Guide to the Human Genome
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Name: LOC100292796 Sequence: fasta or formatted (177aa) NCBI GI: 239753606
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         18           2
 C cysteine            0.0          0           0
 D aspartate           2.8          5           1
 E glutamate           4.0          7           1
 F phenylalanine       1.7          3           1
 G glycine            15.8         28           2
 H histidine           4.0          7           1
 I isoleucine          2.8          5           1
 K lysine              5.6         10           1
 L leucine             6.8         12           2
 M methionine          1.7          3           1
 N asparagine          1.7          3           1
 P proline            10.2         18           3
 Q glutamine           6.8         12           2
 R arginine           10.2         18           2
 S serine              7.3         13           2
 T threonine           4.0          7           1
 V valine              2.3          4           1
 W tryptophan          1.7          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287763          1.000   PREDICTED: hypothetical protein 
LOC100287763          1.000   PREDICTED: hypothetical protein XP_002342429 
COL1A2                0.046   alpha 2 type I collagen 
TTLL10                0.043   tubulin tyrosine ligase-like family, member 10 isof...
COL3A1                0.043   collagen type III alpha 1 preproprotein 
DMWD                  0.043   dystrophia myotonica-containing WD repeat motif prot...
KHSRP                 0.041   KH-type splicing regulatory protein 
COL11A1               0.041   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.041   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.041   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100288548          0.038   PREDICTED: hypothetical protein XP_002342129 
COL12A1               0.038   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.038   collagen, type XII, alpha 1 long isoform precursor [...
SMARCD1               0.035   SWI/SNF-related matrix-associated actin-dependent r...
SMARCD1               0.035   SWI/SNF-related matrix-associated actin-dependent r...
DUSP8                 0.035   dual specificity phosphatase 8 
PPP1R10               0.035   protein phosphatase 1, regulatory subunit 10 
COL10A1               0.035   type X collagen alpha 1 precursor 
PPFIA3                0.035   PTPRF interacting protein alpha 3 
TRIM67                0.035   tripartite motif-containing 67 
EMID2                 0.035   EMI domain containing 2 
SMARCD2               0.035   SWI/SNF-related matrix-associated actin-dependent r...
SORCS2                0.032   VPS10 domain receptor protein SORCS 2 
SYN2                  0.032   synapsin II isoform IIa 
PRB1                  0.032   proline-rich protein BstNI subfamily 1 isoform 1 pre...
ASXL2                 0.032   additional sex combs like 2 
SAMD4B                0.032   sterile alpha motif domain containing 4B 
COL5A1                0.032   alpha 1 type V collagen preproprotein 
COL4A1                0.032   alpha 1 type IV collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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