Guide to the Human Genome
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Name: SAMD4B Sequence: fasta or formatted (694aa) NCBI GI: 55742695
Description:

sterile alpha motif domain containing 4B

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         56           3
 C cysteine            1.2          8           1
 D aspartate           3.0         21           1
 E glutamate           7.1         49           2
 F phenylalanine       2.3         16           1
 G glycine             7.2         50           2
 H histidine           2.7         19           1
 I isoleucine          3.5         24           3
 K lysine              4.2         29           2
 L leucine            11.1         77           3
 M methionine          2.3         16           2
 N asparagine          3.2         22           1
 P proline             9.8         68           4
 Q glutamine           6.2         43           2
 R arginine            5.0         35           2
 S serine             10.4         72           3
 T threonine           5.6         39           3
 V valine              4.2         29           2
 W tryptophan          1.6         11           1
 Y tyrosine            1.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterile alpha motif domain containing 4B 
SAMD4A                0.581   sterile alpha motif domain containing 4 isoform 1 [...
SAMD4A                0.430   sterile alpha motif domain containing 4 isoform 2 [...
SAMD4A                0.210   sterile alpha motif domain containing 4 isoform 3 [...
BAT2                  0.017   HLA-B associated transcript-2 
ZCCHC14               0.017   zinc finger, CCHC domain containing 14 
FMNL1                 0.015   formin-like 1 
PTPN23                0.015   protein tyrosine phosphatase, non-receptor type 23 [...
PRR12                 0.015   proline rich 12 
WAS                   0.014   Wiskott-Aldrich syndrome protein 
EPN1                  0.014   epsin 1 isoform b 
FMNL2                 0.014   formin-like 2 
FSCB                  0.013   fibrous sheath CABYR binding protein 
CRKRS                 0.012   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.012   Cdc2-related kinase, arginine/serine-rich isoform 1...
DIAPH2                0.012   diaphanous 2 isoform 12C 
DIAPH2                0.012   diaphanous 2 isoform 156 
EPN1                  0.012   epsin 1 isoform c 
EPN1                  0.012   epsin 1 isoform a 
CIC                   0.012   capicua homolog 
HOXA3                 0.012   homeobox A3 isoform a 
HOXA3                 0.012   homeobox A3 isoform a 
EPS8                  0.012   epidermal growth factor receptor pathway substrate 8...
DIAPH1                0.011   diaphanous 1 isoform 2 
DIAPH1                0.011   diaphanous 1 isoform 1 
CEL                   0.011   carboxyl ester lipase precursor 
ADD1                  0.011   adducin 1 (alpha) isoform b 
ADD1                  0.011   adducin 1 (alpha) isoform a 
TRRAP                 0.011   transformation/transcription domain-associated protei...
NCOR2                 0.011   nuclear receptor co-repressor 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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