Guide to the Human Genome
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Name: SMARCD1 Sequence: fasta or formatted (515aa) NCBI GI: 133908629
Description:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin d1 isoform a

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [474aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         39           4
 C cysteine            1.0          5           1
 D aspartate           5.6         29           2
 E glutamate           5.6         29           3
 F phenylalanine       3.7         19           2
 G glycine             6.6         34           2
 H histidine           1.7          9           1
 I isoleucine          5.2         27           3
 K lysine              6.2         32           4
 L leucine             8.3         43           2
 M methionine          3.1         16           1
 N asparagine          3.1         16           1
 P proline             7.6         39           2
 Q glutamine           8.9         46           3
 R arginine            7.4         38           2
 S serine              5.2         27           2
 T threonine           4.9         25           2
 V valine              4.7         24           2
 W tryptophan          1.0          5           1
 Y tyrosine            2.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF-related matrix-associated actin-dependent r... 
SMARCD1               0.898   SWI/SNF-related matrix-associated actin-dependent r...
SMARCD3               0.665   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.665   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.663   SWI/SNF related, matrix associated, actin dependent ...
SMARCD2               0.615   SWI/SNF-related matrix-associated actin-dependent r...
SMARCD2               0.611   SWI/SNF-related matrix-associated actin-dependent r...
COL2A1                0.029   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.029   collagen, type II, alpha 1 isoform 2 precursor [Hom...
MED25                 0.028   mediator complex subunit 25 
KAT2B                 0.025   K(lysine) acetyltransferase 2B 
COL3A1                0.025   collagen type III alpha 1 preproprotein 
COL1A2                0.024   alpha 2 type I collagen 
COL11A2               0.024   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.024   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.024   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A1               0.024   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.024   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.024   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL18A1               0.024   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.024   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.024   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
SNRPB                 0.024   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.024   small nuclear ribonucleoprotein polypeptide B/B' isof...
KDM1                  0.024   amine oxidase (flavin containing) domain 2 isoform b...
SCARA3                0.023   scavenger receptor class A, member 3 isoform 1 [Homo...
COL1A1                0.023   alpha 1 type I collagen preproprotein 
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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