOC100132247          0.006   hypothetical protein LOC100132247 
LOC730060             0.006   PREDICTED: hypothetical protein 
LOC730060             0.006   PREDICTED: hypothetical protein 
LOC730060             0.006   PREDICTED: hypothetical protein 
MLL2                  0.006   myeloid/lymphoid or mixed-lineage leukemia 2 
NPIPL3                0.006   nuclear pore complex interacting protein-like 3 [Ho...
FLJ22184              0.006   PREDICTED: hypothetical protein LOC80164 
C7orf47               0.006   hypothetical protein LOC221908 
LOC100294067          0.006   PREDICTED: similar to rCG47812 
TLE1                  0.006   transducin-like enhancer protein 1 
HCN3                  0.006   hyperpolarization activated cyclic nucleotide-gated ...
HECW2                 0.006   HECT, C2 and WW domain containing E3 ubiquitin prote...
MLL3                  0.006   myeloid/lymphoid or mixed-lineage leukemia 3 
FXR1                  0.006   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.006   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.006   fragile X mental retardation-related protein 1 isofo...
C6orf132              0.006   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.006   PREDICTED: chromosome 6 open reading frame 132 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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