Guide to the Human Genome
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Name: SEC31B Sequence: fasta or formatted (1179aa) NCBI GI: 14149696
Description:

SEC31 homolog B

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         88           2
 C cysteine            2.0         24           1
 D aspartate           3.4         40           2
 E glutamate           5.1         60           2
 F phenylalanine       3.1         37           2
 G glycine             6.4         75           3
 H histidine           2.4         28           1
 I isoleucine          3.1         36           2
 K lysine              4.9         58           3
 L leucine            12.6        149           3
 M methionine          2.0         24           1
 N asparagine          2.3         27           2
 P proline             9.8        116           2
 Q glutamine           6.5         77           2
 R arginine            4.5         53           2
 S serine             10.6        125           3
 T threonine           4.3         51           2
 V valine              6.1         72           2
 W tryptophan          1.8         21           1
 Y tyrosine            1.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SEC31 homolog B 
SEC31A                0.440   SEC31 homolog A isoform 1 
SEC31A                0.440   SEC31 homolog A isoform 1 
SEC31A                0.439   SEC31 homolog A isoform 3 
SEC31A                0.433   SEC31 homolog A isoform 2 
SEC31A                0.423   SEC31 homolog A isoform 4 
RAPH1                 0.021   Ras association and pleckstrin homology domains 1 is...
WNK2                  0.019   WNK lysine deficient protein kinase 2 
FMN2                  0.019   formin 2 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
ZNF828                0.017   zinc finger protein 828 
WDR59                 0.017   WD repeat domain 59 
RERE                  0.016   atrophin-1 like protein isoform b 
RERE                  0.016   atrophin-1 like protein isoform a 
RERE                  0.016   atrophin-1 like protein isoform a 
SRCAP                 0.016   Snf2-related CBP activator protein 
SF3A2                 0.016   splicing factor 3a, subunit 2 
MLXIPL                0.015   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.015   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.015   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.015   Williams Beuren syndrome chromosome region 14 isofor...
GNAS                  0.014   GNAS complex locus alex 
PPRC1                 0.014   peroxisome proliferator-activated receptor gamma, co...
TBL1X                 0.014   transducin beta-like 1X isoform b 
TBL1X                 0.014   transducin beta-like 1X isoform b 
TBL1X                 0.014   transducin beta-like 1X isoform a 
TBL1X                 0.014   transducin beta-like 1X isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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