Guide to the Human Genome
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Name: PPFIA3 Sequence: fasta or formatted (1194aa) NCBI GI: 32189362
Description:

PTPRF interacting protein alpha 3

Referenced in:

Protein Tyrosine Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         98           3
 C cysteine            0.8         10           1
 D aspartate           4.4         53           2
 E glutamate          12.1        144           3
 F phenylalanine       1.3         15           1
 G glycine             6.8         81           2
 H histidine           1.8         22           2
 I isoleucine          2.2         26           1
 K lysine              5.4         64           3
 L leucine            13.4        160           3
 M methionine          2.8         33           2
 N asparagine          2.9         35           2
 P proline             5.3         63           3
 Q glutamine           4.9         59           2
 R arginine            8.7        104           3
 S serine              8.9        106           3
 T threonine           4.5         54           2
 V valine              3.3         39           2
 W tryptophan          1.2         14           1
 Y tyrosine            1.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PTPRF interacting protein alpha 3 
PPFIA1                0.584   PTPRF interacting protein alpha 1 isoform b 
PPFIA1                0.574   PTPRF interacting protein alpha 1 isoform a 
PPFIA2                0.570   PTPRF interacting protein alpha 2 
PPFIA4                0.305   protein tyrosine phosphatase, receptor type, f polyp...
KIAA1026              0.069   kazrin isoform E 
PPFIBP2               0.053   PTPRF interacting protein, binding protein 2 (lipri...
PPFIBP1               0.051   PTPRF interacting protein binding protein 1 isoform ...
CROCC                 0.033   ciliary rootlet coiled-coil 
MYH9                  0.032   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.032   myosin, heavy polypeptide 10, non-muscle 
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH8                  0.031   myosin, heavy chain 8, skeletal muscle, perinatal [...
ERC1                  0.031   RAB6-interacting protein 2 isoform epsilon 
MYH1                  0.031   myosin, heavy chain 1, skeletal muscle, adult [Homo...
LOC100133758          0.030   PREDICTED: hypothetical protein, partial 
ERC1                  0.029   RAB6-interacting protein 2 isoform delta 
MYH4                  0.029   myosin, heavy polypeptide 4, skeletal muscle 
MYH14                 0.029   myosin, heavy chain 14 isoform 1 
MYH14                 0.029   myosin, heavy chain 14 isoform 2 
MYH14                 0.029   myosin, heavy chain 14 isoform 3 
MYH7                  0.028   myosin, heavy chain 7, cardiac muscle, beta 
MYH3                  0.028   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CGN                   0.028   cingulin 
MYH7B                 0.028   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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