Guide to the Human Genome
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Name: TCEB3B Sequence: fasta or formatted (753aa) NCBI GI: 45439357
Description:

elongin A2

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         72           2
 C cysteine            1.6         12           1
 D aspartate           4.9         37           1
 E glutamate           7.7         58           2
 F phenylalanine       1.6         12           1
 G glycine             6.1         46           3
 H histidine           2.9         22           1
 I isoleucine          1.2          9           1
 K lysine              7.8         59           3
 L leucine             6.8         51           2
 M methionine          1.5         11           1
 N asparagine          2.7         20           2
 P proline             9.0         68           2
 Q glutamine           6.0         45           2
 R arginine            9.7         73           2
 S serine              9.4         71           4
 T threonine           5.0         38           2
 V valine              3.6         27           2
 W tryptophan          1.5         11           1
 Y tyrosine            1.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   elongin A2 
TCEB3                 0.385   elongin A 
TCEB3C                0.306   transcription elongation factor B polypeptide 3C [H...
TCEB3CL               0.304   transcription elongation factor B polypeptide 3C-li...
LOC100293394          0.050   PREDICTED: similar to RNA polymerase II transcripti...
SRRM2                 0.016   splicing coactivator subunit SRm300 
FLJ37078              0.015   hypothetical protein LOC222183 
SRRM1                 0.015   serine/arginine repetitive matrix 1 
LOC100170229          0.014   hypothetical protein LOC100170229 
LOC100289917          0.013   PREDICTED: hypothetical protein XP_002347096 
FLG                   0.013   filaggrin 
REXO1                 0.013   transcription elongation factor B polypeptide 3 bin...
ZNF828                0.013   zinc finger protein 828 
AFF4                  0.013   ALL1 fused gene from 5q31 
MICAL3                0.012   microtubule associated monoxygenase, calponin and L...
LOC100294236          0.012   PREDICTED: similar to diffuse panbronchiolitis crit...
LOC731605             0.011   PREDICTED: similar to BCL2-associated transcription...
ZNF469                0.011   zinc finger protein 469 
BCLAF1                0.011   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.011   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.011   BCL2-associated transcription factor 1 isoform 1 [Hom...
LOC731605             0.011   PREDICTED: similar to BCL2-associated transcription...
RLTPR                 0.011   RGD motif, leucine rich repeats, tropomodulin domain...
DPCR1                 0.011   diffuse panbronchiolitis critical region 1 protein ...
ABL1                  0.011   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.011   c-abl oncogene 1, receptor tyrosine kinase isoform b...
LOC100134017          0.011   PREDICTED: hypothetical protein 
CEP68                 0.011   centrosomal protein 68kDa 
LMTK3                 0.011   lemur tyrosine kinase 3 
INSM1                 0.011   insulinoma-associated 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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