Guide to the Human Genome
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Name: LOC100131192 Sequence: fasta or formatted (429aa) NCBI GI: 239747584
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {175aa} PREDICTED: hypothetical protein
alt mRNA {429aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         41           3
 C cysteine            2.8         12           1
 D aspartate           3.5         15           1
 E glutamate           4.0         17           4
 F phenylalanine       1.9          8           1
 G glycine            10.7         46           2
 H histidine           1.6          7           1
 I isoleucine          1.6          7           1
 K lysine              3.0         13           2
 L leucine            12.6         54           2
 M methionine          1.6          7           1
 N asparagine          1.6          7           1
 P proline             8.4         36           3
 Q glutamine           4.7         20           1
 R arginine           10.0         43           3
 S serine              9.8         42           6
 T threonine           4.2         18           1
 V valine              5.6         24           3
 W tryptophan          1.2          5           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131192          1.000   PREDICTED: hypothetical protein 
LOC100131192          0.300   PREDICTED: hypothetical protein 
LOC283999             0.018   hypothetical protein LOC283999 
LOC100133756          0.017   PREDICTED: hypothetical protein, partial 
COL8A1                0.014   alpha 1 type VIII collagen precursor 
COL8A1                0.014   alpha 1 type VIII collagen precursor 
LOC100128074          0.014   PREDICTED: hypothetical protein 
OTUD1                 0.013   OTU domain containing 1 
LOC100128074          0.012   PREDICTED: hypothetical protein 
MAP7D1                0.012   MAP7 domain containing 1 
GLI4                  0.012   GLI-Kruppel family member GLI4 
GRIK5                 0.012   glutamate receptor KA2 precursor 
SYN1                  0.012   synapsin I isoform Ia 
SYN1                  0.012   synapsin I isoform Ib 
LOC646509             0.012   PREDICTED: hypothetical protein 
C1QL1                 0.012   complement component 1, q subcomponent-like 1 
C15orf52              0.012   hypothetical protein LOC388115 
PRR18                 0.011   proline rich region 18 
SHANK1                0.011   SH3 and multiple ankyrin repeat domains 1 
COL2A1                0.011   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.011   collagen, type II, alpha 1 isoform 2 precursor [Hom...
EMILIN1               0.011   elastin microfibril interfacer 1 
UBE2Z                 0.011   ubiquitin-conjugating enzyme E2Z 
GPR124                0.011   G protein-coupled receptor 124 
WBP11                 0.011   WW domain binding protein 11 
TCEB3B                0.010   elongin A2 
LOC100291554          0.010   PREDICTED: hypothetical protein XP_002345934 
LOC729506             0.010   PREDICTED: hypothetical protein 
LOC100290255          0.010   PREDICTED: hypothetical protein XP_002346835 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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