Guide to the Human Genome
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Name: LOC100290264 Sequence: fasta or formatted (541aa) NCBI GI: 239748723
Description:

PREDICTED: hypothetical protein XP_002346783

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         55           3
 C cysteine            0.6          3           1
 D aspartate           3.9         21           2
 E glutamate           5.7         31           2
 F phenylalanine       0.7          4           1
 G glycine            12.0         65           2
 H histidine           4.1         22           3
 I isoleucine          2.6         14           1
 K lysine              1.1          6           1
 L leucine            12.8         69           3
 M methionine          0.9          5           1
 N asparagine          1.5          8           1
 P proline            11.1         60           3
 Q glutamine           8.1         44           3
 R arginine            7.8         42           3
 S serine              3.5         19           2
 T threonine           4.1         22           3
 V valine              8.1         44           2
 W tryptophan          0.7          4           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346783 
LOC100292927          0.864   PREDICTED: hypothetical protein 
LOC100289003          0.864   PREDICTED: hypothetical protein XP_002342618 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.015   PREDICTED: hypothetical protein LOC80164 
TSC22D2               0.011   TSC22 domain family, member 2 
FAM71E2               0.011   hypothetical protein LOC284418 
TAF1C                 0.010   TBP-associated factor 1C isoform 1 
TAF1C                 0.010   TBP-associated factor 1C isoform 2 
ZC3H4                 0.010   zinc finger CCCH-type containing 4 
LOC100293709          0.009   PREDICTED: hypothetical protein 
LOC100290329          0.009   PREDICTED: hypothetical protein XP_002347739 
LOC100289615          0.009   PREDICTED: hypothetical protein XP_002344167 
SALL3                 0.009   sal-like 3 
LOC728650             0.009   PREDICTED: hypothetical protein 
EP400                 0.009   E1A binding protein p400 
LOC100290283          0.009   PREDICTED: hypothetical protein XP_002347961 
ARPP-21               0.009   cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...
PRR12                 0.009   proline rich 12 
LOC100128511          0.008   PREDICTED: hypothetical protein 
LOC100128511          0.008   PREDICTED: hypothetical protein 
LOC100128511          0.008   PREDICTED: hypothetical protein 
TNXB                  0.008   tenascin XB isoform 1 precursor 
CSF2RB                0.008   colony stimulating factor 2 receptor, beta precursor ...
SEC31B                0.008   SEC31 homolog B 
CHRNA4                0.007   cholinergic receptor, nicotinic, alpha 4 subunit prec...
LOC730060             0.007   PREDICTED: hypothetical protein 
LOC730060             0.007   PREDICTED: hypothetical protein 
LOC730060             0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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