Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293709 Sequence: fasta or formatted (484aa) NCBI GI: 239756667
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         37           2
 C cysteine            2.3         11           2
 D aspartate           4.8         23           2
 E glutamate           4.8         23           2
 F phenylalanine       0.8          4           1
 G glycine             9.3         45           4
 H histidine           5.2         25           2
 I isoleucine          1.4          7           1
 K lysine              2.5         12           1
 L leucine            14.9         72           4
 M methionine          1.0          5           1
 N asparagine          1.2          6           1
 P proline             9.5         46           3
 Q glutamine           6.6         32           1
 R arginine            7.4         36           2
 S serine              6.2         30           2
 T threonine           4.1         20           1
 V valine              8.3         40           2
 W tryptophan          1.4          7           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290329          1.000   PREDICTED: hypothetical protein XP_002347739 
LOC100289615          1.000   PREDICTED: hypothetical protein XP_002344167 
LOC100292927          0.010   PREDICTED: hypothetical protein 
LOC100290264          0.010   PREDICTED: hypothetical protein XP_002346783 
LOC100289003          0.010   PREDICTED: hypothetical protein XP_002342618 
HR                    0.008   hairless protein isoform a 
HR                    0.008   hairless protein isoform b 
FIBCD1                0.008   fibrinogen C domain containing 1 
FIBCD1                0.008   fibrinogen C domain containing 1 
ALOX15B               0.008   arachidonate 15-lipoxygenase, second type isoform b ...
ALOX15B               0.008   arachidonate 15-lipoxygenase, second type isoform a ...
ALOX15B               0.008   arachidonate 15-lipoxygenase, second type isoform d ...
MLL4                  0.007   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC646960             0.007   PREDICTED: similar to hCG1818432 
LOC646960             0.007   PREDICTED: similar to hCG1818432 
LOC646960             0.007   PREDICTED: hypothetical protein LOC646960 
PRRT1                 0.007   NG5 protein 
IRF2BP1               0.007   interferon regulatory factor 2 binding protein 1 [Ho...
LZTS2                 0.007   leucine zipper, putative tumor suppressor 2 
GGA3                  0.007   ADP-ribosylation factor binding protein 3 isoform sh...
GGA3                  0.007   ADP-ribosylation factor binding protein 3 isoform lo...
TFAP4                 0.006   transcription factor AP-4 (activating enhancer bindin...
LOC100293818          0.006   PREDICTED: hypothetical protein 
COL12A1               0.005   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.005   collagen, type XII, alpha 1 long isoform precursor [...
ZDHHC8                0.005   zinc finger, DHHC domain containing 8 
OSGEP                 0.005   O-sialoglycoprotein endopeptidase 
AGRN                  0.005   agrin 
COL5A1                0.005   alpha 1 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press