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Search of human proteins with 239748180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748180 PREDICTED: hypothetical protein [Homo sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753606 PREDICTED: hypothetical protein [Homo sapiens] 370 e-103
gi|239748180 PREDICTED: hypothetical protein [Homo sapiens] 370 e-103
gi|239742074 PREDICTED: hypothetical protein XP_002342429 [Homo ... 370 e-103
gi|48762934 alpha 2 type I collagen [Homo sapiens] 41 5e-04
gi|194239681 tubulin tyrosine ligase-like family, member 10 isof... 40 0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.001
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 40 0.001
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 39 0.002
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 39 0.003
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 39 0.003
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 39 0.003
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ... 38 0.005
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 38 0.005
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 38 0.005
gi|133908631 SWI/SNF-related matrix-associated actin-dependent r... 37 0.007
gi|133908629 SWI/SNF-related matrix-associated actin-dependent r... 37 0.007
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 37 0.007
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 37 0.009
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 37 0.009
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens] 37 0.009
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 37 0.009
gi|118498339 EMI domain containing 2 [Homo sapiens] 37 0.009
gi|148536862 SWI/SNF-related matrix-associated actin-dependent r... 37 0.012
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 36 0.015
gi|19924103 synapsin II isoform IIa [Homo sapiens] 36 0.015
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 36 0.015
gi|153792780 additional sex combs like 2 [Homo sapiens] 36 0.015
gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] 36 0.020
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 36 0.020
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 36 0.020
>gi|239753606 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 370 bits (949), Expect = e-103
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG 60
MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG
Sbjct: 1 MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG 60
Query: 61 GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG 120
GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG
Sbjct: 61 GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG 120
Query: 121 DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD 177
DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD
Sbjct: 121 DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD 177
>gi|239748180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 370 bits (949), Expect = e-103
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG 60
MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG
Sbjct: 1 MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG 60
Query: 61 GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG 120
GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG
Sbjct: 61 GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG 120
Query: 121 DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD 177
DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD
Sbjct: 121 DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD 177
>gi|239742074 PREDICTED: hypothetical protein XP_002342429 [Homo
sapiens]
Length = 177
Score = 370 bits (949), Expect = e-103
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG 60
MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG
Sbjct: 1 MVGYKLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWG 60
Query: 61 GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG 120
GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG
Sbjct: 61 GAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPG 120
Query: 121 DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD 177
DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD
Sbjct: 121 DADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATGKNRTEKDRQLLKLLD 177
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 41.2 bits (95), Expect = 5e-04
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 44 QPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGG 103
Q PPGP G G+ G A GP PG PG R P G R P G
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGP-PGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASG 427
Query: 104 PSSNRREHGTATRP 117
P+ R +G A RP
Sbjct: 428 PAGVRGPNGDAGRP 441
Score = 34.7 bits (78), Expect = 0.044
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 21/92 (22%)
Query: 37 VQAGRLQQPPPGPHGGAGEGQGWGGAAVLG-------------PGPGSPGTRPGPALEGS 83
VQ G+ +Q PPGP G G G A +G PGP P GP E
Sbjct: 539 VQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESG 598
Query: 84 A---LGQIRRSEPAQPDHAREGGPSSNRREHG 112
A G I P+ P GP N+ E G
Sbjct: 599 AAGPTGPIGSRGPSGPP-----GPDGNKGEPG 625
Score = 33.5 bits (75), Expect = 0.099
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPG--PGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGG 103
PPG G G G A + G PG PG R P G+A R +P A G
Sbjct: 296 PPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKG 355
Query: 104 PSSNRREHGTA 114
S N+ E G+A
Sbjct: 356 ESGNKGEPGSA 366
Score = 33.5 bits (75), Expect = 0.099
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGP-GP-GSPGTRPGPALEGSALGQIRRSEPAQPDHAREGG 103
PPGP G GE G GP GP G PG R + G G+ + EP G
Sbjct: 614 PPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPG---GKGEKGEPGLRGEIGNPG 670
Query: 104 PSSNRREHGTATRPLPGDA 122
R G P P A
Sbjct: 671 RDGARGAPGAVGAPGPAGA 689
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 46 PPGPHGGAGE--GQGWGGAAVLGPGP-GSPGTRPGPALEGSALGQIRRSEPAQPDHAREG 102
PPGP G G Q G LGPGP G G R P G+ Q + +P +
Sbjct: 67 PPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQT 126
Query: 103 GPSSNRREHG 112
GP+ R G
Sbjct: 127 GPAGARGPAG 136
Score = 30.8 bits (68), Expect = 0.64
Identities = 34/93 (36%), Positives = 37/93 (39%), Gaps = 25/93 (26%)
Query: 46 PPGPHGGAGEG-----QGWGGAA--VLGPGP----GSPGTRPGPALEGSALGQIRRSEP- 93
PPGP G G+G G+ GAA PGP G PG PGPA + G P
Sbjct: 770 PPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGP-PGPAGKEGLRGPRGDQGPV 828
Query: 94 ---------AQPDHAREGGPSSNRREHGTATRP 117
P A E GPS E GTA P
Sbjct: 829 GRTGEVGAVGPPGFAGEKGPSG---EAGTAGPP 858
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 47 PGPHGGAGEGQGWGGAAVLGP-GP-GSPGTR--PGPALEGSALGQIRRSEPAQPDHAREG 102
PGP G G+ G A GP GP GSPG R GPA G QP E
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGP--AGAAGQPGAKGER 741
Query: 103 GPSSNRREHG 112
G + E+G
Sbjct: 742 GAKGPKGENG 751
Score = 28.1 bits (61), Expect = 4.2
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 47 PGPHGGAGEGQGWGGAAVLGP-GPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPS 105
PGPHG G G GP GP P GP G + Q R + +P G
Sbjct: 963 PGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGP--RGPSGPQGIRGDKGEPGEKGPRGLP 1020
Query: 106 SNRREHGTATRPLPGDA 122
+ +G + LPG A
Sbjct: 1021 GLKGHNG--LQGLPGIA 1035
>gi|194239681 tubulin tyrosine ligase-like family, member 10 isoform
1 [Homo sapiens]
Length = 673
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/130 (33%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 41 RLQQPPPGPHGGAGEGQGWGGAAVLGPGP-GSPGTRP-GPALE---GSALGQIRRSEPAQ 95
R+QQ P G A PGP +PG P GPA E GS+ + R +P+Q
Sbjct: 29 RIQQRPRARVSGTIPASRLHPAPASQPGPCPAPGHCPVGPAHERPMGSSQEEGLRCQPSQ 88
Query: 96 PDHAREG--GPSSNRREHGTATRPLPG------DADSASFHWAVNRKSLISSIF--GGMA 145
PDH +G GP E +AT PG ADS + A +L+ + GG
Sbjct: 89 PDHDADGHCGPDLEGAERASATPGPPGLLNSHRPADSDDTNAAGPSAALLEGLLLGGGKP 148
Query: 146 TRHAGSRRGP 155
+ H+ +R GP
Sbjct: 149 SPHS-TRPGP 157
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 46 PPGPHGGAGEGQGWGGAAVLG----PG-PGSPGTRPGPALEGSALGQIRRSEPAQPDHAR 100
P GP G GE G A + G PG PG+PG+ PGPA + A+G + P P
Sbjct: 1087 PQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGS-PGPAGQQGAIGSPGPAGPRGPV--- 1142
Query: 101 EGGPSSNRREHGTATRPLP 119
GPS + GT+ P P
Sbjct: 1143 --GPSGPPGKDGTSGHPGP 1159
Score = 36.2 bits (82), Expect = 0.015
Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 44 QPPPGPHG--GAGEGQGWGGAAVLGPGPGSPGTR--PGPALEGSALG-QIRRSEPAQPDH 98
Q PPGP G G+ G+G G A + PG G R PGPA A G + EP +
Sbjct: 380 QGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGA 439
Query: 99 AREGGPSSNRREHG 112
E GP R E G
Sbjct: 440 KGEPGPRGERGEAG 453
Score = 35.0 bits (79), Expect = 0.034
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREG 102
Q PPGP G AG G +GP GSPG+ P +R EP HA
Sbjct: 331 QPGPPGPPGTAGFPGSPGAKGEVGPA-GSPGSNGAPG---------QRGEPGPQGHAGAQ 380
Query: 103 GP 104
GP
Sbjct: 381 GP 382
Score = 33.9 bits (76), Expect = 0.076
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 47 PGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPA-QPDHAREGGPS 105
PG GGAG GG GP PG PG P L+G + P + D GGP
Sbjct: 692 PGLRGGAGPPGPEGGKGAAGP-PGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPG 750
Query: 106 SN 107
++
Sbjct: 751 AD 752
Score = 32.7 bits (73), Expect = 0.17
Identities = 30/96 (31%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 47 PGPHGGAGEGQGWGGAAVLGP----------GPGSPGTRPGPALEGSALG---------- 86
PGP G GE G G V G GP P +PG EG A G
Sbjct: 737 PGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS 796
Query: 87 QIRRSEPAQPDHAR-EGGPSSNRREHGTATRPLPGD 121
R E P A G P N G R PG+
Sbjct: 797 PGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGE 832
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/79 (32%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPS 105
PPGP G +G G GP PG PG + GP+ P P GP+
Sbjct: 181 PPGPPGTSGHPGSPGSPGYQGP-PGEPG-QAGPS-----------GPPGPPGAIGPSGPA 227
Query: 106 SNRREHGTATRP----LPG 120
E G RP LPG
Sbjct: 228 GKDGESGRPGRPGERGLPG 246
Score = 32.3 bits (72), Expect = 0.22
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 46 PPGPHGGAGEGQGWGGAAVLG-PGPGSPGTRPGPALEG 82
PPGP G GE G G PGP P PGP G
Sbjct: 1162 PPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGG 1199
Score = 31.6 bits (70), Expect = 0.38
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 46 PPGPHGGAGEGQGWGGAAVLG-PG----PGSPGT--RPGPALEGSALGQIRRSEPA---- 94
PPGP G GE GG G PG PG PG+ PGP + G+ PA
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 95 QPDHAREGGPSSNRREHGTATRP 117
P GP + + G P
Sbjct: 913 APGSPGVSGPKGDAGQPGEKGSP 935
Score = 30.8 bits (68), Expect = 0.64
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPG--PGSPGTRPGPALEG 82
PPGP G AG+ G + GP PG G+R P +G
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQG 1089
Score = 30.4 bits (67), Expect = 0.84
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSE------PAQP 96
++ PPGP G G G A G+PG+ P +GS G+ R E P P
Sbjct: 991 ERGPPGPQGLPG----LAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAP 1046
Query: 97 DHAREGGP------SSNRREHGTA-TRPLPGDADS 124
H GP S +R E G A PG A S
Sbjct: 1047 GHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGS 1081
Score = 29.6 bits (65), Expect = 1.4
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 38 QAGRLQQPPPGPHGGAGEG--QGW----GGAAVLGP-----GPGSPGTRPGPALEG--SA 84
+ G+ PPGP G AG QG GG GP PG PG P +G
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGP 763
Query: 85 LGQIRRSEPA-QPDHAREGG 103
G I PA QP EGG
Sbjct: 764 TGPIGPPGPAGQPGDKGEGG 783
Score = 28.9 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 44 QPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEG 82
Q PPG G G G + GP PG PG R P +G
Sbjct: 938 QGPPGAPGPLGIAGITGARGLAGP-PGMPGPRGSPGPQG 975
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 47 PGPHGGAGEGQGWGGAAVLG-PGP-GSPGTRPGPALEGSA 84
PGP G AG GG G PG G PG P L G A
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGA 698
Score = 26.9 bits (58), Expect = 9.3
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 47 PGPHGGAGEGQGWGGAAVLGPGPGSPG--TRPGPALEGSALGQIRRSEPAQPDHAREGGP 104
PG G G G+G G PG+PG PGP G S PA P A GP
Sbjct: 1022 PGRDGSPG-GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGP--AGAPGP 1078
Query: 105 SSNRREHG 112
+ +R G
Sbjct: 1079 AGSRGAPG 1086
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/61 (40%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 44 QPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGG 103
QPPPGP +G G P P PG PGPAL L +R E PD A G
Sbjct: 60 QPPPGPASASGPG---AAGPASSPPPAGPG--PGPALPAVRLSLVRLGE---PDSAGAGE 111
Query: 104 P 104
P
Sbjct: 112 P 112
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 39.3 bits (90), Expect = 0.002
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 45 PPPGPHGGAGEGQGWGGAAVLGPGPGSP--GTRPGPALEGSALGQIRRSEPAQPDHAREG 102
PPPGP AG G G GGA GP PG P G R G G G P+QP G
Sbjct: 9 PPPGPPPPAGGGGGAGGAGG-GPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGG--G 65
Query: 103 GP 104
GP
Sbjct: 66 GP 67
Score = 30.8 bits (68), Expect = 0.64
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 45 PPPGPHG----------GAGEGQGWGGAAVLGPGPGSPGTR 75
PPPGP G G G G G G PG G PG R
Sbjct: 30 PPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGPGIR 70
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 60 GGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGP 104
G +GPGPG PG P + G + P P HA GGP
Sbjct: 497 GPLCPVGPGPGGPG--PAGPMGPFNPGPFNQGPPGAPPHA--GGP 537
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 38.5 bits (88), Expect = 0.003
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 37 VQAGRLQQPPPGPHGGAGEGQGWGGAAVLG-PGPGSPGTRPGPALEGSALGQIRRSEPAQ 95
++ G Q PPGP G GE G A +G PG P PGPA E A G+ PA
Sbjct: 1055 LKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1114
Query: 96 PDHAR-------EGGPSSNRREHG 112
D + GP+ + E G
Sbjct: 1115 RDGVQGPVGLPGPAGPAGSPGEDG 1138
Score = 33.5 bits (75), Expect = 0.099
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 30 QHWERRFVQAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEG 82
Q E V+ G L + PPGP G AG G GP PG PG R P G
Sbjct: 439 QKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGP-PGDPGDRGPPGRPG 490
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPG--PGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGG 103
PPGP G G G +G PG PG L G+A + + +P + + G
Sbjct: 974 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDG 1033
Query: 104 PSSNRREHGTATRPLPG 120
P+ R G R LPG
Sbjct: 1034 PAGLRGFPG--ERGLPG 1048
Score = 27.3 bits (59), Expect = 7.1
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREG 102
Q PPGP G AG PG PG R P G+A + R+ E A
Sbjct: 1355 QPGPPGPSGEAGP-------------PGPPGKRGPP---GAAGAEGRQGEKGAKGEAGAE 1398
Query: 103 GP 104
GP
Sbjct: 1399 GP 1400
Score = 26.9 bits (58), Expect = 9.3
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDH-AREG-- 102
PPGP G QG GA + G G PG R + G + R P P +G
Sbjct: 1160 PPGPPGL----QGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1215
Query: 103 GPSSNRREHG 112
GP + E+G
Sbjct: 1216 GPPGEKGENG 1225
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 38.5 bits (88), Expect = 0.003
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 37 VQAGRLQQPPPGPHGGAGEGQGWGGAAVLG-PGPGSPGTRPGPALEGSALGQIRRSEPAQ 95
++ G Q PPGP G GE G A +G PG P PGPA E A G+ PA
Sbjct: 1004 LKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1063
Query: 96 PDHAR-------EGGPSSNRREHG 112
D + GP+ + E G
Sbjct: 1064 RDGVQGPVGLPGPAGPAGSPGEDG 1087
Score = 33.5 bits (75), Expect = 0.099
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 30 QHWERRFVQAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEG 82
Q E V+ G L + PPGP G AG G GP PG PG R P G
Sbjct: 388 QKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGP-PGDPGDRGPPGRPG 439
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPG--PGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGG 103
PPGP G G G +G PG PG L G+A + + +P + + G
Sbjct: 923 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDG 982
Query: 104 PSSNRREHGTATRPLPG 120
P+ R G R LPG
Sbjct: 983 PAGLRGFPG--ERGLPG 997
Score = 27.3 bits (59), Expect = 7.1
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREG 102
Q PPGP G AG PG PG R P G+A + R+ E A
Sbjct: 1304 QPGPPGPSGEAGP-------------PGPPGKRGPP---GAAGAEGRQGEKGAKGEAGAE 1347
Query: 103 GP 104
GP
Sbjct: 1348 GP 1349
Score = 26.9 bits (58), Expect = 9.3
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDH-AREG-- 102
PPGP G QG GA + G G PG R + G + R P P +G
Sbjct: 1109 PPGPPGL----QGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1164
Query: 103 GPSSNRREHG 112
GP + E+G
Sbjct: 1165 GPPGEKGENG 1174
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 38.5 bits (88), Expect = 0.003
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 37 VQAGRLQQPPPGPHGGAGEGQGWGGAAVLG-PGPGSPGTRPGPALEGSALGQIRRSEPAQ 95
++ G Q PPGP G GE G A +G PG P PGPA E A G+ PA
Sbjct: 1043 LKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1102
Query: 96 PDHAR-------EGGPSSNRREHG 112
D + GP+ + E G
Sbjct: 1103 RDGVQGPVGLPGPAGPAGSPGEDG 1126
Score = 33.5 bits (75), Expect = 0.099
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 30 QHWERRFVQAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEG 82
Q E V+ G L + PPGP G AG G GP PG PG R P G
Sbjct: 427 QKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGP-PGDPGDRGPPGRPG 478
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPG--PGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGG 103
PPGP G G G +G PG PG L G+A + + +P + + G
Sbjct: 962 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDG 1021
Query: 104 PSSNRREHGTATRPLPG 120
P+ R G R LPG
Sbjct: 1022 PAGLRGFPG--ERGLPG 1036
Score = 27.3 bits (59), Expect = 7.1
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREG 102
Q PPGP G AG PG PG R P G+A + R+ E A
Sbjct: 1343 QPGPPGPSGEAGP-------------PGPPGKRGPP---GAAGAEGRQGEKGAKGEAGAE 1386
Query: 103 GP 104
GP
Sbjct: 1387 GP 1388
Score = 26.9 bits (58), Expect = 9.3
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDH-AREG-- 102
PPGP G QG GA + G G PG R + G + R P P +G
Sbjct: 1148 PPGPPGL----QGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLP 1203
Query: 103 GPSSNRREHG 112
GP + E+G
Sbjct: 1204 GPPGEKGENG 1213
>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
sapiens]
Length = 211
Score = 37.7 bits (86), Expect = 0.005
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 39 AGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDH 98
AGR ++ PG GGAG G G ++ G G G+ G G+ +R P P
Sbjct: 4 AGRTKEGEPGTPGGAGSG----GRSLRGGGGGAGG---------GGGGREKRGRPESPRR 50
Query: 99 AREGGPSS--NRREHGTATRP 117
R G +S RR G TRP
Sbjct: 51 RRSGERASPARRRGPGATTRP 71
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGP--GPGSPGTRPGPALEGSALGQIRRSEPAQP-DHAREG 102
PPGP G G+ G +GP PG PG+ P + G + +P +P DH R
Sbjct: 1667 PPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPS------GKPGKPGDHGRP- 1719
Query: 103 GPSSNRREHGTATRPLPGDADSASFHWAVNRKSLISSIFGGM 144
GPS + E G GD S + AV R+ I G M
Sbjct: 1720 GPSGLKGEKGDR-----GDIASQNMMRAVARQVCEQLISGQM 1756
Score = 30.8 bits (68), Expect = 0.64
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 38 QAGRLQQPPPGPHGGAGEGQGWGGAAVLGPG--PGSPGTRPGPALEG 82
Q+ R Q PPGP G G G GPG PG PGT P ++G
Sbjct: 1771 QSSRNQPGPPGPPGPPGSA---GARGEPGPGGRPGFPGT---PGMQG 1811
Score = 28.5 bits (62), Expect = 3.2
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 46 PPGPHGGAG----EGQGWGGAAVLGPGP----GSPGTRPGPALEGSALGQIRRSEPAQPD 97
PPGP GG G G+ A+ PGP G PG + P +G I + Q
Sbjct: 1587 PPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGM 1646
Query: 98 HAREGGPSSNRREHGTATRPLPG 120
G P R T T LPG
Sbjct: 1647 KGDAGEPGLPGR---TGTPGLPG 1666
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGP--GPGSPGTRPGPALEGSALGQIRRSEPAQP-DHAREG 102
PPGP G G+ G +GP PG PG+ P + G + +P +P DH R
Sbjct: 2831 PPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPS------GKPGKPGDHGRP- 2883
Query: 103 GPSSNRREHGTATRPLPGDADSASFHWAVNRKSLISSIFGGM 144
GPS + E G GD S + AV R+ I G M
Sbjct: 2884 GPSGLKGEKGDR-----GDIASQNMMRAVARQVCEQLISGQM 2920
Score = 30.8 bits (68), Expect = 0.64
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 38 QAGRLQQPPPGPHGGAGEGQGWGGAAVLGPG--PGSPGTRPGPALEG 82
Q+ R Q PPGP G G G GPG PG PGT P ++G
Sbjct: 2935 QSSRNQPGPPGPPGPPGSA---GARGEPGPGGRPGFPGT---PGMQG 2975
Score = 28.5 bits (62), Expect = 3.2
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 46 PPGPHGGAG----EGQGWGGAAVLGPGP----GSPGTRPGPALEGSALGQIRRSEPAQPD 97
PPGP GG G G+ A+ PGP G PG + P +G I + Q
Sbjct: 2751 PPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGM 2810
Query: 98 HAREGGPSSNRREHGTATRPLPG 120
G P R T T LPG
Sbjct: 2811 KGDAGEPGLPGR---TGTPGLPG 2830
>gi|133908631 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform b [Homo sapiens]
Length = 474
Score = 37.4 bits (85), Expect = 0.007
Identities = 31/83 (37%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 49 PHGGAGEGQGWGGAAVLGPG--PGSP---GTRPGPALEGSALGQIRRSEPAQPDHAR--E 101
P GGAG G G AA LGPG PG P G PG L S + P +R
Sbjct: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
Query: 102 GGPSSNRREHGTATRPLPGDADS 124
GPS +G PG A S
Sbjct: 72 QGPSMGPPGYGGNPSVRPGLAQS 94
>gi|133908629 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform a [Homo sapiens]
Length = 515
Score = 37.4 bits (85), Expect = 0.007
Identities = 31/83 (37%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 49 PHGGAGEGQGWGGAAVLGPG--PGSP---GTRPGPALEGSALGQIRRSEPAQPDHAR--E 101
P GGAG G G AA LGPG PG P G PG L S + P +R
Sbjct: 12 PSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTP 71
Query: 102 GGPSSNRREHGTATRPLPGDADS 124
GPS +G PG A S
Sbjct: 72 QGPSMGPPGYGGNPSVRPGLAQS 94
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 37.4 bits (85), Expect = 0.007
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 66 GPGPGSPGTRPG----PALEGSALGQIRRSEPAQPDHAREGGPSSNRREHGTATRPLPGD 121
GPGP PG P + G+ALG + P PD A E P RR A P
Sbjct: 410 GPGPPDPGEAPKLCKLDSPSGAALG-LSSPSPDSPDAAPEARPRPRRRPRPPAGSPARSP 468
Query: 122 ADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATG 162
A S ++ + G++ A GPGQ A G
Sbjct: 469 AHSLGLNFGDAARQTPRH---GLSALSAPGLPGPGQPAGPG 506
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/73 (35%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 41 RLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEG-SALGQIRRSEPAQPDHA 99
RL PPP P GG G G GP G PG PGP G G P P
Sbjct: 665 RLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRG 724
Query: 100 REGGPSSNRREHG 112
GG S +G
Sbjct: 725 ARGGRSGGGPPNG 737
Score = 32.3 bits (72), Expect = 0.22
Identities = 25/70 (35%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 49 PHGGAGEGQGWGGAAVLGPGP-----GSPGTRP--GPALEGSALGQIRRSEPAQPDHARE 101
PH G G G G GG GP GS G RP GP G G P H
Sbjct: 815 PHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEGPG-HGGPHGHRPHDVPGHRGHDHR 873
Query: 102 GGPSSNRREH 111
G P R H
Sbjct: 874 GPPPHEHRGH 883
Score = 31.2 bits (69), Expect = 0.49
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 38 QAGRLQQPPPGPHGGAGEGQGWGGA--AVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQ 95
+ G PPP P GA G+ GG GPG G G EG G + S +
Sbjct: 710 RGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG-GGMGNSSGHR 768
Query: 96 PDHAREGGPSSNRREH 111
P GG S R H
Sbjct: 769 PHEGPGGGMGSGHRPH 784
Score = 29.3 bits (64), Expect = 1.9
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 35 RFVQAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPG-----SPGTRPGPALEGSALGQIR 89
R + GR PP GG G G GG GPG S G RP EG G
Sbjct: 723 RGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPH---EGPGGGMGS 779
Query: 90 RSEPAQPDHAREGGPSSNRREHG 112
P + GG +R G
Sbjct: 780 GHRPHEGPGGSMGGGGGHRPHEG 802
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 37.0 bits (84), Expect = 0.009
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 39 AGRLQQPPPGPHGGAGEGQGWGGAAVLG-PGPGSPGTRPGPALEG----SALGQIRRSEP 93
A R +Q PGP G AG G + G PG GSPG + P L G SA+G + P
Sbjct: 54 AVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVG--KPGVP 111
Query: 94 AQPDHAREGGPSSNRREHGTATRPLP 119
P E GP + + G A P P
Sbjct: 112 GLPGKPGERGPYGPKGDVGPAGLPGP 137
Score = 34.7 bits (78), Expect = 0.044
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 46 PPGPHGGAGE----GQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHARE 101
PPGP G GE G G GAA PG PGT+ P G A P P +
Sbjct: 248 PPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIA------GPPGPPGFGKP 301
Query: 102 GGPSSNRREHGTATRP 117
G P + E G A P
Sbjct: 302 GLPGL-KGERGPAGLP 316
>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
Length = 1194
Score = 37.0 bits (84), Expect = 0.009
Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 15/134 (11%)
Query: 41 RLQQPPPGPHGG--AGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDH 98
RL P P G A A G GP PG P P + L ++ ++ Q
Sbjct: 678 RLAPPSPAREGTDKANHVPKEEAGAPRGEGPAIPGDTPPPTPRSARLERMTQALALQAGS 737
Query: 99 AREGGPSSNRREHGTATRPLPGDADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQR 158
+GGP P + S H A +KS+ SSI G + + R GP R
Sbjct: 738 LEDGGP------------PRGSEGTPDSLHKAPKKKSIKSSI-GRLFGKKEKGRMGPPGR 784
Query: 159 AATGKNRTEKDRQL 172
++ T D L
Sbjct: 785 DSSSLAGTPSDETL 798
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 37.0 bits (84), Expect = 0.009
Identities = 23/61 (37%), Positives = 25/61 (40%)
Query: 41 RLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAR 100
RL QPPP P A G G A P G PG A G+ G R P P+H
Sbjct: 249 RLVQPPPPPPPPAEAASGPTGTAQGAPSGGGGCKSPGGAGAGATGGSTARKFPTCPEHEM 308
Query: 101 E 101
E
Sbjct: 309 E 309
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 37.0 bits (84), Expect = 0.009
Identities = 33/120 (27%), Positives = 42/120 (35%), Gaps = 8/120 (6%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREG 102
Q PPGP G G G GP G PG P G R P P A
Sbjct: 204 QTGPPGPAGPPGSKGDRGQTGEKGPA-GPPGLLGPPGPRGLPGEMGRPGPPGPPGPAGNP 262
Query: 103 GPSSNRREHGTATRPLPGDADSASFHWAVNRKSLISSIFGGMATRHAGSRRGPGQRAATG 162
GPS N + + P D D+ A +++ ++ G+ G R PG G
Sbjct: 263 GPSPNSPQGALYSLQPPTDKDNGDSRLA---SAIVDTVLAGV----PGPRGPPGPPGPPG 315
>gi|148536862 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 2 [Homo sapiens]
Length = 510
Score = 36.6 bits (83), Expect = 0.012
Identities = 24/54 (44%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 39 AGRLQQPPPGPHGGAGEGQGWGGAAVLG--PGPGSPGTRPGPALEGSALGQIRR 90
AG PP P GGA AA LG P P PG PGPAL G Q +R
Sbjct: 6 AGGFPLPPLSPGGGAV-------AAALGAPPPPAGPGMLPGPALRGPGPAQYQR 52
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 36.2 bits (82), Expect = 0.015
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 41 RLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPA----LEGSALGQIRRSEPAQP 96
+L + P P G E G G PG+PG PGPA +G+ RR E A P
Sbjct: 63 QLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAP 122
Query: 97 DHAREGGPSSNRREHGTATRPLPGDA--DSASFHWAVNRKSLI 137
G S + + + L GDA + A HW S+I
Sbjct: 123 ---LAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVI 162
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 36.2 bits (82), Expect = 0.015
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 5 KLRQMQAQSPIKAPKHIKPKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWGGAAV 64
K+ Q+ +++P +P+ +P T+ Q + + + P P GG G+ QG +
Sbjct: 413 KMNQLLSRTPALSPQ--RPLTTQQPQSGTLKDPDSSKTPPQRPPPQGGPGQPQG-----M 465
Query: 65 LGPGPGSPGTR--PGPALEGSALGQIRRSEPAQPDHAREGGPS------SNRREHGTATR 116
PG P R PGP+L S+ S A R GGP+ S+ A
Sbjct: 466 QPPGKVLPPRRLPPGPSLPPSSSSSSSSSSSAP---QRPGGPTTHGDAPSSSSSLAEAQP 522
Query: 117 PLPGDADSASFHWAVNRKSLISSIF 141
PL H +N+ +++ F
Sbjct: 523 PLAAPPQKPQPHPQLNKSQSLTNAF 547
Score = 27.7 bits (60), Expect = 5.4
Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGP---GSPGTRPGP 78
QQPPP P G G PGP P + P P
Sbjct: 32 QQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAP 70
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 36.2 bits (82), Expect = 0.015
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 38 QAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQP 96
Q G Q PP P G GG GP P PG GP +G + Q RS P +P
Sbjct: 225 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP--PGKPQGPPAQGGSKSQSARSPPGKP 281
Score = 29.6 bits (65), Expect = 1.4
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 38 QAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPD 97
Q G Q PP P G GG GP P PG GP +G + RS P +P
Sbjct: 42 QGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPP--PGKPQGPPPQGDK-SRSPRSPPGKPQ 98
Query: 98 HAREGGPSSNRREHGTATRPLPG 120
GP P PG
Sbjct: 99 -----GPPPQGGNQPQGPPPPPG 116
Score = 29.6 bits (65), Expect = 1.4
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 38 QAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPD 97
Q G Q PP P G GG GP P PG GP +G + RS P +P
Sbjct: 103 QGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPP--PGKPQGPPPQGDK-SRSPRSPPGKPQ 159
Query: 98 HAREGGPSSNRREHGTATRPLPG 120
GP P PG
Sbjct: 160 -----GPPPQGGNQPQGPPPPPG 177
Score = 29.3 bits (64), Expect = 1.9
Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 38 QAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPD 97
Q G Q PP P G GG GP P PG GP +G +S +Q
Sbjct: 164 QGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPP--PGKPQGPPPQGD------KSRSSQSP 215
Query: 98 HAREGGPSSNRREHGTATRPLPG 120
+ GP P PG
Sbjct: 216 PGKPQGPPPQGGNQPQGPPPPPG 238
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 36.2 bits (82), Expect = 0.015
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 45 PPPGPHGGAGEGQGWGGAAVLGPGPGS---PGTRPGPALEGSALG 86
P PGP GG G G+G G G PGS T GP LE + G
Sbjct: 691 PGPGPGGGQGPGEGGEGQTARGGSPGSDRVSETGKGPTLELAGTG 735
>gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]
Length = 694
Score = 35.8 bits (81), Expect = 0.020
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 31 HWERRFVQAGRLQQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALE 81
H E R R +P P H G + WGG A LGPG PG + P E
Sbjct: 149 HLEERLASGFR-SRPEPSYHSRQGSDE-WGGPAELGPGEAGPGWQDKPPRE 197
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/56 (44%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGP--GPGSPGTR--PGPALEGSALGQIRRSEPAQPD 97
PPGP G AG G A GP PG PG + PGPA E A G+ PA D
Sbjct: 1079 PPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD 1134
Score = 33.1 bits (74), Expect = 0.13
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 46 PPGPHGGAGE-GQGWGGAAVLGPGPGSPGTRPGPALEGSALG-QIRRSEPAQPDHAREGG 103
PPGP G GE G+ A PGP P GP +G P +P A + G
Sbjct: 1301 PPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDG 1360
Query: 104 PSSNRREHG 112
P ++ + G
Sbjct: 1361 PPGDKGDDG 1369
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREG 102
Q PPGP G G G GP PG G PG E G+ EP P
Sbjct: 1247 QMGPPGPPGPRGPSGAPGADGPQGP-PGGIGN-PGAVGEKGEPGEA--GEPGLPGEGGPP 1302
Query: 103 GPSSNRREHG 112
GP R E G
Sbjct: 1303 GPKGERGEKG 1312
Score = 31.2 bits (69), Expect = 0.49
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 23 PKLTKGSQHWERRFVQAGRLQQPPPGPHGGAGEGQGWGGAAVLGP--GPGSPGTRPGPAL 80
P+ KG Q E ++ G L + PPGP G AG G +GP G PG R P
Sbjct: 448 PRGEKG-QKGEPAIIEPGMLIEGPPGPEGPAGLP---GPPGTMGPTGQVGDPGERGPPGR 503
Query: 81 EG 82
G
Sbjct: 504 PG 505
Score = 28.1 bits (61), Expect = 4.2
Identities = 29/97 (29%), Positives = 34/97 (35%), Gaps = 27/97 (27%)
Query: 40 GRLQQPPP----GPHGGAGEGQGWGGAAVLGPG-----------PGSPGTR--------P 76
G + P P GP G G G G LGP PG PG + P
Sbjct: 829 GEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFP 888
Query: 77 G-PALEGSALGQIRRSEPAQPDHAREGGPSSNRREHG 112
G P G G R P +P + GP+ R E G
Sbjct: 889 GFPGANGEKGG---RGTPGKPGPRGQRGPTGPRGERG 922
Score = 26.9 bits (58), Expect = 9.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 46 PPGPHGGAGEGQGWGGAAVLGP----GP----GSPGTRPGP 78
P GP G GE G A + GP GP G+PG +PGP
Sbjct: 1397 PAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPG-KPGP 1436
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 46 PPGPHGGAGEGQ-GWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQ--PDHAREG 102
PPGP G G G G A GPGSPG PGP E + + A+ P
Sbjct: 602 PPGPPGYGPAGPIGDKGQAGFPGGPGSPGL-PGPKGEPGKIVPLPGPPGAEGLPGSPGFP 660
Query: 103 GPSSNRREHGTATRP-LPGD 121
GP +R GT RP LPG+
Sbjct: 661 GPQGDRGFPGTPGRPGLPGE 680
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 47 PGPHGGAGEGQGWGGAAVLGPGPGSPGTRPGPALEGSALGQIRRSEPAQPDHAREGGPSS 106
PG G G +G G L PG PG++ G Q + P P HA E GP
Sbjct: 1179 PGAKGDKGS-KGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATE-GPKG 1236
Query: 107 NRREHGTATRP-LPG 120
+R G P LPG
Sbjct: 1237 DRGPQGQPGLPGLPG 1251
Score = 27.3 bits (59), Expect = 7.1
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 43 QQPPPGPHGGAGEGQGWGGAAVLGPGPGSPG--TRPGP 78
Q PPGP G G G LGP PG PG PGP
Sbjct: 113 QDGPPGPPGIPGCNGTKGERGPLGP-PGLPGFAGNPGP 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,945,251
Number of Sequences: 37866
Number of extensions: 694480
Number of successful extensions: 5628
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 569
Number of HSP's that attempted gapping in prelim test: 3781
Number of HSP's gapped (non-prelim): 2028
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.